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Fixed Algorithms to support DataMiner 

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManagerAlgorithms@133939 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
Giancarlo Panichi 2016-11-07 17:45:01 +00:00
parent 68b1e72e59
commit d1c4117ef8
96 changed files with 209 additions and 208 deletions
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31
src/main/java/org/gcube/dataaccess/algorithms/drmalgorithms/GetTableDetails.java
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@ -23,6 +23,9 @@ import org.hibernate.HibernateException;
/** Class that allows to retrieve some information about the chosen table */
public class GetTableDetails extends StandardLocalExternalAlgorithm {
private static final String ROWS_NUMBER = "Rows Number";
private static final String NAME_OF_COLUMNS = "Name Of Columns";
private static final String CREATE_TABLE_STATEMENT = "Create Table Statement";
private LinkedHashMap<String, StatisticalType> map = new LinkedHashMap<String, StatisticalType>();
// object that allows to manage some operations on a database
private DatabaseManagement mgt;
@ -410,12 +413,13 @@ public class GetTableDetails extends StandardLocalExternalAlgorithm {
createTable = mgt.getCreateTable(tableName, databaseName);
}
PrimitiveType valCreateTable = new PrimitiveType(
String.class.getName(), createTable, PrimitiveTypes.STRING,
"Create Table Statement", "Create Table Statement");
CREATE_TABLE_STATEMENT, CREATE_TABLE_STATEMENT);
map.put("CreateTable", valCreateTable);
map.put(CREATE_TABLE_STATEMENT, valCreateTable);
AnalysisLogger.getLogger().debug(
"In GetTableDetails->getting the \"CreateTableStatement\": "
@ -443,9 +447,9 @@ public class GetTableDetails extends StandardLocalExternalAlgorithm {
PrimitiveType valListColumnNamesTable = new PrimitiveType(
String.class.getName(), ColumnName, PrimitiveTypes.STRING,
"Column Name", "Column Name");
NAME_OF_COLUMNS, NAME_OF_COLUMNS);
map.put("Column Names", valListColumnNamesTable);
map.put(NAME_OF_COLUMNS, valListColumnNamesTable);
AnalysisLogger.getLogger().debug(
"In GetTableDetails->getting the column names list: "
@ -473,23 +477,14 @@ public class GetTableDetails extends StandardLocalExternalAlgorithm {
}
// long rows = mgt.getNumberOfRows(tableName);
// PrimitiveType valRows = new PrimitiveType(
// String.class.getName(), rows.toString(),
// PrimitiveTypes.STRING, "NumberRows", "Rows' Number");
PrimitiveType valRows = new PrimitiveType(String.class.getName(),
Long.toString(rows), PrimitiveTypes.STRING, "Number Rows",
"Rows' Number");
Long.toString(rows), PrimitiveTypes.STRING, ROWS_NUMBER,
ROWS_NUMBER);
map.put("NumberRows", valRows);
// AnalysisLogger
// .getLogger()
// .debug("In TableDetails->getting the number of rows: " +
// rows.toString());
map.put(ROWS_NUMBER, valRows);
AnalysisLogger.getLogger().debug(
"In GetTableDetails->getting the number of rows: "
+ Long.toString(rows));

6
src/main/java/org/gcube/dataaccess/algorithms/drmalgorithms/RandomSampleOnTable.java
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@ -376,7 +376,7 @@ public class RandomSampleOnTable extends StandardLocalExternalAlgorithm {
// "In RandomSampleOnTable->string encoded: " + encoded);
PrimitiveType val = new PrimitiveType(String.class.getName(), encoded,
PrimitiveTypes.STRING, "Row", "Row");
PrimitiveTypes.STRING, "Row Header", "Row Header");
mapResults.put("HEADERS", val);
for (int i = 0; i < mapResult.size() - 1; i++) {
@ -386,9 +386,9 @@ public class RandomSampleOnTable extends StandardLocalExternalAlgorithm {
// // check the encoded value
// AnalysisLogger.getLogger().debug(
// "In RandomSampleOnTable->string encoded: " + encoded);
String row="Row "+Integer.toString(i+1);
PrimitiveType val1 = new PrimitiveType(String.class.getName(),
encoded, PrimitiveTypes.STRING, "Row", "Row");
encoded, PrimitiveTypes.STRING, row, row);
mapResults.put(String.valueOf(i), val1);
// //check value contained in map
// String value = (String) val1.getContent();

7
src/main/java/org/gcube/dataaccess/algorithms/drmalgorithms/SampleOnTable.java
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@ -369,7 +369,7 @@ public class SampleOnTable extends StandardLocalExternalAlgorithm {
// "In SampleOnTable->string encoded: " + encoded);
PrimitiveType val = new PrimitiveType(String.class.getName(), encoded,
PrimitiveTypes.STRING, "Row", "Row");
PrimitiveTypes.STRING, "Row Header", "Row Header");
mapResults.put("HEADERS", val);
for (int i = 0; i < mapResult.size() - 1; i++) {
@ -379,9 +379,10 @@ public class SampleOnTable extends StandardLocalExternalAlgorithm {
// // check encoded value
// AnalysisLogger.getLogger().debug(
// "In SampleOnTable->string encoded: " + encoded);
String row="Row "+Integer.toString(i+1);
PrimitiveType val1 = new PrimitiveType(String.class.getName(),
encoded, PrimitiveTypes.STRING, "Row", "Row");
encoded, PrimitiveTypes.STRING, row, row);
mapResults.put(String.valueOf(i), val1);
// //check value contained in the map
// String value = (String) val1.getContent();

6
src/main/java/org/gcube/dataaccess/algorithms/drmalgorithms/SmartSampleOnTable.java
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@ -375,7 +375,7 @@ public class SmartSampleOnTable extends StandardLocalExternalAlgorithm {
// "In SmartSampleOnTable->string encoded: " + encoded);
PrimitiveType val = new PrimitiveType(String.class.getName(), encoded,
PrimitiveTypes.STRING, "Row", "Row");
PrimitiveTypes.STRING, "Row Header", "Row Header");
mapResults.put("HEADERS", val);
for (int i = 0; i < mapResult.size() - 1; i++) {
@ -385,9 +385,9 @@ public class SmartSampleOnTable extends StandardLocalExternalAlgorithm {
// // check encoded value
// AnalysisLogger.getLogger().debug(
// "In SmartSampleOnTable->string encoded: " + encoded);
String row="Row "+Integer.toString(i+1);
PrimitiveType val1 = new PrimitiveType(String.class.getName(),
encoded, PrimitiveTypes.STRING, "Row", "Row");
encoded, PrimitiveTypes.STRING, row, row);
mapResults.put(String.valueOf(i), val1);
// //check value
// String value = (String) val1.getContent();

23
src/main/java/org/gcube/dataaccess/algorithms/drmalgorithms/SubmitQuery.java
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@ -37,6 +37,9 @@ import com.adventnet.swissqlapi.sql.parser.ParseException;
*/
public class SubmitQuery extends StandardLocalExternalAlgorithm {
private static final String FILE = "File";
private static final String TOTAL_ROWS = "Total Rows";
static long maximum_execution_time = 30*60*1000; //time to stop execution query
private LinkedHashMap<String, StatisticalType> map = new LinkedHashMap<String, StatisticalType>();
// object that allows to manage some operations on a database
@ -414,6 +417,7 @@ public class SubmitQuery extends StandardLocalExternalAlgorithm {
String DatabaseUserName = iterator.next();
String DatabasePassword = iterator.next();
String DatabaseDriver = iterator.next();
@SuppressWarnings("unused")
String DatabaseDialect = iterator.next();
String DatabaseURL = iterator.next();
String DatabaseName = iterator.next();
@ -583,7 +587,7 @@ public class SubmitQuery extends StandardLocalExternalAlgorithm {
// "In RandomSampleOnTable->string encoded: " + encoded);
PrimitiveType val = new PrimitiveType(String.class.getName(),
encoded, PrimitiveTypes.STRING, "Row", "Row");
encoded, PrimitiveTypes.STRING, "Row Header", "Row Header");
mapResults.put("HEADERS", val);
@ -595,9 +599,9 @@ public class SubmitQuery extends StandardLocalExternalAlgorithm {
// // check the encoded value
// AnalysisLogger.getLogger().debug(
// "In RandomSampleOnTable->string encoded: " + encoded);
String row="Row "+Integer.toString(i+1);
PrimitiveType val1 = new PrimitiveType(String.class.getName(),
encoded, PrimitiveTypes.STRING, "Row", "Row");
encoded, PrimitiveTypes.STRING, row, row);
mapResults.put(String.valueOf(i), val1);
// //check value contained in map
// String value = (String) val1.getContent();
@ -609,15 +613,16 @@ public class SubmitQuery extends StandardLocalExternalAlgorithm {
// to add the file
PrimitiveType fileResult = new
PrimitiveType(File.class.getName(),
mgt.getFile(), PrimitiveTypes.FILE, "File",
"File");
mapResults.put("File", fileResult);
mgt.getFile(), PrimitiveTypes.FILE, FILE,
FILE);
mapResults.put(FILE, fileResult);
// //to add the number of total rows for a result of a submit query operation
PrimitiveType totalRows = new PrimitiveType(String.class.getName(),
String.valueOf(mgt.getSubmitQueryTotalRows()), PrimitiveTypes.STRING, "Total Rows",
"Total Rows");
mapResults.put("Total Rows", totalRows);
String.valueOf(mgt.getSubmitQueryTotalRows()), PrimitiveTypes.STRING, TOTAL_ROWS,TOTAL_ROWS
);
mapResults.put(TOTAL_ROWS, totalRows);
}
return mapResults;

4
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4
target/apidocs/org/gcube/dataaccess/algorithms/drmalgorithms/GetTableDetails.html
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target/apidocs/org/gcube/dataaccess/algorithms/drmalgorithms/ListDBInfo.html
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<title>Class Hierarchy (DatabasesResourcesManagerAlgorithms 1.4.0-SNAPSHOT API)</title>
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<meta name="date" content="2016-11-07">
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target/maven-archiver/pom.properties
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#Generated by Maven
#Fri Nov 04 13:07:07 CET 2016
#Mon Nov 07 18:22:33 CET 2016
version=1.4.0-SNAPSHOT
groupId=org.gcube.dataaccess.algorithms
artifactId=database-rm-algorithms