Fabio Sinibaldi 7 years ago
commit 6db6c31cbe

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<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" output="target/classes" path="src/main/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
<attributes>
<attribute name="maven.pomderived" value="true"/>
<attribute name="org.eclipse.jst.component.dependency" value="/WEB-INF/lib"/>
</attributes>
</classpathentry>
<classpathentry kind="output" path="target/classes"/>
</classpath>

@ -0,0 +1,42 @@
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>data-transfer-service</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.wst.jsdt.core.javascriptValidator</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.wst.common.project.facet.core.builder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.wst.validation.validationbuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.m2e.core.maven2Builder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jem.workbench.JavaEMFNature</nature>
<nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature>
<nature>org.eclipse.jdt.core.javanature</nature>
<nature>org.eclipse.m2e.core.maven2Nature</nature>
<nature>org.eclipse.wst.common.project.facet.core.nature</nature>
<nature>org.eclipse.wst.jsdt.core.jsNature</nature>
</natures>
</projectDescription>

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<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" path="src/main/webapp"/>
<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.JRE_CONTAINER"/>
<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.WebProject">
<attributes>
<attribute name="hide" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.baseBrowserLibrary"/>
<classpathentry kind="output" path=""/>
</classpath>

@ -0,0 +1,6 @@
eclipse.preferences.version=1
encoding//src/main/java=UTF-8
encoding//src/main/resources=UTF-8
encoding//src/test/java=UTF-8
encoding//src/test/resources=UTF-8
encoding/<project>=UTF-8

@ -0,0 +1,8 @@
eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
org.eclipse.jdt.core.compiler.compliance=1.7
org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
org.eclipse.jdt.core.compiler.source=1.7

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activeProfiles=
eclipse.preferences.version=1
resolveWorkspaceProjects=false
version=1

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<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
<wb-module deploy-name="data-transfer-service">
<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
<property name="context-root" value="data-transfer-service"/>
<property name="java-output-path" value="/data-transfer-service/target/classes"/>
</wb-module>
</project-modules>

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<root>
<facet id="jst.jaxrs">
<node name="libprov">
<attribute name="provider-id" value="jaxrs-no-op-library-provider"/>
</node>
</facet>
</root>

@ -0,0 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<faceted-project>
<fixed facet="wst.jsdt.web"/>
<installed facet="java" version="1.7"/>
<installed facet="wst.jsdt.web" version="1.0"/>
<installed facet="jst.web" version="3.0"/>
<installed facet="jst.jaxrs" version="2.0"/>
</faceted-project>

@ -0,0 +1 @@
org.eclipse.wst.jsdt.launching.baseBrowserLibrary

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disabled=06target
eclipse.preferences.version=1

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${gcube.license}

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The gCube System - ${name}
--------------------------------------------------
${description}
${gcube.description}
${gcube.funding}
Version
--------------------------------------------------
${version} (${buildDate})
Please see the file named "changelog.xml" in this directory for the release notes.
Authors
--------------------------------------------------
* Fabio Sinibaldi (fabio.sinibaldi-AT-isti.cnr.it) Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR, Pisa (Italy).
Maintainers
-----------
* Fabio Sinibaldi (fabio.sinibaldi-AT-isti.cnr.it) Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR, Pisa (Italy).
Download information
--------------------------------------------------
Source code is available from SVN:
${scm.url}
Binaries can be downloaded from the gCube website:
${gcube.website}
Installation
--------------------------------------------------
Installation documentation is available on-line in the gCube Wiki:
${gcube.wikiRoot}/Data_Transfer_2
Documentation
--------------------------------------------------
Documentation is available on-line in the gCube Wiki:
${gcube.wikiRoot}/Data_Transfer_2
${gcube.wikiRoot}/How_to_use_Data_Transfer_2
Support
--------------------------------------------------
Bugs and support requests can be reported in the gCube issue tracking tool:
${gcube.issueTracking}
Licensing
--------------------------------------------------
This software is licensed under the terms you may find in the file named "LICENSE" in this directory.

@ -0,0 +1,13 @@
<ReleaseNotes>
<Changeset component="data-transfer-service-1.0.0" date="2016-02-22">
<Change>First Release</Change>
</Changeset>
<Changeset component="data-transfer-service-1.1.0" date="2016-09-09">
<Change>Added Destination</Change>
<Change>Added Plugin</Change>
</Changeset>
<Changeset component="data-transfer-service-1.2.0" date="2016-10-29">
<Change>Improved plugin management</Change>
<Change>Endorsed decompress-plugin</Change>
</Changeset>
</ReleaseNotes>

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<assembly
xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0 http://maven.apache.org/xsd/assembly-1.1.0.xsd">
<id>servicearchive</id>
<formats>
<format>tar.gz</format>
</formats>
<baseDirectory>/</baseDirectory>
<fileSets>
<fileSet>
<directory>${distroDirectory}</directory>
<outputDirectory>/</outputDirectory>
<useDefaultExcludes>true</useDefaultExcludes>
<includes>
<include>README</include>
<include>LICENSE</include>
<include>changelog.xml</include>
</includes>
<fileMode>755</fileMode>
<filtered>true</filtered>
</fileSet>
</fileSets>
<files>
<file>
<source>target/${build.finalName}.${project.packaging}</source>
<outputDirectory>/${artifactId}</outputDirectory>
</file>
</files>
</assembly>

@ -0,0 +1,11 @@
<application mode='online'>
<name>data-transfer-service</name>
<group>DataTransfer</group>
<version>${version}</version>
<description>Data Tansfer Service</description>
<!-- <servlets>
<servlet name="org.gcube.data.analysis.rconnector.RConnector" entryPointName="connector"/>
</servlets> -->
<local-persistence location='target' />
</application>

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<?xml version="1.0" encoding="UTF-8"?>
<Resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<ID />
<Type>Service</Type>
<Profile>
<Description>${description}</Description>
<Class>DataTransfer</Class>
<Name>${artifactId}</Name>
<Version>1.0.0</Version>
<Packages>
<Software>
<Name>${artifactId}</Name>
<Version>${version}</Version>
<MavenCoordinates>
<groupId>${groupId}</groupId>
<artifactId>${artifactId}</artifactId>
<version>${version}</version>
</MavenCoordinates>
<Files>
<File>${build.finalName}.jar</File>
</Files>
</Software>
</Packages>
</Profile>
</Resource>

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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.gcube.tools</groupId>
<artifactId>maven-parent</artifactId>
<version>LATEST</version>
</parent>
<groupId>org.gcube.data.transfer</groupId>
<artifactId>data-transfer-service</artifactId>
<version>2.0.0-SNAPSHOT</version>
<packaging>war</packaging>
<name>DataTransferService</name>
<scm>
<url>https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-transfer/${project.artifactId}</url>
</scm>
<properties>
<webappDirectory>${project.basedir}/src/main/webapp/WEB-INF</webappDirectory>
<distroDirectory>${project.basedir}/distro</distroDirectory>
<jersey-version>2.14</jersey-version>
<jersey-cdi-version>2.14</jersey-cdi-version>
<weld-version>2.2.4.Final</weld-version>
</properties>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>org.gcube.distribution</groupId>
<artifactId>maven-smartgears-bom</artifactId>
<version>LATEST</version>
<type>pom</type>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<dependency>
<groupId>org.gcube.data.transfer</groupId>
<artifactId>data-transfer-plugin-framework</artifactId>
<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
</dependency>
<!-- PLUGINS -->
<dependency>
<groupId>org.gcube.data.transfer</groupId>
<artifactId>decompress-archive-plugin</artifactId>
<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<!-- SMARTGEARS -->
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-smartgears-app</artifactId>
</dependency>
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-smartgears</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-io</artifactId>
<version>1.3.2</version>
</dependency>
<!-- jersey -->
<dependency>
<groupId>javax.ws.rs</groupId>
<artifactId>javax.ws.rs-api</artifactId>
<version>2.0</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-servlet</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers.glassfish</groupId>
<artifactId>jersey-gf-cdi</artifactId>
<version>${jersey-cdi-version}</version>
</dependency>
<dependency>
<groupId>javax.transaction</groupId>
<artifactId>javax.transaction-api</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.0.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-json-jackson</artifactId>
<version>${jersey-version}</version>
</dependency>
<!-- <dependency> -->
<!-- <groupId>org.glassfish.jersey.media</groupId> -->
<!-- <artifactId>jersey-media-moxy</artifactId> -->
<!-- <version>2.25.1</version> -->
<!-- </dependency> -->
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-multipart</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.bundles</groupId>
<artifactId>jaxrs-ri</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-common</artifactId>
<version>${jersey-version}</version>
</dependency>
<!-- weld -->
<dependency>
<groupId>javax.enterprise</groupId>
<artifactId>cdi-api</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>org.jboss.weld.servlet</groupId>
<artifactId>weld-servlet</artifactId>
<version>${weld-version}</version> <!-- 2.0.4 doesn't find implementations. 2.2.4 doesn't find CDI... -->
</dependency>
<dependency>
<groupId>org.jboss</groupId>
<artifactId>jandex</artifactId>
<version>1.2.2.Final</version>
</dependency>
<!-- test -->
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.0.13</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.test-framework.providers</groupId>
<artifactId>jersey-test-framework-provider-simple</artifactId>
<version>${jersey-version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<finalName>${project.artifactId}</finalName>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.4</version>
<configuration>
<warName>data-transfer-service</warName>
<failOnMissingWebXml>false</failOnMissingWebXml>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.6</version>
<executions>
<execution>
<id>copy-profile</id>
<goals>
<goal>copy-resources</goal>
</goals>
<phase>process-resources</phase>
<configuration>
<outputDirectory>${webappDirectory}</outputDirectory>
<resources>
<resource>
<directory>${distroDirectory}</directory>
<filtering>true</filtering>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.2</version>
<configuration>
<descriptors>
<descriptor>${distroDirectory}/descriptor.xml</descriptor>
</descriptors>
</configuration>
<executions>
<execution>
<id>servicearchive</id>
<phase>install</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
<description>Service used to receive data from other hosting nodes</description>
</project>

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package org.gcube.data.transfer.service;
import javax.ws.rs.ApplicationPath;
import org.gcube.data.transfer.model.ServiceConstants;
import org.glassfish.jersey.media.multipart.MultiPartFeature;
import org.glassfish.jersey.server.ResourceConfig;
@ApplicationPath(ServiceConstants.APPLICATION_PATH)
public class DTService extends ResourceConfig{
public DTService() {
super();
packages("org.gcube.data.transfer.service.transfers");
packages("org.glassfish.jersey.media.multipart");
packages("org.glassfish.jersey.media.multipart.internal");
// register(ProviderLoggingListener.class);
register(MultiPartFeature.class);
}
}

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package org.gcube.data.transfer.service;
import javax.inject.Inject;
import org.gcube.data.transfer.service.transfers.engine.RequestManager;
import org.gcube.data.transfer.service.transfers.engine.TicketManager;
import org.gcube.smartgears.ApplicationManager;
import org.gcube.smartgears.ContextProvider;
import org.gcube.smartgears.context.application.ApplicationContext;
import lombok.extern.slf4j.Slf4j;
@Slf4j
public class DTServiceAppManager implements ApplicationManager {
@Inject
RequestManager requests;
@Inject
TicketManager tickets;
ApplicationContext ctx = ContextProvider.get();
@Override
public void onInit() {
log.info("DT Application init");
}
@Override
public void onShutdown() {
log.info("DT Application shutdown");
log.debug("Shutting down request manager ...");
requests.shutdown();
log.debug("Shutting down ticket manager");
tickets.shutdown();
log.info("Done");
}
}

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package org.gcube.data.transfer.service;
import java.util.Set;
import javax.ws.rs.ext.Provider;
import org.glassfish.jersey.server.ResourceConfig;
import org.glassfish.jersey.server.model.ResourceModel;
import org.glassfish.jersey.server.monitoring.ApplicationEvent;
import org.glassfish.jersey.server.monitoring.ApplicationEventListener;
import org.glassfish.jersey.server.monitoring.RequestEvent;
import org.glassfish.jersey.server.monitoring.RequestEventListener;
@Provider
public class ProviderLoggingListener implements ApplicationEventListener {
@Override
public void onEvent(ApplicationEvent event) {
switch (event.getType()) {
case INITIALIZATION_FINISHED: {
System.out.println("*************** LISTING PROVIDERS ******************");
for(Class c: event.getProviders()){
System.out.println(c.getCanonicalName()+" \t "+ c);
}
System.out.println("*************** RESOURCE CONFIG ******************");
System.out.println(event.getResourceConfig());
System.out.println("*************** RESOURCE MODEL ******************");
System.out.println(event.getResourceModel());
break;
}
}
}
@Override
public RequestEventListener onRequest(RequestEvent requestEvent) {
return null;
}
}

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package org.gcube.data.transfer.service.transfers;
import javax.inject.Inject;
import javax.ws.rs.GET;
import javax.ws.rs.Path;
import javax.ws.rs.Produces;
import javax.ws.rs.WebApplicationException;
import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response.Status;
import org.gcube.data.transfer.model.ServiceConstants;
import org.gcube.data.transfer.model.TransferCapabilities;
import org.gcube.data.transfer.service.transfers.engine.CapabilitiesProvider;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Path(ServiceConstants.CAPABILTIES_SERVLET_NAME)
public class Capabilities {
@Inject
CapabilitiesProvider provider;
@GET
@Produces(MediaType.APPLICATION_JSON)
public TransferCapabilities getCapabilities(){
log.debug("Serving get capabilities");
try{
TransferCapabilities toReturn=provider.get();
log.debug("No exceptions here.. returning "+toReturn);
return toReturn;
}catch(Exception e){
log.debug("Unable to return capabilities.",e);
throw new WebApplicationException(Status.INTERNAL_SERVER_ERROR);
}
}
}

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package org.gcube.data.transfer.service.transfers;
import java.io.InputStream;
import java.net.MalformedURLException;
import java.net.URI;
import java.net.URISyntaxException;
import java.net.URL;
import javax.inject.Inject;
import javax.ws.rs.Consumes;
import javax.ws.rs.DefaultValue;
import javax.ws.rs.POST;
import javax.ws.rs.Path;
import javax.ws.rs.PathParam;
import javax.ws.rs.Produces;
import javax.ws.rs.QueryParam;
import javax.ws.rs.WebApplicationException;
import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response;
import javax.ws.rs.core.Response.Status;
import org.gcube.data.transfer.model.Destination;
import org.gcube.data.transfer.model.DestinationClashPolicy;
import org.gcube.data.transfer.model.ServiceConstants;
import org.gcube.data.transfer.model.TransferRequest;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.model.options.FileUploadOptions;
import org.gcube.data.transfer.model.options.HttpDownloadOptions;
import org.gcube.data.transfer.model.options.TransferOptions.TransferMethod;
import org.gcube.data.transfer.model.settings.FileUploadSettings;
import org.gcube.data.transfer.model.settings.HttpDownloadSettings;
import org.gcube.data.transfer.service.transfers.engine.RequestManager;
import org.glassfish.jersey.media.multipart.FormDataContentDisposition;
import org.glassfish.jersey.media.multipart.FormDataParam;
import lombok.extern.slf4j.Slf4j;
@Path(ServiceConstants.REST_SERVLET_NAME)
@Slf4j
public class REST {
@Inject
RequestManager requests;
// @Inject
// PersistenceProvider persistenceProvider;
// @Inject
// PluginManager pluginManager;
//
@QueryParam(ServiceConstants.DESTINATION_FILE_NAME) String destinationFileName;
@QueryParam(ServiceConstants.CREATE_DIRS) @DefaultValue("true") Boolean createDirs;
@QueryParam(ServiceConstants.ON_EXISTING_FILE) @DefaultValue("ADD_SUFFIX") DestinationClashPolicy onExistingFile;
@QueryParam(ServiceConstants.ON_EXISTING_DIR) @DefaultValue("APPEND") DestinationClashPolicy onExistingDirectory;
@QueryParam(ServiceConstants.SOURCE_ID) String sourceID;
@FormDataParam(ServiceConstants.MULTIPART_FILE) InputStream uploadedFile;
@FormDataParam(ServiceConstants.MULTIPART_FILE) FormDataContentDisposition uploadedFileDetails;
@POST
@Path("/{method}/{destinationId}/{subPath: .*}")
@Consumes(MediaType.WILDCARD)
@Produces(MediaType.APPLICATION_JSON)
public Object serveFileUpload(@PathParam("method") String methodString,
@PathParam("destinationId") String destinationID, @PathParam("subPath") String subPath){
try{
TransferRequest request=formRequestFromREST(methodString, destinationID, subPath);
log.info("Received REST Request {} ",request);
TransferTicket ticket=requests.put(request);
if(ticket.getSettings().getOptions().getMethod().equals(TransferMethod.FileUpload))
try {
return Response.created(new URI(ticket.getDestinationFileName())).build();
} catch (URISyntaxException e) {
throw new WebApplicationException("Internal ERROR "+e.getMessage(),e);
}
else{
return ticket;
}
}catch(WebApplicationException e){
log.error("Unable to serve request",e);
throw e;
}
}
private TransferRequest formRequestFromREST(String methodString,String destinationID,String subPath){
log.info("Creating TransferRequest from REST invocation method : {}, dest ID {}, sub Path {} ",methodString,destinationID,subPath);
TransferMethod method=null;
try{
method=TransferMethod.valueOf(methodString);
}catch (Throwable t) {
throw new WebApplicationException("Invalid selected method "+methodString,Status.BAD_REQUEST);}
Destination destination=new Destination();
destination.setCreateSubfolders(createDirs);
destination.setPersistenceId(destinationID);
destination.setSubFolder(subPath);
destination.setOnExistingSubFolder(onExistingDirectory);
TransferRequest resultingRequest=new TransferRequest();
resultingRequest.setDestinationSettings(destination);
switch(method){
case FileUpload : {
// if(destinationFileName==null) throw new WebApplicationException("Parameter "+ServiceConstants.DESTINATION_FILE_NAME+" is mandatory.",Status.BAD_REQUEST);
if(uploadedFileDetails==null) throw new WebApplicationException("Missing multipart "+ServiceConstants.MULTIPART_FILE+" details.",Status.BAD_REQUEST);
if(uploadedFile==null) throw new WebApplicationException("Missing multipart "+ServiceConstants.MULTIPART_FILE+" stream.",Status.BAD_REQUEST);
destination.setDestinationFileName(destinationFileName!=null?destinationFileName:uploadedFileDetails.getFileName());
FileUploadSettings uploadSettings=new FileUploadSettings(uploadedFile,new FileUploadOptions());
resultingRequest.setSettings(uploadSettings);
break;
}
case DirectTransfer :{
throw new WebApplicationException("Unsupported selected method "+methodString,Status.BAD_REQUEST);
}
case HTTPDownload :{
if(sourceID==null) throw new WebApplicationException("Parameter "+ServiceConstants.SOURCE_ID+" is mandatory.",Status.BAD_REQUEST);
destination.setDestinationFileName(destinationFileName==null?sourceID:destinationFileName);
try{
HttpDownloadSettings settings=new HttpDownloadSettings(new URL(sourceID), new HttpDownloadOptions());
resultingRequest.setSettings(settings);
break;
}catch(MalformedURLException e){
throw new WebApplicationException("Source "+sourceID+" is not a valid URL.",Status.BAD_REQUEST);
}
}
default: throw new WebApplicationException("Unsupported selected method "+methodString,Status.BAD_REQUEST);
}
return resultingRequest;
}
}

@ -0,0 +1,68 @@
package org.gcube.data.transfer.service.transfers;
import javax.inject.Inject;
import javax.validation.constraints.NotNull;
import javax.ws.rs.Consumes;
import javax.ws.rs.POST;
import javax.ws.rs.Path;
import javax.ws.rs.Produces;
import javax.ws.rs.core.MediaType;
import org.gcube.data.transfer.model.ServiceConstants;
import org.gcube.data.transfer.model.TransferRequest;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.service.transfers.engine.RequestManager;
import lombok.extern.slf4j.Slf4j;
@Path(ServiceConstants.REQUESTS_SERVLET_NAME)
@Slf4j
public class Requests {
@Inject
RequestManager requests;
//********************* INJECT PARAMS
@POST
@Produces(MediaType.APPLICATION_JSON)
@Consumes(MediaType.APPLICATION_JSON)
public TransferTicket submitRequest(@NotNull TransferRequest theRequest){
log.info("Received transfer request : "+theRequest);
return requests.put(theRequest);
}
// @PUT
// @Path("/{method}/{destinationId}/{subPath: .*}")
// @Produces(MediaType.APPLICATION_JSON)
// public TransferTicket submitRESTRequest(@PathParam("method") String methodString,
// @PathParam("destinationId") String destinationID, @PathParam("subPath") String subPath){
// return handleRequest(formRequestFromREST(methodString, destinationID, subPath));
// }
// private TransferTicket handleRequest(TransferRequest toHandle){
//
// toHandle.setId(UUID.randomUUID().toString());
// boolean inserted=requests.put(toHandle);
//
// log.debug("Successfully inserted "+inserted);
//
// if(!inserted) throw new WebApplicationException(Status.INTERNAL_SERVER_ERROR);
// else
// try {
// return tickets.get(toHandle.getId());
// } catch (TicketNotFoundException e) {
// throw new WebApplicationException(Status.INTERNAL_SERVER_ERROR);
// }
// }
}

@ -0,0 +1,45 @@
package org.gcube.data.transfer.service.transfers;
import javax.inject.Inject;
import javax.validation.constraints.NotNull;
import javax.ws.rs.GET;
import javax.ws.rs.InternalServerErrorException;
import javax.ws.rs.NotFoundException;
import javax.ws.rs.Path;
import javax.ws.rs.PathParam;
import javax.ws.rs.Produces;
import javax.ws.rs.core.MediaType;
import lombok.extern.slf4j.Slf4j;
import org.gcube.data.transfer.model.ServiceConstants;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.service.transfers.engine.TicketManager;
import org.gcube.data.transfer.service.transfers.engine.faults.TicketNotFoundException;
@Path(ServiceConstants.STATUS_SERVLET_NAME)
@Slf4j
public class TransferStatus {
@Inject
private TicketManager manager;
@GET
@Path("/{"+ServiceConstants.TRANSFER_ID+"}")
@Produces(MediaType.APPLICATION_JSON)
public TransferTicket getTicket(@PathParam(ServiceConstants.TRANSFER_ID)@NotNull String requestId){
try{
log.debug("Returning status for id "+requestId);
return manager.get(requestId);
}catch(TicketNotFoundException e){
throw new NotFoundException();
}catch(Throwable t){
log.error("Unexpected exception ",t);
throw new InternalServerErrorException();
}
}
}

@ -0,0 +1,8 @@
package org.gcube.data.transfer.service.transfers.engine;
import org.gcube.data.transfer.model.TransferCapabilities;
public interface CapabilitiesProvider {
public TransferCapabilities get();
}

@ -0,0 +1,16 @@
package org.gcube.data.transfer.service.transfers.engine;
import java.io.File;
import java.util.Set;
import org.gcube.data.transfer.model.Destination;
import org.gcube.data.transfer.service.transfers.engine.faults.DestinationAccessException;
public interface PersistenceProvider {
public File getPersistenceFolderById(String persistenceId) throws DestinationAccessException;
public Set<String> getAvaileblContextIds();
File prepareDestination(Destination dest) throws DestinationAccessException;
}

@ -0,0 +1,16 @@
package org.gcube.data.transfer.service.transfers.engine;
import java.util.Map;
import org.gcube.data.transfer.model.PluginDescription;
import org.gcube.data.transfer.model.PluginInvocation;
import org.gcube.data.transfer.plugin.ExecutionReport;
import org.gcube.data.transfer.service.transfers.engine.faults.PluginExecutionException;
import org.gcube.data.transfer.service.transfers.engine.faults.PluginNotFoundException;
public interface PluginManager {
public Map<String,PluginDescription> getInstalledPlugins();
public ExecutionReport execute(PluginInvocation invocation)throws PluginNotFoundException,PluginExecutionException;
}

@ -0,0 +1,12 @@
package org.gcube.data.transfer.service.transfers.engine;
import org.gcube.data.transfer.model.TransferRequest;
import org.gcube.data.transfer.model.TransferTicket;
public interface RequestManager {
public TransferTicket put(TransferRequest request);
public void shutdown();
}

@ -0,0 +1,20 @@
package org.gcube.data.transfer.service.transfers.engine;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.service.transfers.engine.faults.TicketNotFoundException;
public interface TicketManager {
/**
* returns true if new
*
* @param toInsert
* @return
*/
public boolean insertUpdate(TransferTicket toInsert);
public TransferTicket get(String ticketId) throws TicketNotFoundException;
public void shutdown();
}

@ -0,0 +1,35 @@
package org.gcube.data.transfer.service.transfers.engine.faults;
public class DestinationAccessException extends ManagedException {
/**
*
*/
private static final long serialVersionUID = 4968214602073818019L;
public DestinationAccessException() {
// TODO Auto-generated constructor stub
}
public DestinationAccessException(String message) {
super(message);
// TODO Auto-generated constructor stub
}
public DestinationAccessException(Throwable cause) {
super(cause);
// TODO Auto-generated constructor stub
}
public DestinationAccessException(String message, Throwable cause) {
super(message, cause);
// TODO Auto-generated constructor stub
}
public DestinationAccessException(String message, Throwable cause, boolean enableSuppression,
boolean writableStackTrace) {
super(message, cause, enableSuppression, writableStackTrace);
// TODO Auto-generated constructor stub
}
}

@ -0,0 +1,35 @@
package org.gcube.data.transfer.service.transfers.engine.faults;
public class ManagedException extends Exception {
/**
*
*/
private static final long serialVersionUID = 1L;
public ManagedException() {
// TODO Auto-generated constructor stub
}
public ManagedException(String message) {
super(message);
// TODO Auto-generated constructor stub
}
public ManagedException(Throwable cause) {
super(cause);
// TODO Auto-generated constructor stub
}
public ManagedException(String message, Throwable cause) {
super(message, cause);
// TODO Auto-generated constructor stub
}
public ManagedException(String message, Throwable cause,
boolean enableSuppression, boolean writableStackTrace) {
super(message, cause, enableSuppression, writableStackTrace);
// TODO Auto-generated constructor stub
}
}

@ -0,0 +1,35 @@
package org.gcube.data.transfer.service.transfers.engine.faults;
public class NotSupportedMethodException extends Exception {
/**
*
*/
private static final long serialVersionUID = 1L;
public NotSupportedMethodException() {
// TODO Auto-generated constructor stub
}
public NotSupportedMethodException(String message) {
super(message);
// TODO Auto-generated constructor stub
}
public NotSupportedMethodException(Throwable cause) {
super(cause);
// TODO Auto-generated constructor stub
}
public NotSupportedMethodException(String message, Throwable cause) {
super(message, cause);
// TODO Auto-generated constructor stub
}
public NotSupportedMethodException(String message, Throwable cause,
boolean enableSuppression, boolean writableStackTrace) {
super(message, cause, enableSuppression, writableStackTrace);
// TODO Auto-generated constructor stub
}
}

@ -0,0 +1,35 @@
package org.gcube.data.transfer.service.transfers.engine.faults;
public class PluginExecutionException extends ManagedException {
/**
*
*/
private static final long serialVersionUID = 2681096696757651730L;
public PluginExecutionException() {
// TODO Auto-generated constructor stub
}
public PluginExecutionException(String message) {
super(message);
// TODO Auto-generated constructor stub
}
public PluginExecutionException(Throwable cause) {
super(cause);
// TODO Auto-generated constructor stub
}
public PluginExecutionException(String message, Throwable cause) {
super(message, cause);
// TODO Auto-generated constructor stub
}
public PluginExecutionException(String message, Throwable cause, boolean enableSuppression,
boolean writableStackTrace) {
super(message, cause, enableSuppression, writableStackTrace);
// TODO Auto-generated constructor stub
}
}

@ -0,0 +1,35 @@
package org.gcube.data.transfer.service.transfers.engine.faults;
public class PluginNotFoundException extends ManagedException {
/**
*
*/
private static final long serialVersionUID = -5169583804790487322L;
public PluginNotFoundException() {
// TODO Auto-generated constructor stub
}
public PluginNotFoundException(String message) {
super(message);
// TODO Auto-generated constructor stub
}
public PluginNotFoundException(Throwable cause) {
super(cause);
// TODO Auto-generated constructor stub
}
public PluginNotFoundException(String message, Throwable cause) {
super(message, cause);
// TODO Auto-generated constructor stub
}
public PluginNotFoundException(String message, Throwable cause, boolean enableSuppression,
boolean writableStackTrace) {
super(message, cause, enableSuppression, writableStackTrace);
// TODO Auto-generated constructor stub
}
}

@ -0,0 +1,36 @@
package org.gcube.data.transfer.service.transfers.engine.faults;
public class TicketNotFoundException extends Exception {
/**
*
*/
private static final long serialVersionUID = -5761719004322780267L;
public TicketNotFoundException() {
super();
// TODO Auto-generated constructor stub
}
public TicketNotFoundException(String message, Throwable cause,
boolean enableSuppression, boolean writableStackTrace) {
super(message, cause, enableSuppression, writableStackTrace);
// TODO Auto-generated constructor stub
}
public TicketNotFoundException(String message, Throwable cause) {
super(message, cause);
// TODO Auto-generated constructor stub
}
public TicketNotFoundException(String message) {
super(message);
// TODO Auto-generated constructor stub
}
public TicketNotFoundException(Throwable cause) {
super(cause);
// TODO Auto-generated constructor stub
}
}

@ -0,0 +1,194 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import java.io.BufferedInputStream;
import java.io.BufferedOutputStream;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.util.Map.Entry;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import org.gcube.data.transfer.model.PluginInvocation;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.model.TransferTicket.Status;
import org.gcube.data.transfer.model.options.TransferOptions.TransferMethod;
import org.gcube.data.transfer.model.settings.FileUploadSettings;
import org.gcube.data.transfer.model.settings.HttpDownloadSettings;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import org.gcube.data.transfer.service.transfers.engine.faults.ManagedException;
import org.gcube.data.transfer.service.transfers.engine.faults.NotSupportedMethodException;
import lombok.extern.slf4j.Slf4j;
@Slf4j
public abstract class AbstractTicketHandler {
private TransferTicket ticket;
PersistenceProvider persistenceProvider;
PluginManager pluginManager;
public AbstractTicketHandler(PersistenceProvider persProv,PluginManager plugMan, TransferTicket ticket) {
this.persistenceProvider=persProv;
this.pluginManager=plugMan;
this.ticket=ticket;
}
protected void onStep(String msg,double progress,Status status,long transferredBytes){
ticket.setStatus(status);
ticket.setMessage(msg);
ticket.setPercent(progress);
ticket.setTransferredBytes(transferredBytes);
try{
long elapsedTime=System.currentTimeMillis()-ticket.getSubmissionTime().getValue().getTimeInMillis();
long average=(transferredBytes/((elapsedTime==0?1:elapsedTime)))*1000;
ticket.setAverageTransferSpeed(average);
}catch(Exception e){
log.warn("Unable to evaluate average ",e);
}
}
protected void onError(String message){
onStep(message,ticket.getPercent(),Status.ERROR);
}
protected void onStep(String msg,double progress,Status status){
onStep(msg,progress,status,ticket.getTransferredBytes());
}
public TransferTicket getTicket(){
return ticket;
}
public void handle(){
InputStream is=null;
BufferedOutputStream out=null;
Boolean completedTransfer=false;
File destination=null;
try{
if(ticket.getSettings().getOptions().getMethod().equals(TransferMethod.DirectTransfer))
throw new NotSupportedMethodException("Unable to manage request [ID "+ticket.getId()+"]. Method not supported : "+ticket.getSettings().getOptions().getMethod());
log.trace("Request handling started. Ticket is "+ticket);
onStep("Checking destination",0d,Status.TRANSFERRING,0l);
destination =persistenceProvider.prepareDestination(ticket.getDestinationSettings());
ticket.setDestinationFileName(destination.getAbsolutePath());
onStep("Opening input stream",0d,Status.TRANSFERRING,0l);
is=getInputStream();
try{
out=new BufferedOutputStream(new FileOutputStream(destination));
} catch (IOException e) {
log.warn("Unable to create destination file.",e);
throw new ManagedException("Cannot save file in host");
}
transferStream(is, out);
completedTransfer=true;
// IF TRANSFER FAILS, EXCEPTIONS AR THROWN
//Plugin execution
if(ticket.getPluginInvocations()!=null){
for(PluginInvocation invocation:ticket.getPluginInvocations()){
log.debug("Execution {}",invocation);
if(invocation.getParameters().containsValue(PluginInvocation.DESTINATION_FILE_PATH)){
log.debug("Checking for param value : "+PluginInvocation.DESTINATION_FILE_PATH);
for(Entry<String,String> param:invocation.getParameters().entrySet())
if(param.getValue().equals(PluginInvocation.DESTINATION_FILE_PATH)){
log.debug("Setting {} = {} ",param.getKey(),ticket.getDestinationFileName());
param.setValue(ticket.getDestinationFileName());
}
}
onStep("Executing invocation "+invocation.getPluginId(),1d,Status.PLUGIN_EXECUTION);
pluginManager.execute(invocation);
}
}
onStep("Completed transfer",1d,Status.SUCCESS);
}catch(NotSupportedMethodException e){
onError(e.getMessage());
}catch(ManagedException e){
onError(e.getMessage());
}catch(Throwable t){
onError("Unexpected error while downloading : "+t.getMessage());
log.error("Unexpected error occurred",t);
}finally{
log.debug("Finalizing transfer, ticket ID {} ",ticket.getId());
if(out!=null)IOUtils.closeQuietly(out);
if(is!=null)IOUtils.closeQuietly(is);
if((!completedTransfer)&& (destination!=null) && (destination.exists())) {
log.debug("Removing incomplete transfer..");
try{
FileUtils.forceDelete(destination);
}catch(Exception e){
log.warn("Unable to clean {} ",destination);
}
}
}
}
private void transferStream(InputStream in, OutputStream out) throws ManagedException{
long receivedTotal=0l;
try{
byte[] internalBuf=new byte[1024];
int received=0;
while ((received=in.read(internalBuf))!=-1){
out.write(internalBuf,0,received);
receivedTotal+=received;
onStep("Transferring",0d,Status.TRANSFERRING,receivedTotal);
}
out.flush();
}catch(IOException e){
log.debug("Unable to read from source",e);
throw new ManagedException("Unable to read from source.");
}
log.debug("Completed transfer phase for ticket ID {}. Transferred {} bytes. ",ticket.getId(),receivedTotal);
}
private InputStream getInputStream() throws ManagedException{
switch(ticket.getSettings().getOptions().getMethod()){
case HTTPDownload:{
try{
HttpDownloadSettings options=(HttpDownloadSettings) (ticket.getSettings());
return new BufferedInputStream(options.getSource().openStream());
}catch(Exception e){
log.debug("Unable to open connection ",e);
throw new ManagedException("Cannot open connection to source");
}
}
case FileUpload :{
try{
FileUploadSettings options=(FileUploadSettings) (ticket.getSettings());
return new BufferedInputStream(options.getPassedStream());
}catch(Exception e){
log.debug("Unable to open connection ",e);
throw new ManagedException("Cannot open connection to source");
}
}
default:
throw new ManagedException(ticket.getSettings().getOptions().getMethod()+" cannot be managed");
}
}
}

@ -0,0 +1,102 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import java.util.HashSet;
import javax.inject.Inject;
import javax.inject.Singleton;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.data.transfer.model.PluginDescription;
import org.gcube.data.transfer.model.TransferCapabilities;
import org.gcube.data.transfer.model.options.HttpDownloadOptions;
import org.gcube.data.transfer.model.options.TransferOptions;
import org.gcube.data.transfer.service.transfers.engine.CapabilitiesProvider;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import org.gcube.smartgears.ContextProvider;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.context.application.ApplicationContext;
import lombok.Synchronized;
@Singleton
public class CapabilitiesProviderImpl implements CapabilitiesProvider {
private TransferCapabilities capabilities=null;
private PersistenceProvider persistenceProvider;
private PluginManager pluginManager;
@Inject
public CapabilitiesProviderImpl(PersistenceProvider persistenceProvider,PluginManager pluginManager) {
this.persistenceProvider = persistenceProvider;
this.pluginManager=pluginManager;
}
@Override @Synchronized
public TransferCapabilities get() {
if(capabilities==null)capabilities=getCapabilities();
return capabilities;
}
private TransferCapabilities getCapabilities(){
ApplicationContext context=ContextProvider.get();
ContainerConfiguration configuration=context.container().configuration();
String hostName=configuration.hostname();
String id=context.profile(GCoreEndpoint.class).id();
Integer port=configuration.port();
HashSet<TransferOptions> meansOfTransfer=new HashSet<TransferOptions>();
meansOfTransfer.add(HttpDownloadOptions.DEFAULT);
HashSet<PluginDescription> plugins=new HashSet<PluginDescription>(pluginManager.getInstalledPlugins().values());
return new TransferCapabilities(id,hostName,port,meansOfTransfer,plugins,persistenceProvider.getAvaileblContextIds());
}
// private static String getHostname() throws Exception {
// String OS = System.getProperty("os.name").toLowerCase();
// log.debug("Getting hostname..");
// String hostName=null;
// if (OS.indexOf("win") >= 0) {
// log.debug("Detected windows..");
// hostName=System.getenv("COMPUTERNAME");
// if(hostName==null || hostName.equals("")){
// log.debug("System env not found, trying via hostname command..");
// hostName=execReadToString("hostname");
// }
// } else
// if (OS.indexOf("nix") >= 0 || OS.indexOf("nux") >= 0) {
// log.debug("Detected linux..");
// hostName= System.getenv("HOSTNAME");
// if(hostName==null || hostName.equals("")){
// log.debug("System env not found, trying via hostname command..");
// hostName=execReadToString("hostname -f");
// }
// if(hostName==null || hostName.equals("")){
// log.debug("Hostname command didn't work, trying via hostname file..");
// hostName=execReadToString("cat /etc/hostname");
// }
// }else throw new Exception("OS not detected");
// return hostName;
// }
// public static String execReadToString(String execCommand) throws IOException {
// Process proc = Runtime.getRuntime().exec(execCommand);
// try (InputStream stream = proc.getInputStream()) {
// try (Scanner s = new Scanner(stream).useDelimiter("\\A")) {
// return s.hasNext() ? s.next() : "";
// }
// }
// }
}

@ -0,0 +1,31 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import javax.ws.rs.WebApplicationException;
import javax.ws.rs.core.Response.Status;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import lombok.extern.slf4j.Slf4j;
@Slf4j
public class LocalRequestHandler extends AbstractTicketHandler{
public LocalRequestHandler(PersistenceProvider persProv, PluginManager plugMan, TransferTicket ticket) {
super(persProv, plugMan, ticket);
}
@Override
protected void onStep(String msg, double progress, org.gcube.data.transfer.model.TransferTicket.Status status,
long transferredBytes) {
super.onStep(msg, progress, status, transferredBytes);
log.trace("Stepping upload. Relative Ticket {} ",getTicket());
}
@Override
protected void onError(String message) {
log.error("Unable to manage upload request ticket {} MSG {} ",getTicket(),message);
throw new WebApplicationException("Internal ERROR "+message,Status.INTERNAL_SERVER_ERROR);
}
}

@ -0,0 +1,137 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import java.io.File;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Paths;
import java.util.HashSet;
import java.util.Set;
import javax.inject.Singleton;
import org.gcube.data.transfer.model.Destination;
import org.gcube.data.transfer.model.DestinationClashPolicy;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.faults.DestinationAccessException;
import org.gcube.smartgears.ContextProvider;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.context.application.ApplicationContext;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Singleton
public class PersistenceProviderImpl implements PersistenceProvider {
@Override
public File getPersistenceFolderById(String persistenceId) throws DestinationAccessException {
File toReturn=null;
log.debug("looking for persistence ID : {}",persistenceId);
if(persistenceId.equalsIgnoreCase(Destination.DEFAULT_PERSISTENCE_ID)){
log.debug("Persistence ID is default");
ApplicationContext context=ContextProvider.get();
toReturn=new File(context.persistence().location());
}else{
for(ApplicationConfiguration config:ContextProvider.get().container().configuration().apps()){
if(config.context().equals(persistenceId)){
log.debug("Found persistence ID {}",persistenceId);
toReturn= new File(config.persistence().location());
break;
}
}
}
if(toReturn== null) throw new DestinationAccessException("Persistence ID "+persistenceId+" not found.");
if(!toReturn.exists()) throw new DestinationAccessException("Persistence ID "+persistenceId+", location "+toReturn.getAbsolutePath()+" location doesn't exists.");
if(!toReturn.canWrite()) throw new DestinationAccessException("Cannot write to Persistence ID "+persistenceId+", location "+toReturn.getAbsolutePath()+" .");
if(!toReturn.isDirectory()) throw new DestinationAccessException("Persistence ID "+persistenceId+", location "+toReturn.getAbsolutePath()+" is a directory.");
if(!toReturn.canWrite()) throw new DestinationAccessException("Cannot write to Persistence ID "+persistenceId+", location "+toReturn.getAbsolutePath()+" .");
return toReturn;
}
@Override
public Set<String> getAvaileblContextIds() {
HashSet<String> toReturn=new HashSet<>();
for(ApplicationConfiguration config:ContextProvider.get().container().configuration().apps()){
String toAddID=config.context();
if(toAddID.startsWith("/")) toAddID=toAddID.substring(1);
toReturn.add(toAddID);
}
return toReturn;
}
@Override
public File prepareDestination(Destination dest) throws DestinationAccessException{
File persistenceFolder=getPersistenceFolderById(dest.getPersistenceId());
if(!persistenceFolder.canWrite()) throw new DestinationAccessException("Cannot write to selecte persistenceFolder [ID :"+dest.getPersistenceId()+"]");
log.debug("Got Persistence folder ID {}, PATH {}",persistenceFolder.getAbsolutePath(),dest.getPersistenceId());
String subFolderName=dest.getSubFolder();
File subFolder=persistenceFolder;
if(subFolderName!=null){
log.debug("Looking for subFolder : "+subFolder);
if(subFolderName.startsWith(File.pathSeparator)) throw new DestinationAccessException("SubFolder cannot be absolute.");
// String[] pathItems=subFolderName.split(File.pathSeparator);
// for(String subPath:pathItems){
//// Set<String> existingFiles=new HashSet<String>(Arrays.asList(subFolder.list()));
// subFolder=new File(subFolder,subPath);
// if(subFolder.exists()){
// if(!subFolder.canRead()) throw new DestinationAccessException("Cannot write to "+subFolder.getAbsolutePath());
// }else if(dest.getCreateSubfolders()) subFolder.mkdir();
// else throw new DestinationAccessException("Destination subfolder {} not found. Set createSubFolder=true to create intermediary directories.");
// }
subFolder=new File(persistenceFolder,subFolderName);
if(subFolder.exists()){
if(!subFolder.canRead()) throw new DestinationAccessException("Cannot write to "+subFolder.getAbsolutePath());
manageClash(dest.getOnExistingSubFolder(),subFolder);
}else if(dest.getCreateSubfolders()) subFolder.mkdirs();
else throw new DestinationAccessException("SubFolder not found. Use createSubFolders=true to create it.");
}
File destination=new File(subFolder,dest.getDestinationFileName());
if(destination.exists()) return manageClash(dest.getOnExistingFileName(),destination);
else {
try{
destination.createNewFile();
return destination;
}catch(IOException e){
throw new DestinationAccessException("Unable to create file ",e);
}
}
}
private static final File manageClash(DestinationClashPolicy policy, File clashing ) throws DestinationAccessException{
log.debug("Managing clash for {}, policy is {} ",clashing.getAbsolutePath(),policy);
boolean dir=clashing.isDirectory();
try{
switch(policy){
case ADD_SUFFIX : {
String clashingBaseName=clashing.getName();
int counter=1;
while(clashing.exists()){
clashing=new File(clashing.getParentFile(),clashingBaseName+"("+counter+")");
counter++;
}
if(dir)clashing.mkdirs();
else clashing.createNewFile();
break;
}
case FAIL: throw new DestinationAccessException("Found existing "+clashing.getAbsolutePath()+"policy is "+policy);
case REWRITE : {
Files.deleteIfExists(Paths.get(clashing.getAbsolutePath()));
if(dir)clashing.mkdirs();
else clashing.createNewFile();
break;
}
}
}catch(IOException e){
throw new DestinationAccessException("Unable to rewrite existing destination",e);
}
return clashing;
}
}

@ -0,0 +1,84 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import java.util.HashMap;
import java.util.Map;
import java.util.ServiceLoader;
import javax.inject.Singleton;
import org.gcube.data.transfer.model.PluginDescription;
import org.gcube.data.transfer.model.PluginInvocation;
import org.gcube.data.transfer.plugin.AbstractPlugin;
import org.gcube.data.transfer.plugin.AbstractPluginFactory;
import org.gcube.data.transfer.plugin.ExecutionReport;
import org.gcube.data.transfer.plugin.fails.PluginException;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import org.gcube.data.transfer.service.transfers.engine.faults.PluginExecutionException;
import org.gcube.data.transfer.service.transfers.engine.faults.PluginNotFoundException;
import lombok.Synchronized;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Singleton
public class PluginManagerImpl implements PluginManager {
private static ServiceLoader<AbstractPluginFactory> abstractFactoryLoader = null;
private static Map<String,PluginDescription> installedPlugins=null;
static{
abstractFactoryLoader=ServiceLoader.load(AbstractPluginFactory.class);
}
@Override
public Map<String, PluginDescription> getInstalledPlugins() {
return init();
}
@Synchronized
private static Map<String, PluginDescription> init() {
if(installedPlugins==null){
Map<String,PluginDescription> toSet=new HashMap<String,PluginDescription>();
log.trace("Loading plugins descriptors..");
for(AbstractPluginFactory factory:abstractFactoryLoader){
log.debug("loading {}, {} ",factory.getID(),factory.getDescription());
toSet.put(factory.getID(), new PluginDescription(factory.getID(), factory.getDescription(), factory.getParameters()));
}
installedPlugins=toSet;
}
return installedPlugins;
}
@Override
public ExecutionReport execute(PluginInvocation invocation)
throws PluginNotFoundException, PluginExecutionException {
log.debug("Executing invocation {} ",invocation);
AbstractPluginFactory factory=getFactory(invocation.getPluginId());
log.debug("Loaded factory {} ",factory.getClass());
log.debug("Checkign invocation .. ");
try{
factory.checkInvocation(invocation);
AbstractPlugin plugin=factory.createWorker(invocation);
return plugin.execute();
}catch(PluginException e){
throw new PluginExecutionException(e.getMessage(),e);
}
}
private AbstractPluginFactory getFactory(String pluginId) throws PluginNotFoundException{
for(AbstractPluginFactory factory:abstractFactoryLoader){
if(factory.getID().equals(pluginId)) return factory;
}
throw new PluginNotFoundException("Plugin with ID "+pluginId+" not found");
}
}

@ -0,0 +1,32 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.model.TransferTicket.Status;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import org.gcube.data.transfer.service.transfers.engine.TicketManager;
public class RequestHandler extends AbstractTicketHandler implements Runnable {
TicketManager ticketManager;
@Override
public void run() {
handle();
}
public RequestHandler(TicketManager ticketManager,TransferTicket ticket,PersistenceProvider persProv, PluginManager plugMan) {
super(persProv, plugMan,ticket);
this.ticketManager=ticketManager;
ticketManager.insertUpdate(ticket);
}
@Override
protected void onStep(String msg, double progress, Status status, long transferredBytes) {
super.onStep(msg, progress, status,transferredBytes);
ticketManager.insertUpdate(getTicket());
}
}

@ -0,0 +1,76 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import java.util.UUID;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import java.util.concurrent.TimeUnit;
import javax.inject.Inject;
import javax.inject.Singleton;
import org.gcube.data.transfer.model.TransferRequest;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.model.options.TransferOptions.TransferMethod;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import org.gcube.data.transfer.service.transfers.engine.RequestManager;
import org.gcube.data.transfer.service.transfers.engine.TicketManager;
import lombok.extern.slf4j.Slf4j;
@Singleton
@Slf4j
public class RequestManagerImpl implements RequestManager{
ExecutorService executor;
TicketManager ticketManager;
PersistenceProvider persistenceProvider;
PluginManager pluginManager;
@Inject
public RequestManagerImpl(TicketManager ticketManager,PersistenceProvider persistenceProvider,PluginManager pluginManager) {
executor=Executors.newCachedThreadPool();
this.persistenceProvider=persistenceProvider;
this.pluginManager=pluginManager;
this.ticketManager=ticketManager;
}
@Override
public TransferTicket put(TransferRequest request) {
request.setId(UUID.randomUUID().toString());
log.info("Managing request {} ",request);
TransferTicket toReturn=new TransferTicket(request);
if(request.getSettings().getOptions().getMethod().equals(TransferMethod.FileUpload)){
log.debug("Request is sync");
new LocalRequestHandler(persistenceProvider, pluginManager, toReturn).handle();
return toReturn;
}else{
log.debug("Request is async");
executor.execute(new RequestHandler(ticketManager,new TransferTicket(request),persistenceProvider,pluginManager));
return toReturn;
}
}
@Override
public void shutdown() {
log.debug("Calling shutdown..");
executor.shutdownNow();
long timeout=4;
TimeUnit unit=TimeUnit.SECONDS;
log.debug("Waiting termination.. {} {} ",timeout,unit);
boolean halted=false;
try {
halted=executor.awaitTermination(timeout, unit);
} catch (InterruptedException e) {
log.debug("Halted threads : {} ",halted);
}
}
}

@ -0,0 +1,98 @@
package org.gcube.data.transfer.service.transfers.engine.impl;
import java.util.Map.Entry;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.Executors;
import java.util.concurrent.ScheduledExecutorService;
import java.util.concurrent.TimeUnit;
import javax.inject.Singleton;
import lombok.extern.slf4j.Slf4j;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.service.transfers.engine.TicketManager;
import org.gcube.data.transfer.service.transfers.engine.faults.TicketNotFoundException;
@Slf4j
@Singleton
public class TransferTicketManagerImpl implements TicketManager{
private static ConcurrentHashMap<String, TTLContainer> theMap=new ConcurrentHashMap<>();
private static final ScheduledExecutorService scheduler = Executors.newScheduledThreadPool(1);
static{
scheduler.scheduleAtFixedRate(new Runnable() {
private static final long TTL =30*60*1000;
@Override
public void run() {
log.debug("Running Ticket cleaner, TTL is "+TTL);
int removed=0;
for(Entry<String,TTLContainer> entry:theMap.entrySet())
if(System.currentTimeMillis()-entry.getValue().getLastUsageTime()>TTL){
theMap.remove(entry.getKey());
removed++;
}
log.debug("Removed "+removed+" old tickets");
}
}, 30, 30, TimeUnit.MINUTES);
}
public class TTLContainer {
private long lastUsageTime=System.currentTimeMillis();
private TransferTicket theTicket;
public TTLContainer(TransferTicket theTicket) {
this.theTicket = theTicket;
}
private void update(){
lastUsageTime=System.currentTimeMillis();
}
public TransferTicket getTicket(){
update();
return theTicket;
}
public long getLastUsageTime() {
return lastUsageTime;
}
}
@Override
public boolean insertUpdate(TransferTicket toInsert) {
return (theMap.put(toInsert.getId(), new TTLContainer(toInsert))!=null);
}
@Override
public TransferTicket get(String ticketId) throws TicketNotFoundException {
if(theMap.containsKey(ticketId))return theMap.get(ticketId).getTicket();
else throw new TicketNotFoundException(String.format("Ticket [%s] not found. Request is probably served and outdated",ticketId));
}
@Override
public void shutdown() {
scheduler.shutdownNow();
long timeout=4;
TimeUnit unit=TimeUnit.SECONDS;
log.debug("Waiting termination.. {} {} ",timeout,unit);
boolean halted=false;
try {
halted=scheduler.awaitTermination(timeout, unit);
} catch (InterruptedException e) {
log.debug("Halted threads : {} ",halted);
}
}
}

@ -0,0 +1,5 @@
<beans xmlns="http://xmlns.jcp.org/xml/ns/javaee"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://xmlns.jcp.org/xml/ns/javaee
http://xmlns.jcp.org/xml/ns/javaee/beans_1_1.xsd" bean-discovery-mode="annotated">
</beans>

@ -0,0 +1,313 @@
European Union Public Licence V. 1.1
EUPL © the European Community 2007
This European Union Public Licence (the “EUPL”) applies to the Work or Software
(as defined below) which is provided under the terms of this Licence. Any use of
the Work, other than as authorised under this Licence is prohibited (to the
extent such use is covered by a right of the copyright holder of the Work).
The Original Work is provided under the terms of this Licence when the Licensor
(as defined below) has placed the following notice immediately following the
copyright notice for the Original Work:
Licensed under the EUPL V.1.1
or has expressed by any other mean his willingness to license under the EUPL.
1. Definitions
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- The Licence: this Licence.
- The Original Work or the Software: the software distributed and/or
communicated by the Licensor under this Licence, available as Source Code and
also as Executable Code as the case may be.
- Derivative Works: the works or software that could be created by the Licensee,
based upon the Original Work or modifications thereof. This Licence does not
define the extent of modification or dependence on the Original Work required
in order to classify a work as a Derivative Work; this extent is determined by
copyright law applicable in the country mentioned in Article 15.
- The Work: the Original Work and/or its Derivative Works.
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convenient for people to study and modify.
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meant to be interpreted by a computer as a program.
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the Work under the Licence.
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Licence, or otherwise contributes to the creation of a Derivative Work.
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Copyleft clause: If the Licensee distributes and/or communicates copies of the
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Distribution and/or Communication will be done under the terms of this Licence
or of a later version of this Licence unless the Original Work is expressly
distributed only under this version of the Licence. The Licensee (becoming
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or Derivative Work that alter or restrict the terms of the Licence.
Compatibility clause: If the Licensee Distributes and/or Communicates Derivative
Works or copies thereof based upon both the Original Work and another work
licensed under a Compatible Licence, this Distribution and/or Communication can
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“Compatible Licence” refers to the licences listed in the appendix attached to
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Provision of Source Code: When distributing and/or communicating copies of the
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Legal Protection: This Licence does not grant permission to use the trade names,
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reproducing the content of the copyright notice.
6. Chain of Authorship
The original Licensor warrants that the copyright in the Original Work granted
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Each Contributor warrants that the copyright in the modifications he/she brings
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power and authority to grant the Licence.
Each time You accept the Licence, the original Licensor and subsequent
Contributors grant You a licence to their contributions to the Work, under the
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7. Disclaimer of Warranty
The Work is a work in progress, which is continuously improved by numerous
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For the above reason, the Work is provided under the Licence on an “as is” basis
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Distribution and/or Communication by You of the Work or copies thereof.
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In case of any Distribution and/or Communication of the Work by means of
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12. Termination of the Licence
The Licence and the rights granted hereunder will terminate automatically upon
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Such a termination will not terminate the licences of any person who has
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Without prejudice of Article 9 above, the Licence represents the complete
agreement between the Parties as to the Work licensed hereunder.
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The European Commission may publish other linguistic versions and/or new
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Licence will be published with a unique version number.
All linguistic versions of this Licence, approved by the European Commission,
have identical value. Parties can take advantage of the linguistic version of
their choice.
14. Jurisdiction
Any litigation resulting from the interpretation of this License, arising
between the European Commission, as a Licensor, and any Licensee, will be
subject to the jurisdiction of the Court of Justice of the European Communities,
as laid down in article 238 of the Treaty establishing the European Community.
Any litigation arising between Parties, other than the European Commission, and
resulting from the interpretation of this License, will be subject to the
exclusive jurisdiction of the competent court where the Licensor resides or
conducts its primary business.
15. Applicable Law
This Licence shall be governed by the law of the European Union country where
the Licensor resides or has his registered office.
This licence shall be governed by the Belgian law if:
- a litigation arises between the European Commission, as a Licensor, and any
- Licensee; the Licensor, other than the European Commission, has no residence
- or registered office inside a European Union country.
===
Appendix
“Compatible Licences” according to article 5 EUPL are:
- GNU General Public License (GNU GPL) v. 2
- Open Software License (OSL) v. 2.1, v. 3.0
- Common Public License v. 1.0
- Eclipse Public License v. 1.0
- Cecill v. 2.0

@ -0,0 +1,78 @@
The gCube System - DataTransferService
--------------------------------------------------
Service used to receive data from other hosting nodes
This software is part of the gCube Framework (https://www.gcube-system.org/): an
open-source software toolkit used for building and operating Hybrid Data
Infrastructures enabling the dynamic deployment of Virtual Research Environments
by favouring the realisation of reuse oriented policies.
The projects leading to this software have received funding from a series of
European Union programmes including:
* the Sixth Framework Programme for Research and Technological Development -
DILIGENT (grant no. 004260);
* the Seventh Framework Programme for research, technological development and
demonstration - D4Science (grant no. 212488), D4Science-II (grant no.
239019),ENVRI (grant no. 283465), EUBrazilOpenBio (grant no. 288754), iMarine
(grant no. 283644);
* the H2020 research and innovation programme - BlueBRIDGE (grant no. 675680),
EGIEngage (grant no. 654142), ENVRIplus (grant no. 654182), Parthenos (grant
no. 654119), SoBigData (grant no. 654024);
Version
--------------------------------------------------
2.0.0-SNAPSHOT (2017-05-17)
Please see the file named "changelog.xml" in this directory for the release notes.
Authors
--------------------------------------------------
* Fabio Sinibaldi (fabio.sinibaldi-AT-isti.cnr.it) Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR, Pisa (Italy).
Maintainers
-----------
* Fabio Sinibaldi (fabio.sinibaldi-AT-isti.cnr.it) Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR, Pisa (Italy).
Download information
--------------------------------------------------
Source code is available from SVN:
https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-transfer/data-transfer-service
Binaries can be downloaded from the gCube website:
https://www.gcube-system.org/
Installation
--------------------------------------------------
Installation documentation is available on-line in the gCube Wiki:
https://wiki.gcube-system.org/gcube/index.php/Data_Transfer_2
Documentation
--------------------------------------------------
Documentation is available on-line in the gCube Wiki:
https://wiki.gcube-system.org/gcube/index.php/Data_Transfer_2
https://wiki.gcube-system.org/gcube/index.php/How_to_use_Data_Transfer_2
Support
--------------------------------------------------
Bugs and support requests can be reported in the gCube issue tracking tool:
https://support.d4science.org/projects/gcube/
Licensing
--------------------------------------------------
This software is licensed under the terms you may find in the file named "LICENSE" in this directory.

@ -0,0 +1,13 @@
<ReleaseNotes>
<Changeset component="data-transfer-service-1.0.0" date="2016-02-22">
<Change>First Release</Change>
</Changeset>
<Changeset component="data-transfer-service-1.1.0" date="2016-09-09">
<Change>Added Destination</Change>
<Change>Added Plugin</Change>
</Changeset>
<Changeset component="data-transfer-service-1.2.0" date="2016-10-29">
<Change>Improved plugin management</Change>
<Change>Endorsed decompress-plugin</Change>
</Changeset>
</ReleaseNotes>

@ -0,0 +1,30 @@
<assembly
xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0 http://maven.apache.org/xsd/assembly-1.1.0.xsd">
<id>servicearchive</id>
<formats>
<format>tar.gz</format>
</formats>
<baseDirectory>/</baseDirectory>
<fileSets>
<fileSet>
<directory>/home/fabio/workspaces/trunk_workspace/data-transfer-service/distro</directory>
<outputDirectory>/</outputDirectory>
<useDefaultExcludes>true</useDefaultExcludes>
<includes>
<include>README</include>
<include>LICENSE</include>
<include>changelog.xml</include>
</includes>
<fileMode>755</fileMode>
<filtered>true</filtered>
</fileSet>
</fileSets>
<files>
<file>
<source>target/data-transfer-service.war</source>
<outputDirectory>/data-transfer-service</outputDirectory>
</file>
</files>
</assembly>

@ -0,0 +1,11 @@
<application mode='online'>
<name>data-transfer-service</name>
<group>DataTransfer</group>
<version>2.0.0-SNAPSHOT</version>
<description>Data Tansfer Service</description>
<!-- <servlets>
<servlet name="org.gcube.data.analysis.rconnector.RConnector" entryPointName="connector"/>
</servlets> -->
<local-persistence location='target' />
</application>

@ -0,0 +1,27 @@
<?xml version="1.0" encoding="UTF-8"?>
<Resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<ID />
<Type>Service</Type>
<Profile>
<Description>Service used to receive data from other hosting nodes</Description>
<Class>DataTransfer</Class>
<Name>data-transfer-service</Name>
<Version>1.0.0</Version>
<Packages>
<Software>
<Name>data-transfer-service</Name>
<Version>2.0.0-SNAPSHOT</Version>
<MavenCoordinates>
<groupId>org.gcube.data.transfer</groupId>
<artifactId>data-transfer-service</artifactId>
<version>2.0.0-SNAPSHOT</version>
</MavenCoordinates>
<Files>
<File>data-transfer-service.jar</File>
</Files>
</Software>
</Packages>
</Profile>
</Resource>

@ -0,0 +1,22 @@
<web-app>
<servlet>
<servlet-name>org.gcube.data.transfer.service.DTService</servlet-name>
<servlet-class>org.glassfish.jersey.servlet.ServletContainer</servlet-class>
<init-param>
<param-name>javax.ws.rs.Application</param-name>
<param-value>org.gcube.data.transfer.service.DTService</param-value>
</init-param>
<init-param>
<param-name>jersey.config.server.provider.classnames</param-name>
<param-value>org.glassfish.jersey.media.multipart.MultiPartFeature</param-value>
</init-param>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet-mapping>
<servlet-name>org.gcube.data.transfer.service.DTService</servlet-name>
<url-pattern>/gcube/service/*</url-pattern>
</servlet-mapping>
</web-app>

@ -0,0 +1,14 @@
<configuration debug="true">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<!-- encoders are assigned the type
ch.qos.logback.classic.encoder.PatternLayoutEncoder by default -->
<encoder>
<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n</pattern>
</encoder>
</appender>
<root level="debug">
<appender-ref ref="STDOUT" />
</root>
</configuration>

@ -0,0 +1,34 @@
package org.gcube.data.transfer.service;
import java.util.Collections;
import java.util.HashSet;
import org.gcube.data.transfer.model.PluginDescription;
import org.gcube.data.transfer.model.TransferCapabilities;
import org.gcube.data.transfer.model.options.HttpDownloadOptions;
import org.gcube.data.transfer.model.options.TransferOptions;
import org.gcube.data.transfer.service.transfers.engine.CapabilitiesProvider;
import org.gcube.data.transfer.service.transfers.engine.impl.PluginManagerImpl;
import org.glassfish.hk2.api.Factory;
public class CapabilitiesProviderFactory implements Factory<CapabilitiesProvider> {
@Override
public void dispose(CapabilitiesProvider instance) {
}
@Override
public CapabilitiesProvider provide() {
return new CapabilitiesProvider(){
@Override
public TransferCapabilities get() {
return new TransferCapabilities("12345", "localhost", 80,
Collections.singleton((TransferOptions)HttpDownloadOptions.DEFAULT),
new HashSet<PluginDescription>(new PluginManagerImpl().getInstalledPlugins().values())
,Collections.<String> emptySet());
}
};
}
}

@ -0,0 +1,16 @@
package org.gcube.data.transfer.service;
import java.io.File;
import org.gcube.data.transfer.service.transfers.engine.faults.DestinationAccessException;
public class ClashPolicyTest {
public static void main(String[] args) throws DestinationAccessException {
File dir=new File ("/home/fabio/workspaces/DT_TESTS");
dir.mkdirs();
// System.out.println(RequestHandler.manageClash(DestinationClashPolicy.ADD_SUFFIX, new File(dir,"clashing.file")).getAbsolutePath());
}
}

@ -0,0 +1,21 @@
package org.gcube.data.transfer.service;
import javax.ws.rs.WebApplicationException;
import javax.ws.rs.core.Response;
import javax.ws.rs.ext.ExceptionMapper;
import javax.ws.rs.ext.Provider;
@Provider
public class DebugExceptionMapper implements ExceptionMapper<Exception> {
@Override
public Response toResponse(Exception exception) {
exception.printStackTrace();
Response toReturn=null;
if(exception instanceof WebApplicationException)
toReturn=((WebApplicationException)exception).getResponse();
else
toReturn=Response.serverError().entity(exception.getMessage()).build();
return toReturn;
}
}

@ -0,0 +1,45 @@
package org.gcube.data.transfer.service;
import java.io.File;
import java.io.IOException;
import java.util.Collections;
import java.util.Set;
import org.gcube.data.transfer.model.Destination;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.faults.DestinationAccessException;
import org.glassfish.hk2.api.Factory;
class PersistenceProviderFactory implements Factory<PersistenceProvider>{
@Override
public PersistenceProvider provide() {
return new PersistenceProvider() {
@Override
public File getPersistenceFolderById(String persistenceId) throws DestinationAccessException {
return new File(System.getProperty("java.io.tmpdir"));
}
@Override
public Set<String> getAvaileblContextIds() {
return Collections.emptySet();
}
@Override
public File prepareDestination(Destination dest) throws DestinationAccessException {
try {
return File.createTempFile("dest", "");
} catch (IOException e) {
return null;
}
}
};
}
@Override
public void dispose(PersistenceProvider arg0) {
// TODO Auto-generated method stub
}
}

@ -0,0 +1,23 @@
package org.gcube.data.transfer.service;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import org.gcube.data.transfer.service.transfers.engine.impl.PluginManagerImpl;
import org.glassfish.hk2.api.Factory;
public class PluginManagerFactory implements Factory<PluginManager> {
static PluginManagerImpl impl=new PluginManagerImpl();
@Override
public void dispose(PluginManager arg0) {
// TODO Auto-generated method stub
}
@Override
public PluginManager provide() {
return impl;
}
}

@ -0,0 +1,21 @@
package org.gcube.data.transfer.service;
import org.gcube.data.transfer.service.transfers.engine.RequestManager;
import org.gcube.data.transfer.service.transfers.engine.impl.RequestManagerImpl;
import org.glassfish.hk2.api.Factory;
public class RequestManagerFactory implements Factory<RequestManager> {
@Override
public void dispose(RequestManager instance) {
}
@Override
public RequestManager provide() {
return new RequestManagerImpl(new TicketManagerProvider().provide(),
new PersistenceProviderFactory().provide(),
new PluginManagerFactory().provide());
}
}

@ -0,0 +1,132 @@
package org.gcube.data.transfer.service;
import java.io.File;
import java.net.MalformedURLException;
import java.net.URL;
import javax.ws.rs.NotFoundException;
import javax.ws.rs.client.Entity;
import javax.ws.rs.client.WebTarget;
import javax.ws.rs.core.Application;
import javax.ws.rs.core.MediaType;
import org.gcube.data.transfer.model.Destination;
import org.gcube.data.transfer.model.ServiceConstants;
import org.gcube.data.transfer.model.TransferCapabilities;
import org.gcube.data.transfer.model.TransferRequest;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.model.TransferTicket.Status;
import org.gcube.data.transfer.model.options.HttpDownloadOptions;
import org.gcube.data.transfer.model.settings.HttpDownloadSettings;
import org.gcube.data.transfer.service.transfers.Capabilities;
import org.gcube.data.transfer.service.transfers.engine.CapabilitiesProvider;
import org.gcube.data.transfer.service.transfers.engine.PersistenceProvider;
import org.gcube.data.transfer.service.transfers.engine.PluginManager;
import org.gcube.data.transfer.service.transfers.engine.RequestManager;
import org.gcube.data.transfer.service.transfers.engine.TicketManager;
import org.glassfish.hk2.utilities.binding.AbstractBinder;
import org.glassfish.jersey.client.ClientConfig;
import org.glassfish.jersey.media.multipart.FormDataMultiPart;
import org.glassfish.jersey.media.multipart.MultiPartFeature;
import org.glassfish.jersey.media.multipart.file.FileDataBodyPart;
import org.glassfish.jersey.server.ResourceConfig;
import org.glassfish.jersey.test.JerseyTest;
import org.junit.Assert;
import org.junit.Test;
public class TestCall extends JerseyTest {
public static class MyBinder extends AbstractBinder{
public MyBinder() {
super();
// TODO Auto-generated constructor stub
}
@Override
protected void configure() {
bindFactory(TicketManagerProvider.class).to(TicketManager.class);
bindFactory(CapabilitiesProviderFactory.class).to(CapabilitiesProvider.class);
bindFactory(RequestManagerFactory.class).to(RequestManager.class);
bindFactory(PersistenceProviderFactory.class).to(PersistenceProvider.class);
bindFactory(PluginManagerFactory.class).to(PluginManager.class);
}
}
@Override
protected Application configure() {
System.out.println("Configuration for "+ServiceConstants.APPLICATION_PATH);
ResourceConfig config= new ResourceConfig(Capabilities.class,ProviderLoggingListener.class);
config.register(new MyBinder());
config.register(DebugExceptionMapper.class);
//Multipart
config.packages("org.glassfish.jersey.media.multipart");
config.packages("org.gcube.data.transfer.service.transfers");
config.register(MultiPartFeature.class);
return config;
}
@Override
protected void configureClient(ClientConfig config) {
// TODO Auto-generated method stub
super.configureClient(config);
config.register(MultiPartFeature.class);
}
@Test
public void capabilities(){
WebTarget target=target(ServiceConstants.CAPABILTIES_SERVLET_NAME);
System.err.println(target.getUri());
System.out.println(target.request(MediaType.APPLICATION_JSON).get(TransferCapabilities.class));
}
@Test(expected=NotFoundException.class)
public void testTicketNotFound(){
System.out.println(getTicketById("myVeryLongestId"));
}
@Test
public void transfer() throws MalformedURLException{
TransferRequest request=new TransferRequest("", new HttpDownloadSettings(new URL("http://data.d4science.org/bm1sRTg0Y1ZZZHRraUZuNG1IUGdvOUVFMnlOcTlFRmlHbWJQNStIS0N6Yz0"), HttpDownloadOptions.DEFAULT),new Destination("something"));
TransferTicket submissionResponse=submit(request);
System.out.println("Obtained "+submissionResponse);
boolean continuePolling=true;
do{
TransferTicket ticket=getTicketById(submissionResponse.getId());
System.out.println("Status : "+ticket);
continuePolling=ticket.getStatus().equals(Status.PENDING)||ticket.getStatus().equals(Status.TRANSFERRING)||ticket.getStatus().equals(Status.WAITING);
try{
Thread.sleep(1000);
}catch(InterruptedException e){}
}while(continuePolling);
}
@Test
public void RESTUpload(){
FormDataMultiPart multipart = new FormDataMultiPart();
File toSend=new File("/home/fabio/life@dev2.d4science.org");
Assert.assertTrue(toSend!=null);
Assert.assertTrue(toSend.exists());
multipart.bodyPart(new FileDataBodyPart(ServiceConstants.MULTIPART_FILE, toSend));
WebTarget target=target(ServiceConstants.REST_SERVLET_NAME).path(ServiceConstants.REST_FILE_UPLOAD).path("data-transfer-service").path("my/sub/path");
System.out.println(target.request().post(Entity.entity(multipart, multipart.getMediaType())));
}
private TransferTicket getTicketById(String id){
return target(ServiceConstants.STATUS_SERVLET_NAME).path(id).request(MediaType.APPLICATION_JSON).get(TransferTicket.class);
}
private TransferTicket submit(TransferRequest req){
return target(ServiceConstants.REQUESTS_SERVLET_NAME).request(MediaType.APPLICATION_JSON).post(Entity.entity(req,MediaType.APPLICATION_JSON),TransferTicket.class);
}
}

@ -0,0 +1,20 @@
package org.gcube.data.transfer.service;
import java.util.Map;
import org.gcube.data.transfer.model.PluginDescription;
import org.gcube.data.transfer.service.transfers.engine.impl.PluginManagerImpl;
import org.junit.Assert;
import org.junit.Test;
public class TestPlugins {
@Test
public void testPlugins(){
Map<String,PluginDescription> plugins=new PluginManagerImpl().getInstalledPlugins();
Assert.assertNotNull(plugins);
System.out.println(plugins);
}
}

@ -0,0 +1,41 @@
package org.gcube.data.transfer.service;
import java.net.MalformedURLException;
import java.net.URL;
import java.util.UUID;
import org.gcube.data.transfer.model.TransferRequest;
import org.gcube.data.transfer.model.TransferTicket;
import org.gcube.data.transfer.model.options.HttpDownloadOptions;
import org.gcube.data.transfer.model.settings.HttpDownloadSettings;
import org.gcube.data.transfer.model.utils.DateWrapper;
import org.gcube.data.transfer.service.transfers.engine.TicketManager;
import org.gcube.data.transfer.service.transfers.engine.faults.TicketNotFoundException;
import org.gcube.data.transfer.service.transfers.engine.impl.TransferTicketManagerImpl;
import org.glassfish.hk2.api.Factory;
public class TicketManagerProvider implements Factory<TicketManager> {
@Override
public void dispose(TicketManager instance) {
}
@Override
public TicketManager provide() {
return new TransferTicketManagerImpl(){
// @Override
// public TransferTicket get(String ticketId)
// throws TicketNotFoundException{
// URL url=null;
// try{
// url=new URL("http://some.where.com");
// }catch(MalformedURLException e){}
// TransferRequest request=new TransferRequest(UUID.randomUUID().toString(), new HttpDownloadSettings(url,new HttpDownloadOptions()));
// return new TransferTicket(request, org.gcube.data.transfer.model.TransferTicket.Status.STOPPED, 1005467l, .57d, 123345, new DateWrapper(),"/dev/null","bona");
//// throw new TicketNotFoundException();
// }
};
}
}

@ -0,0 +1,14 @@
<configuration debug="true">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<!-- encoders are assigned the type
ch.qos.logback.classic.encoder.PatternLayoutEncoder by default -->
<encoder>
<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n</pattern>
</encoder>
</appender>
<root level="debug">
<appender-ref ref="STDOUT" />
</root>
</configuration>
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