185 lines
5.7 KiB
Java
Executable File
185 lines
5.7 KiB
Java
Executable File
package org.gcube.portlets.user.dataminermanagertester.server.testconfig;
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import java.util.ArrayList;
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***REMOVED***
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import org.gcube.data.analysis.dataminermanagercl.shared.data.OutputData;
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import org.gcube.data.analysis.dataminermanagercl.shared.data.output.MapResource;
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import org.gcube.data.analysis.dataminermanagercl.shared.data.output.Resource;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.EnumParameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.ObjectParameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.Parameter;
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***REMOVED***
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***REMOVED***
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***REMOVED***
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/**
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*
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* @author Giancarlo Panichi
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*
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*
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*/
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public class BionymLocalTest implements DMTest {
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private static Logger logger = LoggerFactory.getLogger(BionymLocalTest.class);
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private static final String id = "org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL";
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@Override
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public String getId() {
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return id;
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***REMOVED***
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@Override
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public void createRequest(Operator operator) {
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logger.debug("Create Request");
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ObjectParameter speciesAuthorName = new ObjectParameter();
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speciesAuthorName.setName("SpeciesAuthorName");
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speciesAuthorName.setValue("Gadus morhua (Linnaeus, 1758)");
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EnumParameter taxaAuthorityFile = new EnumParameter();
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taxaAuthorityFile.setName("Taxa_Authority_File");
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taxaAuthorityFile.setValue("FISHBASE");
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EnumParameter parserName = new EnumParameter();
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parserName.setName("Parser_Name");
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parserName.setValue("SIMPLE");
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ObjectParameter activatePreparsingProcessing = new ObjectParameter();
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activatePreparsingProcessing.setName("Activate_Preparsing_Processing");
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activatePreparsingProcessing.setValue("true");
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ObjectParameter useStemmedGenusAndSpecies = new ObjectParameter();
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useStemmedGenusAndSpecies.setName("Use_Stemmed_Genus_and_Species");
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useStemmedGenusAndSpecies.setValue("false");
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EnumParameter accuracyVsSpeed = new EnumParameter();
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accuracyVsSpeed.setName("Accuracy_vs_Speed");
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accuracyVsSpeed.setValue("MAX_ACCURACY");
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EnumParameter matcher1 = new EnumParameter();
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matcher1.setName("Matcher_1");
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matcher1.setValue("GSAy");
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ObjectParameter threshold1 = new ObjectParameter();
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threshold1.setName("Threshold_1");
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threshold1.setValue("0.6");
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ObjectParameter maxResults1 = new ObjectParameter();
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maxResults1.setName("MaxResults_1");
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maxResults1.setValue("10");
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EnumParameter matcher2 = new EnumParameter();
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matcher2.setName("Matcher_2");
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matcher2.setValue("FUZZYMATCH");
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ObjectParameter threshold2 = new ObjectParameter();
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threshold2.setName("Threshold_2");
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threshold2.setValue("0.6");
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ObjectParameter maxResults2 = new ObjectParameter();
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maxResults2.setName("MaxResults_2");
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maxResults2.setValue("10");
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EnumParameter matcher3 = new EnumParameter();
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matcher3.setName("Matcher_3");
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matcher3.setValue("LEVENSHTEIN");
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ObjectParameter threshold3 = new ObjectParameter();
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threshold3.setName("Threshold_3");
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threshold3.setValue("0.4");
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ObjectParameter maxResults3 = new ObjectParameter();
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maxResults3.setName("MaxResults_3");
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maxResults3.setValue("5");
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EnumParameter matcher4 = new EnumParameter();
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matcher4.setName("Matcher_4");
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matcher4.setValue("TRIGRAM");
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ObjectParameter threshold4 = new ObjectParameter();
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threshold4.setName("Threshold_4");
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threshold4.setValue("0.4");
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ObjectParameter maxResults4 = new ObjectParameter();
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maxResults4.setName("MaxResults_4");
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maxResults4.setValue("5");
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EnumParameter matcher5 = new EnumParameter();
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matcher5.setName("Matcher_5");
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matcher5.setValue("NONE");
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ObjectParameter threshold5 = new ObjectParameter();
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threshold5.setName("Threshold_5");
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threshold5.setValue("0.2");
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ObjectParameter maxResults5 = new ObjectParameter();
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maxResults5.setName("MaxResults_5");
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maxResults5.setValue("0");
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List<Parameter> parameters = new ArrayList<>();
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parameters.add(speciesAuthorName);
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parameters.add(taxaAuthorityFile);
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parameters.add(parserName);
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parameters.add(activatePreparsingProcessing);
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parameters.add(useStemmedGenusAndSpecies);
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parameters.add(accuracyVsSpeed);
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parameters.add(matcher1);
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parameters.add(threshold1);
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parameters.add(maxResults1);
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parameters.add(matcher2);
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parameters.add(threshold2);
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parameters.add(maxResults2);
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parameters.add(matcher3);
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parameters.add(threshold3);
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parameters.add(maxResults3);
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parameters.add(matcher4);
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parameters.add(threshold4);
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parameters.add(maxResults4);
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parameters.add(matcher5);
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parameters.add(threshold5);
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parameters.add(maxResults5);
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logger.debug("Parameters set: " + parameters);
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operator.setOperatorParameters(parameters);
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***REMOVED***
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@Override
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public String getResult(OutputData outputData) {
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StringBuilder result = new StringBuilder();
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logger.debug("Output: " + outputData);
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Resource resource = outputData.getResource();
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if (resource.isMap()) {
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MapResource mapResource = (MapResource) resource;
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for (String key : mapResource.getMap().keySet()) {
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logger.debug("Entry: " + key + " = " + mapResource.getMap().get(key));
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result.append("Entry: " + key + " = " + mapResource.getMap().get(key));
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***REMOVED***
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***REMOVED*** else {
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***REMOVED***
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return result.toString();
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***REMOVED***
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@Override
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public boolean isValidResult(OutputData outputData) {
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boolean valid;
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logger.debug("Output: " + outputData);
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Resource resource = outputData.getResource();
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if (resource.isMap()) {
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MapResource mapResource = (MapResource) resource;
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for (String key : mapResource.getMap().keySet()) {
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logger.debug("Entry: " + key + " = " + mapResource.getMap().get(key));
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***REMOVED***
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valid = true;
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***REMOVED*** else {
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valid = false;
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***REMOVED***
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return valid;
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***REMOVED***
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***REMOVED***
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