Updated client library for netcdf files
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/data-miner-manager-cl@167296 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
parent
70006d0a38
commit
f65236e7ba
10
.classpath
10
.classpath
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@ -1,12 +1,12 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<classpath>
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<classpathentry kind="src" output="target/data-miner-manager-cl-1.3.0-SNAPSHOT/WEB-INF/classes" path="src/main/java">
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<classpathentry kind="src" output="target/data-miner-manager-cl-1.4.0-SNAPSHOT/WEB-INF/classes" path="src/main/java">
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<attributes>
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<attribute name="optional" value="true"/>
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<attribute name="maven.pomderived" value="true"/>
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</attributes>
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</classpathentry>
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<classpathentry excluding="**" kind="src" output="target/data-miner-manager-cl-1.3.0-SNAPSHOT/WEB-INF/classes" path="src/main/resources">
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<classpathentry excluding="**" kind="src" output="target/data-miner-manager-cl-1.4.0-SNAPSHOT/WEB-INF/classes" path="src/main/resources">
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<attributes>
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<attribute name="maven.pomderived" value="true"/>
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</attributes>
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@ -28,10 +28,10 @@
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<attribute name="org.eclipse.jst.component.nondependency" value=""/>
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</attributes>
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</classpathentry>
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<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
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<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7">
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<attributes>
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<attribute name="owner.project.facets" value="java"/>
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<attribute name="maven.pomderived" value="true"/>
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</attributes>
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</classpathentry>
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<classpathentry kind="output" path="target/data-miner-manager-cl-1.3.0-SNAPSHOT/WEB-INF/classes"/>
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<classpathentry kind="output" path="target/data-miner-manager-cl-1.4.0-SNAPSHOT/WEB-INF/classes"/>
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</classpath>
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@ -1,8 +1,8 @@
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eclipse.preferences.version=1
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org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
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org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
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org.eclipse.jdt.core.compiler.compliance=1.8
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org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
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org.eclipse.jdt.core.compiler.compliance=1.7
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org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
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org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
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org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
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org.eclipse.jdt.core.compiler.source=1.8
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org.eclipse.jdt.core.compiler.source=1.7
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@ -1,5 +1,5 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<faceted-project>
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<installed facet="jst.utility" version="1.0"/>
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<installed facet="java" version="1.8"/>
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<installed facet="java" version="1.7"/>
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</faceted-project>
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@ -1,4 +1,8 @@
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<ReleaseNotes>
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<Changeset component="org.gcube.data.analysis.data-miner-manager-cl.1-4-0"
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date="2018-04-03">
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<Change>Updated to support netcdf files</Change>
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</Changeset>
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<Changeset component="org.gcube.data.analysis.data-miner-manager-cl.1-3-0"
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date="2017-06-12">
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<Change>Support Java 8 compatibility [ticket #8471]</Change>
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2
pom.xml
2
pom.xml
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@ -11,7 +11,7 @@
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<groupId>org.gcube.data.analysis</groupId>
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<artifactId>data-miner-manager-cl</artifactId>
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<version>1.3.0-SNAPSHOT</version>
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<version>1.4.0-SNAPSHOT</version>
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<name>data-miner-manager-cl</name>
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<description>DataMiner Manager Client Library</description>
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@ -3,12 +3,6 @@
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<inherits name='com.google.gwt.user.User' />
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<inherits name="com.google.gwt.http.HTTP" />
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<!-- <inherits name='com.google.gwt.user.theme.clean.Clean' /> -->
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<inherits name='com.sencha.gxt.ui.GXT' />
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<!-- <inherits name="com.extjs.gxt.ui.GXT" /> -->
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<!-- <inherits name="com.google.gwt.logging.Logging" /> -->
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<inherits name="com.allen_sauer.gwt.log.gwt-log-TRACE" />
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<!--
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<entry-point
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@ -19,12 +13,12 @@
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value="ENABLED" /> <set-property name="log_SystemLogger" value="ENABLED"
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/> -->
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<!--
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<set-property name="log_ConsoleLogger" value="DISABLED" />
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<set-property name="log_DivLogger" value="DISABLED" />
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<set-property name="log_GWTLogger" value="DISABLED" />
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<set-property name="log_SystemLogger" value="DISABLED" />
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-->
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<source path='client' />
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@ -53,6 +53,7 @@ import org.gcube.data.analysis.dataminermanagercl.shared.data.output.MapResource
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import org.gcube.data.analysis.dataminermanagercl.shared.data.output.ObjectResource;
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import org.gcube.data.analysis.dataminermanagercl.shared.data.output.Resource;
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import org.gcube.data.analysis.dataminermanagercl.shared.exception.ServiceException;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.FileParameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.ObjectParameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.Parameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.TabularListParameter;
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@ -410,8 +411,7 @@ public class SClient4WPS extends SClient {
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return processInformations;
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} catch (Throwable e) {
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logger.error(e.getLocalizedMessage());
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e.printStackTrace();
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logger.error(e.getLocalizedMessage(),e);
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throw new ServiceException(e.getLocalizedMessage(), e);
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} finally {
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wpsClient.disconnect(wpsProcessingServlet);
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@ -928,8 +928,7 @@ public class SClient4WPS extends SClient {
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return statusLocation;
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} catch (Throwable e) {
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logger.error(e.getLocalizedMessage());
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e.printStackTrace();
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logger.error(e.getLocalizedMessage(),e);
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throw new ServiceException(e.getLocalizedMessage(), e);
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}
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}
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@ -1041,8 +1040,7 @@ public class SClient4WPS extends SClient {
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}
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} catch (Throwable e) {
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logger.error("MonitorProcess: " + e.getLocalizedMessage());
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e.printStackTrace();
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logger.error("MonitorProcess: " + e.getLocalizedMessage(),e);
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throw new ServiceException(e.getLocalizedMessage(), e);
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} finally {
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wpsClient.disconnect(wpsProcessingServlet);
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@ -1146,9 +1144,24 @@ public class SClient4WPS extends SClient {
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if (responseWPS.getData().startsWith("http:")
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|| responseWPS.getData().startsWith("https:")
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|| responseWPS.getData().startsWith("smp:")) {
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Parameter complexParameter = outputParameters.get(outputID);
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if (complexParameter instanceof FileParameter) {
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FileParameter fileParameter = (FileParameter) complexParameter;
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if (fileParameter.isNetcdf()) {
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resource = new FileResource(key, responseWPS.getDescription(),
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responseWPS.getDescription(), responseWPS.getData(),
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responseWPS.getMimeType());
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responseWPS.getMimeType(), true);
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} else {
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resource = new FileResource(key, responseWPS.getDescription(),
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responseWPS.getDescription(), responseWPS.getData(),
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responseWPS.getMimeType(), false);
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}
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} else {
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resource = new FileResource(key, responseWPS.getDescription(),
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responseWPS.getDescription(), responseWPS.getData(),
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responseWPS.getMimeType(), false);
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}
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outputResource.put(key, resource);
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} else {
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resource = new ObjectResource(key, responseWPS.getDescription(),
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@ -1167,9 +1180,23 @@ public class SClient4WPS extends SClient {
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if (responseWPS.getData().startsWith("http:")
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|| responseWPS.getData().startsWith("https:")
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|| responseWPS.getData().startsWith("smp:")) {
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Parameter complexParameter = outputParameters.get(outputID);
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if (complexParameter instanceof FileParameter) {
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FileParameter fileParameter = (FileParameter) complexParameter;
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if (fileParameter.isNetcdf()) {
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resource = new FileResource(key, responseWPS.getDescription(),
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responseWPS.getDescription(), responseWPS.getData(),
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responseWPS.getMimeType());
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responseWPS.getMimeType(), true);
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} else {
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resource = new FileResource(key, responseWPS.getDescription(),
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responseWPS.getDescription(), responseWPS.getData(),
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responseWPS.getMimeType(), false);
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}
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} else {
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resource = new FileResource(key, responseWPS.getDescription(),
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responseWPS.getDescription(), responseWPS.getData(),
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responseWPS.getMimeType(), false);
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}
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outputResource.put(key, resource);
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} else {
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resource = new ObjectResource(key, responseWPS.getDescription(),
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@ -1206,7 +1233,7 @@ public class SClient4WPS extends SClient {
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return result;
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} catch (Throwable e) {
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e.printStackTrace();
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logger.error(e.getLocalizedMessage(), e);
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throw new ServiceException(e.getLocalizedMessage(), e);
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} finally {
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if (wpsClient != null) {
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@ -1216,6 +1243,7 @@ public class SClient4WPS extends SClient {
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}
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@Override
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public ComputationId resubmitComputation(Map<String, String> computationProperties) throws ServiceException {
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ProcessInformations processInformations;
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if (computationProperties == null || computationProperties.isEmpty()) {
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@ -537,17 +537,20 @@ public class SClient4WPSSession implements Serializable {
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URL url = new URL(urlString);
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HttpURLConnection conn = (HttpURLConnection) url.openConnection();
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conn.setRequestMethod("POST");
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conn.setRequestProperty("Authorization", "Basic " + encoded);
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conn.setRequestProperty("Accept-Encoding", "gzip");
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conn.setRequestProperty("Content-Type", "text/xml");
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conn.setRequestProperty("Content-Type", "text/xml; charset=UTF-8");
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conn.setDoOutput(true);
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obj.save(conn.getOutputStream());
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InputStream input = null;
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String encoding = conn.getContentEncoding();
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if (encoding != null && encoding.equalsIgnoreCase("gzip")) {
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logger.debug("Read encoding GZIP");
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input = new GZIPInputStream(conn.getInputStream());
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} else {
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logger.debug("Read encoding: "+encoding);
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input = conn.getInputStream();
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}
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return input;
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@ -50,16 +50,16 @@ public class WPS2DM {
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* @param title
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* title
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* @param minOcc
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* min occurences
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* min occurrences
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* @param maxOcc
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* max occurences
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* max occurrences
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* @param rangeOccs
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* range occurences
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* range occurrences
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* @param id
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* id
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* @param crs
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* crs
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* @return Parameter
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* @return parameter
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*/
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public static Parameter manageBoundingBoxInformation(String title, int minOcc, int maxOcc, int rangeOccs, String id,
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String crs) {
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@ -83,7 +83,7 @@ public class WPS2DM {
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* @param title
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* title
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* @param minOcc
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* min occurences
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* min occurrences
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* @param maxOcc
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* max occurences
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* @param rangeOccs
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@ -96,7 +96,7 @@ public class WPS2DM {
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* uoms
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* @param type
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* type
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* @return Parameter
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* @return parameter
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*/
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public static Parameter manageLiteral(String title, int minOcc, int maxOcc, int rangeOccs, String defaultValue,
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String id, String uoms, DomainMetadataType type) {
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@ -255,18 +255,18 @@ public class WPS2DM {
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* @param title
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* title
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* @param minOcc
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* min occurences
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* min occurrences
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* @param maxOcc
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* max occurences
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* max occurrences
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* @param rangeOccs
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* range occurences
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* range occurrences
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* @param id
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* id
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* @param defaultType
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* default type
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* @param supportedTypes
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* supported types
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* @return Parameter
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* supported type
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* @return parameter
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*/
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public static Parameter manageComplexData(String maxMegaBytes, String title, int minOcc, int maxOcc, int rangeOccs,
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String id, ComplexDataDescriptionType defaultType, ComplexDataDescriptionType[] supportedTypes) {
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@ -297,7 +297,11 @@ public class WPS2DM {
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supportedMimeTypes);
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} else {
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if (title.contains("[a http link to a file")) {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes);
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if (title.contains("[NETCDF]")) {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, true);
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} else {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, false);
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}
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} else {
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if (title.contains("[a sequence of http links")) {
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Pattern pattern = Pattern.compile(
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@ -317,18 +321,26 @@ public class WPS2DM {
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converted = new TabularListParameter(id, title, separator, mimeType,
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supportedMimeTypes);
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} else {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes);
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if (title.contains("[NETCDF]")) {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, true);
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} else {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, false);
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}
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}
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} else {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes);
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if (title.contains("[NETCDF]")) {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, true);
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} else {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, false);
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}
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}
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}
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}
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} else {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes);
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, false);
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}
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} else {
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes);
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converted = new FileParameter(id, title, mimeType, supportedMimeTypes, false);
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}
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return converted;
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}
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@ -445,7 +457,7 @@ public class WPS2DM {
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* @param maxMegabytes
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* max mega bytes
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* @param UoM
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* uom
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* UoM
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* @param minElements
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* min elements
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* @param maxElements
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|
|
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@ -33,10 +33,9 @@ public class ComputationValueBuilder {
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this.valueParameters = valueParameters;
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}
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/**
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*
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* @return map of computation value
|
||||
* @return map from parameter to computation value
|
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*/
|
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public LinkedHashMap<String, ComputationValue> create() {
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computationsValueParameters = new LinkedHashMap<String, ComputationValue>();
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@ -97,7 +96,7 @@ public class ComputationValueBuilder {
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} catch (Throwable e) {
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logger.error("Retrieve File Name: " + e.getLocalizedMessage());
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e.printStackTrace();
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return new ComputationValueFile(value, null, null);
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return new ComputationValueFile(value, null, null,false);
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}
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}
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|
@ -148,8 +147,12 @@ public class ComputationValueBuilder {
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computationValue = new ComputationValueImage(value, fileName,
|
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mimeType);
|
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} else {
|
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computationValue = new ComputationValueFile(value, fileName,
|
||||
mimeType);
|
||||
if ((mimeType != null && mimeType.compareToIgnoreCase("application/x-netcdf") == 0)
|
||||
|| fileName != null && fileName.endsWith(".nc")) {
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computationValue = new ComputationValueFile(value, fileName, mimeType, true);
|
||||
} else {
|
||||
computationValue = new ComputationValueFile(value, fileName, mimeType, false);
|
||||
}
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||||
}
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return computationValue;
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|
|
|
@ -12,12 +12,7 @@ public class Constants {
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|
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public static final String DEFAULT_USER = "giancarlo.panichi";
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public final static String DEFAULT_SCOPE = "/gcube/devNext/NextNext";
|
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public final static String DEFAULT_TOKEN = "ae1208f0-210d-47c9-9b24-d3f2dfcce05f-98187548";
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//public final static String DEFAULT_SCOPE = "/gcube/preprod/preVRE";
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//public final static String DEFAULT_TOKEN = "04269c7d-dab7-498a-841d-8d38ae2d482b-98187548";
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||||
|
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|
||||
public final static String DEFAULT_TOKEN = "";
|
||||
|
||||
public static final String DATAMINER_SERVICE_CATEGORY = "DataAnalysis";
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public static final String DATA_MINER_SERVICE_NAME = "DataMiner";
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|
|
|
@ -11,15 +11,17 @@ public class ComputationValueFile extends ComputationValue {
|
|||
|
||||
private String fileName;
|
||||
private String mimeType;
|
||||
private boolean netcdf;
|
||||
|
||||
public ComputationValueFile() {
|
||||
super(ComputationValueType.File);
|
||||
}
|
||||
|
||||
public ComputationValueFile(String url, String fileName, String mimeType) {
|
||||
public ComputationValueFile(String url, String fileName, String mimeType, boolean netcdf) {
|
||||
super(ComputationValueType.File, url);
|
||||
this.fileName = fileName;
|
||||
this.mimeType = mimeType;
|
||||
this.netcdf = netcdf;
|
||||
}
|
||||
|
||||
public String getFileName() {
|
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@ -38,12 +40,17 @@ public class ComputationValueFile extends ComputationValue {
|
|||
this.mimeType = mimeType;
|
||||
}
|
||||
|
||||
public boolean isNetcdf() {
|
||||
return netcdf;
|
||||
}
|
||||
|
||||
public void setNetcdf(boolean netcdf) {
|
||||
this.netcdf = netcdf;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "ComputationValueFile [fileName=" + fileName + ", mimeType="
|
||||
+ mimeType + ", type=" + type + ", value=" + value + "]";
|
||||
return "ComputationValueFile [fileName=" + fileName + ", mimeType=" + mimeType + ", netcdf=" + netcdf + "]";
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
|
|
@ -18,6 +18,7 @@ public class FileResource extends Resource {
|
|||
|
||||
private String url;
|
||||
private String mimeType;
|
||||
private boolean netcdf;
|
||||
|
||||
/**
|
||||
*
|
||||
|
@ -39,11 +40,15 @@ public class FileResource extends Resource {
|
|||
* url
|
||||
* @param mimeType
|
||||
* mime type
|
||||
* @param netcdf
|
||||
* netcdf
|
||||
*/
|
||||
public FileResource(String resourceId, String name, String description, String url, String mimeType) {
|
||||
public FileResource(String resourceId, String name, String description, String url, String mimeType,
|
||||
boolean netcdf) {
|
||||
super(resourceId, name, description, ResourceType.FILE);
|
||||
this.url = url;
|
||||
this.mimeType = mimeType;
|
||||
this.netcdf = netcdf;
|
||||
}
|
||||
|
||||
/**
|
||||
|
@ -76,11 +81,33 @@ public class FileResource extends Resource {
|
|||
this.mimeType = mimeType;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "FileResource [url=" + url + ", mimeType=" + mimeType + ", getResourceId()=" + getResourceId()
|
||||
+ ", getName()=" + getName() + ", getDescription()=" + getDescription() + ", getResourceType()="
|
||||
+ getResourceType() + "]";
|
||||
/**
|
||||
*
|
||||
* @return true if is NetCDF file
|
||||
*/
|
||||
public boolean isNetcdf() {
|
||||
return netcdf;
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
* @param netcdf
|
||||
* true if is NetCDF file
|
||||
*/
|
||||
public void setNetcdf(boolean netcdf) {
|
||||
this.netcdf = netcdf;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "FileResource [url=" + url + ", mimeType=" + mimeType + ", netcdf=" + netcdf + ", getResourceId()="
|
||||
+ getResourceId() + ", getName()=" + getName() + ", getDescription()=" + getDescription()
|
||||
+ ", getResourceType()=" + getResourceType() + ", isTabular()=" + isTabular() + ", isObject()="
|
||||
+ isObject() + ", isFile()=" + isFile() + ", isMap()=" + isMap() + ", isImages()=" + isImages()
|
||||
+ ", toString()=" + super.toString() + ", getClass()=" + getClass() + ", hashCode()=" + hashCode()
|
||||
+ "]";
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
|
|
@ -16,6 +16,7 @@ public class FileParameter extends Parameter {
|
|||
private static final long serialVersionUID = -2967577990287112937L;
|
||||
private String defaultMimeType;
|
||||
private ArrayList<String> supportedMimeTypes;
|
||||
private boolean netcdf;
|
||||
|
||||
/**
|
||||
*
|
||||
|
@ -23,6 +24,7 @@ public class FileParameter extends Parameter {
|
|||
public FileParameter() {
|
||||
super();
|
||||
this.typology = ParameterType.FILE;
|
||||
netcdf = false;
|
||||
}
|
||||
|
||||
/**
|
||||
|
@ -34,13 +36,16 @@ public class FileParameter extends Parameter {
|
|||
* @param defaultMimeType
|
||||
* default mime type
|
||||
* @param supportedMimeTypes
|
||||
* supported mime type
|
||||
* supported mime types
|
||||
* @param netcdf
|
||||
* is netcdf file
|
||||
*/
|
||||
public FileParameter(String name, String description, String defaultMimeType,
|
||||
ArrayList<String> supportedMimeTypes) {
|
||||
public FileParameter(String name, String description, String defaultMimeType, ArrayList<String> supportedMimeTypes,
|
||||
boolean netcdf) {
|
||||
super(name, ParameterType.FILE, description);
|
||||
this.defaultMimeType = defaultMimeType;
|
||||
this.supportedMimeTypes = supportedMimeTypes;
|
||||
this.netcdf = netcdf;
|
||||
}
|
||||
|
||||
public String getDefaultMimeType() {
|
||||
|
@ -59,11 +64,19 @@ public class FileParameter extends Parameter {
|
|||
this.supportedMimeTypes = supportedMimeTypes;
|
||||
}
|
||||
|
||||
public boolean isNetcdf() {
|
||||
return netcdf;
|
||||
}
|
||||
|
||||
public void setNetcdf(boolean netcdf) {
|
||||
this.netcdf = netcdf;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "FileParameter [value=" + value + ", defaultMimeType=" + defaultMimeType + ", supportedMimeTypes="
|
||||
+ supportedMimeTypes + ", name=" + name + ", description=" + description + ", typology=" + typology
|
||||
+ "]";
|
||||
return "FileParameter [defaultMimeType=" + defaultMimeType + ", supportedMimeTypes=" + supportedMimeTypes
|
||||
+ ", netcdf=" + netcdf + ", name=" + name + ", description=" + description + ", typology=" + typology
|
||||
+ ", value=" + value + "]";
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -3,12 +3,6 @@
|
|||
<inherits name='com.google.gwt.user.User' />
|
||||
<inherits name="com.google.gwt.http.HTTP" />
|
||||
|
||||
<!-- <inherits name='com.google.gwt.user.theme.clean.Clean' /> -->
|
||||
<inherits name='com.sencha.gxt.ui.GXT' />
|
||||
<!-- <inherits name="com.extjs.gxt.ui.GXT" /> -->
|
||||
|
||||
<!-- <inherits name="com.google.gwt.logging.Logging" /> -->
|
||||
<inherits name="com.allen_sauer.gwt.log.gwt-log-TRACE" />
|
||||
|
||||
<!--
|
||||
<entry-point
|
||||
|
@ -19,11 +13,12 @@
|
|||
value="ENABLED" /> <set-property name="log_SystemLogger" value="ENABLED"
|
||||
/> -->
|
||||
|
||||
|
||||
<!--
|
||||
<set-property name="log_ConsoleLogger" value="DISABLED" />
|
||||
<set-property name="log_DivLogger" value="DISABLED" />
|
||||
<set-property name="log_GWTLogger" value="DISABLED" />
|
||||
<set-property name="log_SystemLogger" value="DISABLED" />
|
||||
-->
|
||||
|
||||
|
||||
|
||||
|
|
Loading…
Reference in New Issue