Added CMSY 2 Test
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/data-miner-manager-cl@148942 82a268e6-3cf1-43bd-a215-b396298e98cf
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package org.gcube.data.analysis.dataminermanagercl.test;
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import java.util.ArrayList;
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import java.util.List;
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import org.gcube.data.analysis.dataminermanagercl.server.DataMinerService;
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import org.gcube.data.analysis.dataminermanagercl.server.dmservice.SClient;
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import org.gcube.data.analysis.dataminermanagercl.server.monitor.DMMonitor;
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import org.gcube.data.analysis.dataminermanagercl.server.monitor.DMMonitorListener;
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import org.gcube.data.analysis.dataminermanagercl.shared.Constants;
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import org.gcube.data.analysis.dataminermanagercl.shared.data.OutputData;
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import org.gcube.data.analysis.dataminermanagercl.shared.data.computations.ComputationId;
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import org.gcube.data.analysis.dataminermanagercl.shared.data.output.MapResource;
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import org.gcube.data.analysis.dataminermanagercl.shared.data.output.Resource;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.EnumParameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.FileParameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.ObjectParameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.parameters.Parameter;
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import org.gcube.data.analysis.dataminermanagercl.shared.process.Operator;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import junit.framework.TestCase;
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/**
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*
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* @author Giancarlo Panichi
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*
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*
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*/
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public class CMSY2Test extends TestCase {
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private static Logger logger = LoggerFactory.getLogger(CMSY2Test.class);
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public void testExecute() {
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if (Constants.TEST_ENABLE) {
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logger.debug("Test CMSY 2");
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try {
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DataMinerService dataMinerService = new DataMinerService();
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SClient sClient = dataMinerService.getClient();
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Operator operator = sClient
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.getOperatorById(OperatorId.CMSY2.toString());
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if (operator == null) {
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logger.error("Operator not found");
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} else {
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logger.debug("Operator Name: " + operator.getName()
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+ " (" + operator.getId() + ")");
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logger.debug("Operator: " + operator);
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List<Parameter> parameters = sClient
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.getInputParameters(operator);
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logger.debug("Parameters: " + parameters);
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for (Parameter parameter : parameters) {
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logger.debug("Parameter:[Name=" + parameter.getName()
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+ ", Typology=" + parameter.getTypology() + "]");
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}
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createRequest(operator);
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logger.debug("Start Computation");
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ComputationId computationId = sClient
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.startComputation(operator);
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logger.debug("Started ComputationId: " + computationId);
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monitoringComputation(computationId, sClient);
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}
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assertTrue("Success", true);
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} catch (Throwable e) {
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logger.error(e.getLocalizedMessage());
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e.printStackTrace();
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assertTrue("Error", false);
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}
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} else {
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assertTrue("Success", true);
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}
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}
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private void monitoringComputation(final ComputationId computationId,
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final SClient sClient) {
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DMMonitorListener listener = new DMMonitorListener() {
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@Override
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public void running(double percentage) {
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logger.debug("Operation Running: " + percentage);
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}
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@Override
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public void failed(String message, Exception exception) {
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logger.error("Operation Failed");
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logger.error(message, exception);
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}
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@Override
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public void complete(double percentage) {
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logger.debug("Operation Completed");
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logger.debug("Perc: " + percentage);
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retrieveOutput(computationId, sClient);
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}
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@Override
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public void cancelled() {
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logger.debug("Operation Cancelled");
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}
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@Override
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public void accepted() {
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logger.debug("Operation Accepted");
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}
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};
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DMMonitor dmMonitor = new DMMonitor(computationId, sClient);
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dmMonitor.add(listener);
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dmMonitor.start();
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}
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private void retrieveOutput(ComputationId computationId, SClient sClient) {
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try {
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OutputData output = sClient
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.getOutputDataByComputationId(computationId);
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logger.debug("Output: " + output);
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Resource resource = output.getResource();
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if (resource.isMap()) {
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MapResource mapResource = (MapResource) resource;
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for (String key : mapResource.getMap().keySet()) {
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logger.debug("Entry: " + key + " = "
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+ mapResource.getMap().get(key));
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}
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}
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} catch (Exception e) {
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logger.error(e.getLocalizedMessage());
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e.printStackTrace();
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}
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}
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/**
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*
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* @param operator
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*/
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private void createRequest(Operator operator) {
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logger.debug("Create Request");
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FileParameter catchFile = new FileParameter();
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catchFile.setName("catch_file");
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catchFile
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.setValue("http://data.d4science.org/R3BDYS91WkRBaVlUQ29LNWFERGs5TTA5U3o3Rmp5R2hHbWJQNStIS0N6Yz0");
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ObjectParameter region = new ObjectParameter();
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region.setName("Region");
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region.setValue("Mediterranean");
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ObjectParameter subRegion = new ObjectParameter();
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subRegion.setName("Subregion");
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subRegion.setValue("Adriatic Sea");
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ObjectParameter stock = new ObjectParameter();
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stock.setName("Stock");
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stock.setValue("Athe_boy_AD");
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ObjectParameter group = new ObjectParameter();
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group.setName("Group");
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group.setValue("Plankton feeders");
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ObjectParameter name = new ObjectParameter();
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name.setName("Name");
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name.setValue("Sand smelt in Adriatic Sea");
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ObjectParameter englishName = new ObjectParameter();
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englishName.setName("EnglishName");
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englishName.setValue("Big scale sand smelt");
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ObjectParameter scientificName = new ObjectParameter();
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scientificName.setName("ScientificName");
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scientificName.setValue("Atherina boyeri");
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ObjectParameter source = new ObjectParameter();
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source.setName("Source");
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source.setValue("-");
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ObjectParameter minOfYear = new ObjectParameter();
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minOfYear.setName("MinOfYear");
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minOfYear.setValue("1970");
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ObjectParameter maxOfYear = new ObjectParameter();
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maxOfYear.setName("MaxOfYear");
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maxOfYear.setValue("2014");
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ObjectParameter startYear = new ObjectParameter();
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startYear.setName("StartYear");
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startYear.setValue("1970");
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ObjectParameter endYear = new ObjectParameter();
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endYear.setName("EndYear");
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endYear.setValue("2014");
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ObjectParameter flim = new ObjectParameter();
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flim.setName("Flim");
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flim.setValue("NA");
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ObjectParameter fpa = new ObjectParameter();
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fpa.setName("Fpa");
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fpa.setValue("NA");
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ObjectParameter blim = new ObjectParameter();
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blim.setName("Blim");
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blim.setValue("NA");
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ObjectParameter bpa = new ObjectParameter();
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bpa.setName("Bpa");
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bpa.setValue("NA");
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ObjectParameter bmsy = new ObjectParameter();
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bmsy.setName("Bmsy");
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bmsy.setValue("NA");
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ObjectParameter fmsy = new ObjectParameter();
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fmsy.setName("FMSY");
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fmsy.setValue("NA");
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ObjectParameter msy = new ObjectParameter();
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msy.setName("MSY");
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msy.setValue("NA");
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ObjectParameter msybtrigger = new ObjectParameter();
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msybtrigger.setName("MSYBtrigger");
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msybtrigger.setValue("NA");
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ObjectParameter b40 = new ObjectParameter();
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b40.setName("B40");
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b40.setValue("NA");
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ObjectParameter m = new ObjectParameter();
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m.setName("M");
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m.setValue("NA");
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ObjectParameter fofl = new ObjectParameter();
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fofl.setName("Fofl");
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fofl.setValue("NA");
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ObjectParameter last_F = new ObjectParameter();
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last_F.setName("last_F");
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last_F.setValue("NA");
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EnumParameter resilience=new EnumParameter();
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resilience.setName("Resilience");
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resilience.setValue("Medium");
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ObjectParameter rLow = new ObjectParameter();
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rLow.setName("r.low");
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rLow.setValue("NA");
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ObjectParameter rHi = new ObjectParameter();
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rHi.setName("r.hi");
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rHi.setValue("NA");
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ObjectParameter stbLow = new ObjectParameter();
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stbLow.setName("stb.low");
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stbLow.setValue("0.2");
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ObjectParameter stbHi = new ObjectParameter();
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stbHi.setName("stb.hi");
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stbHi.setValue("0.6");
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ObjectParameter intYr = new ObjectParameter();
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intYr.setName("int.yr");
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intYr.setValue("NA");
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ObjectParameter intbLow = new ObjectParameter();
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intbLow.setName("intb.low");
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intbLow.setValue("NA");
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ObjectParameter intbHi = new ObjectParameter();
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intbHi.setName("intb.hi");
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intbHi.setValue("NA");
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ObjectParameter endbLow = new ObjectParameter();
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endbLow.setName("endb.low");
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endbLow.setValue("0.01");
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ObjectParameter endbHi = new ObjectParameter();
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endbHi.setName("endb.hi");
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endbHi.setValue("0.4");
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ObjectParameter qStart = new ObjectParameter();
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qStart.setName("q.start");
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qStart.setValue("NA");
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ObjectParameter qEnd = new ObjectParameter();
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qEnd.setName("q.end");
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qEnd.setValue("NA");
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EnumParameter btype=new EnumParameter();
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btype.setName("btype");
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btype.setValue("None");
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ObjectParameter forceCmsy = new ObjectParameter();
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forceCmsy.setName("force.cmsy");
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forceCmsy.setValue("false");
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ObjectParameter comment = new ObjectParameter();
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comment.setName("Comment");
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comment.setValue("landings");
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List<Parameter> parameters = new ArrayList<>();
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parameters.add(catchFile);
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parameters.add(region);
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parameters.add(subRegion);
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parameters.add(stock);
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parameters.add(group);
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parameters.add(name);
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parameters.add(englishName);
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parameters.add(scientificName);
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parameters.add(source);
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parameters.add(minOfYear);
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parameters.add(maxOfYear);
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parameters.add(startYear);
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parameters.add(endYear);
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parameters.add(flim);
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parameters.add(fpa);
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parameters.add(blim);
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parameters.add(bpa);
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parameters.add(bmsy);
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parameters.add(fmsy);
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parameters.add(msy);
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parameters.add(msybtrigger);
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parameters.add(b40);
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parameters.add(m);
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parameters.add(fofl);
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parameters.add(last_F);
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parameters.add(resilience);
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parameters.add(rLow);
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parameters.add(rHi);
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parameters.add(stbLow);
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parameters.add(stbHi);
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parameters.add(intYr);
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parameters.add(intbLow);
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parameters.add(intbHi);
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parameters.add(endbLow);
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parameters.add(endbHi);
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parameters.add(qStart);
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parameters.add(qEnd);
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parameters.add(btype);
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parameters.add(forceCmsy);
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parameters.add(comment);
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logger.debug("Parameters set: " + parameters);
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operator.setOperatorParameters(parameters);
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}
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}
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@ -7,15 +7,15 @@ package org.gcube.data.analysis.dataminermanagercl.test;
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*
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*/
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public enum OperatorId {
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DBSCAN(
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"org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN"), CSQUARE_COLUMN_CREATOR(
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"org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR"), BIONYM_LOCAL(
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"org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL"), LISTDBINFO(
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"org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBINFO"), LISTDBNAMES(
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"org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBNAMES"), LISTDBSCHEMA(
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"org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBSCHEMA"), LISTTABLES(
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"org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTTABLES");
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;
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DBSCAN("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN"),
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CSQUARE_COLUMN_CREATOR("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR"),
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BIONYM_LOCAL("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL"),
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LISTDBINFO("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBINFO"),
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LISTDBNAMES("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBNAMES"),
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LISTDBSCHEMA("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBSCHEMA"),
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LISTTABLES("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTTABLES"),
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CMSY2("org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CMSY_2");
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/**
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* @param text
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*/
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