diff --git a/.classpath b/.classpath deleted file mode 100644 index 228d02c..0000000 --- a/.classpath +++ /dev/null @@ -1,43 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..4110018 --- /dev/null +++ b/.gitignore @@ -0,0 +1,3 @@ +/target/ +/.classpath +/bin/ diff --git a/.settings/.gitignore b/.settings/.gitignore new file mode 100644 index 0000000..1de83a6 --- /dev/null +++ b/.settings/.gitignore @@ -0,0 +1,3 @@ +/org.eclipse.core.resources.prefs +/org.eclipse.jdt.core.prefs +/org.eclipse.m2e.core.prefs diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..91b94fb --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,118 @@ +This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). + +# Changelog for Common Smartgears + + +## [v3.0.0] [r5.0.0] - + +- Switched container JSON management to gcube-jackson [#19283] + + +## [v.2.2.0] [r4.19.0] - 2020-01-23 + +- Multiple token are generated in the same call in place of one per call + + +## [v.2.1.9] [r4.15.0] - 2019-11-08 + +- Project adapted to be build with Jenkins + + +## [v.2.1.8] [r4.14.0] - 2019-05-27 + +- Support oauth2 protocol accepting token in the auhtorization header field + + +## [v.2.1.7] [r4.13.1] - 2019-02-26 + +- Added Proxy Address to Application Configuration +- Added protocol to Container Configuration (http by default) +- Changed the logs in accounting handler to log error or success and eventually error code + + +## [v.2.1.5] [r4.6.1] - 2017-09-19 + +- Added ThreadLocal InnerMethodName to set method name from application + + +## [v.2.1.4] [r4.6.0] - 2017-07-25 + +- Validation handler for application split in 2 different handlers: - ContextRetriever that set Token and Scope - RequestValidation that does all the required checks + + +## [v.2.1.3] [r4.5.0] - 2017-06-06 + +- Added gcube bom dependency +- Search for handlers in the root classpath + + +## [v.2.1.2] [r4.3.0] - 2017-05-02 + +- Modified the Authorization filter to accept also children scope when authorizeChildrenContext is enabled on ContianerConfiguration +- Shutdown of Accounting thread added + + +## [v.2.1.1] [r4.3.0] - 2017-03-16 + +- Minor issue on filter exclusion fixed + + +## [v.2.0.1] [r4.2.0] - 2016-12-15 + +- Proxy configuration added +- Solved a bug in events registration for ProfileManager +- Added a scheduler for period update of GCoreEnpoints +- Exclude modified to support exclude for sub-group of handlers + + +## [v.2.0.0] [r4.1.0] - 2016-11-07 + +- Integration with Authorization 2.0 + + +## [v.1.2.7] [r3.11.0] - 2016-05-18 + +- Removed commons-io dependency [#2355] + +## [v.1.2.6] [r3.10.1] - 2016-04-08 + +- Added missing class for service loader of org.gcube.smartgears.handlers.container.ContainerHandler [#2474] +- Added flush of accounting data [#1353] + + +## [v.1.2.5] [r3.10.0] - 2016-02-08 + +- Enhanced accounting version + + +## [v.1.2.4] [r3.9.0] - 2015-12-09 + +- Transparent accounting added on service calls + + +## [v.1.2.3] - 2015-07-27 + +- Authorization token control added +- Added support to HTTP Basic authorization + + +## [v.1.2.2] - 2015-04-27 + +- Fixed available space information on ghn profile + + +## [v.1.2.1] - 2014-02-13 + +- Scopes can be removed from container +- Node profile set to static +- Internal adjustments for move to Java 7 +- Wildcard allowed in exclude directives +- Domain corrected derived in gHN profile +- Cleaner shutdown +- Further improvement in shutdown handling + + +## [v.1.0.0] - 2013-10-24 + +- First Release + diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..3af0507 --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,312 @@ +# European Union Public Licence V. 1.1 + + +EUPL © the European Community 2007 + + +This European Union Public Licence (the “EUPL”) applies to the Work or Software +(as defined below) which is provided under the terms of this Licence. 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Such provision will be construed and/or reformed so as necessary to make +it valid and enforceable. + +The European Commission may publish other linguistic versions and/or new +versions of this Licence, so far this is required and reasonable, without +reducing the scope of the rights granted by the Licence. New versions of the +Licence will be published with a unique version number. + +All linguistic versions of this Licence, approved by the European Commission, +have identical value. Parties can take advantage of the linguistic version of +their choice. + + + +## 14. Jurisdiction + +Any litigation resulting from the interpretation of this License, arising +between the European Commission, as a Licensor, and any Licensee, will be +subject to the jurisdiction of the Court of Justice of the European Communities, +as laid down in article 238 of the Treaty establishing the European Community. + +Any litigation arising between Parties, other than the European Commission, and +resulting from the interpretation of this License, will be subject to the +exclusive jurisdiction of the competent court where the Licensor resides or +conducts its primary business. + + + +## 15. Applicable Law + +This Licence shall be governed by the law of the European Union country where +the Licensor resides or has his registered office. + +This licence shall be governed by the Belgian law if: + +- a litigation arises between the European Commission, as a Licensor, and any +- Licensee; the Licensor, other than the European Commission, has no residence +- or registered office inside a European Union country. + + + +## Appendix + + + +“Compatible Licences” according to article 5 EUPL are: + + +- GNU General Public License (GNU GPL) v. 2 + +- Open Software License (OSL) v. 2.1, v. 3.0 + +- Common Public License v. 1.0 + +- Eclipse Public License v. 1.0 + +- Cecill v. 2.0 + diff --git a/README.md b/README.md new file mode 100644 index 0000000..30250cf --- /dev/null +++ b/README.md @@ -0,0 +1,79 @@ +# Common Smartgears + +A core gCube library which empower a servlet container (e.g. tomcat) with a set of functionality such as: + +- node and application infrastructure registration +- authorization +- accounting + + +## Built With + +* [OpenJDK](https://openjdk.java.net/) - The JDK used +* [Maven](https://maven.apache.org/) - Dependency Management + +## Documentation + +[SmartGears](https://wiki.gcube-system.org/gcube/SmartGears) + +## Change log + +See [Releases](https://code-repo.d4science.org/gCubeSystem/common-smartgears/releases). + +## Authors + +* **Luca Frosini** ([ORCID](https://orcid.org/0000-0003-3183-2291)) - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience) +* **Lucio Lelii** - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience) +* **Fabio Simeoni** - FAO of the UN, Italy + + +## How to Cite this Software + +Tell people how to cite this software. +* Cite an associated paper? +* Use a specific BibTeX entry for the software? + + + @Manual{, + title = {Common Smartgears}, + author = {{Frosini, Luca}, {Lelii, Lucio}, {Simeoni, Fabio}}, + organization = {{ISTI - CNR}, {FAO}}, + address = {{Pisa, Italy}, {Roma, Italy}}, + year = 2019, + url = {http://www.gcube-system.org/} + } + +## License + +This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details. + + +## About the gCube Framework +This software is part of the [gCubeFramework](https://www.gcube-system.org/ "gCubeFramework"): an +open-source software toolkit used for building and operating Hybrid Data +Infrastructures enabling the dynamic deployment of Virtual Research Environments +by favouring the realisation of reuse oriented policies. + +The projects leading to this software have received funding from a series of European Union programmes including: + +- the Sixth Framework Programme for Research and Technological Development + - DILIGENT (grant no. 004260). +- the Seventh Framework Programme for research, technological development and demonstration + - D4Science (grant no. 212488); + - D4Science-II (grant no.239019); + - ENVRI (grant no. 283465); + - iMarine(grant no. 283644); + - EUBrazilOpenBio (grant no. 288754). +- the H2020 research and innovation programme + - SoBigData (grant no. 654024); + - PARTHENOS (grant no. 654119); + - EGIEngage (grant no. 654142); + - ENVRIplus (grant no. 654182); + - BlueBRIDGE (grant no. 675680); + - PerformFish (grant no. 727610); + - AGINFRAplus (grant no. 731001); + - DESIRA (grant no. 818194); + - ARIADNEplus (grant no. 823914); + - RISIS2 (grant no. 824091); + + diff --git a/distro/LICENSE b/distro/LICENSE deleted file mode 100644 index cdf50bd..0000000 --- a/distro/LICENSE +++ /dev/null @@ -1,4 +0,0 @@ -gCube System - License ------------------------------------------------------------- - -${gcube.license} \ No newline at end of file diff --git a/distro/README b/distro/README deleted file mode 100644 index 5b353ed..0000000 --- a/distro/README +++ /dev/null @@ -1,70 +0,0 @@ -The gCube System - ${name} --------------------------------------------------- - -${description} - - -${gcube.description} - -${gcube.funding} - - -Version --------------------------------------------------- - -${version} (${buildDate}) - -Please see the file named "changelog.xml" in this directory for the release notes. - - -Authors --------------------------------------------------- - -* Fabio Simeoni (fabio.simeoni@fao.org), FAO of the UN, Italy -* Luca Frosini (luca.frosini@isti.cnr.it), CNR, Italy -* Lucio Lelii (lucio.lelii@isti.cnr.it), CNT, Italy - - -Maintainers ------------ - -* Luca Frosini (luca.frosini@isti.cnr.it), CNR, Italy -* Lucio Lelii (lucio.lelii@isti.cnr.it), CNT, Italy - - -Download information --------------------------------------------------- - -Source code is available from SVN: - ${scm.url} - -Binaries can be downloaded from the gCube website: - ${gcube.website} - - -Installation --------------------------------------------------- - -Installation documentation is available on-line in the gCube Wiki: - ${gcube.wikiRoot}/Smartgears - - -Documentation --------------------------------------------------- - -Documentation is available on-line in the gCube Wiki: - ${gcube.wikiRoot}/Smartgears - - -Support --------------------------------------------------- - -Bugs and support requests can be reported in the gCube issue tracking tool: - ${gcube.issueTracking} - - -Licensing --------------------------------------------------- - -This software is licensed under the terms you may find in the file named "LICENSE" in this directory. - diff --git a/distro/changelog.xml b/distro/changelog.xml deleted file mode 100644 index 5bae3dd..0000000 --- a/distro/changelog.xml +++ /dev/null @@ -1,68 +0,0 @@ - - - Support oauth2 protocol accepting token in the auhtorization header field - - - Added Proxy Address to Application Configuration - Added protocol to Container Configuration (http by default) - Changed the logs in accounting handler to log error or success and eventually error code - - - Added ThreadLocal InnerMethodName to set method name from application - - - Validation handler for application split in 2 different handlers: - - ContextRetriever that set Token and Scope - - RequestValidation that does all the required checks - - - - Added gcube bom dependency - Search for handlers in the root classpath - - - Modified the Authorization filter to accept also children - scope when authorizeChildrenContext is enabled on ContianerConfiguration - Shutdown of Accounting thread added - - - Minor issue on filter exclusion fixed - - - proxy configuration added - solved a bug in events registration for ProfileManager - added a scheduler for period update of GCoreEnpoints - Exclude modified to support exclude for sub-group of handlers - - - integration with Authorization 2.0 - - - Added flush of accounting data - - - Changed accounting version - - - Transparent accounting added on service calls - - - Authorization token control added - Added support to HTTP Basic authorization - - - Fixed available space information on ghn profile - - - scopes can be removed from container - node profile set to static - internal adjustments for move to Java 7 - wildcard allowed in exclude directives - domain corrected derived in gHN profile - cleaner shutdown - further improvement in shutdown handling - - - First Release - - \ No newline at end of file diff --git a/distro/descriptor.xml b/distro/descriptor.xml deleted file mode 100644 index ba2c192..0000000 --- a/distro/descriptor.xml +++ /dev/null @@ -1,31 +0,0 @@ - - servicearchive - - tar.gz - - / - - - ${distroDirectory} - ${file.separator} - true - - README - LICENSE - changelog.xml - profile.xml - - 755 - true - - - - - target${file.separator}${build.finalName}.${project.packaging} - ${file.separator}${artifactId} - - - \ No newline at end of file diff --git a/pom.xml b/pom.xml index 589b043..b3896e1 100644 --- a/pom.xml +++ b/pom.xml @@ -11,7 +11,7 @@ org.gcube.core common-smartgears - 2.3.0-SNAPSHOT + 3.0.0 SmartGears @@ -19,7 +19,7 @@ org.gcube.distribution gcube-bom - LATEST + 2.0.0 pom import @@ -34,9 +34,9 @@ - scm:git:https://code-repo.d4science.org/gCubeSystem/commmon-smartgears.git - scm:git:https://code-repo.d4science.org/gCubeSystem/commmon-smartgears.git - https://code-repo.d4science.org/gCubeSystem/commmon-smartgears + scm:git:https://code-repo.d4science.org/gCubeSystem/common-smartgears.git + scm:git:https://code-repo.d4science.org/gCubeSystem/common-smartgears.git + https://code-repo.d4science.org/gCubeSystem/common-smartgears @@ -186,29 +186,10 @@ - - org.apache.maven.plugins - maven-assembly-plugin - - - ${distroDirectory}/descriptor.xml - - - - - servicearchive - install - - single - - - - - maven-jar-plugin - 2.3.2 + default-jar @@ -229,7 +210,7 @@ org.apache.maven.plugins maven-war-plugin - 2.4 + false probe @@ -252,7 +233,7 @@ org.apache.maven.plugins maven-surefire-plugin - 2.15 + @@ -291,4 +272,4 @@ - \ No newline at end of file + diff --git a/src/main/java/org/gcube/smartgears/handlers/application/lifecycle/ProfileBuilder.java b/src/main/java/org/gcube/smartgears/handlers/application/lifecycle/ProfileBuilder.java index 522b9ba..da9c635 100644 --- a/src/main/java/org/gcube/smartgears/handlers/application/lifecycle/ProfileBuilder.java +++ b/src/main/java/org/gcube/smartgears/handlers/application/lifecycle/ProfileBuilder.java @@ -12,14 +12,12 @@ import org.gcube.common.resources.gcore.HostingNode; import org.gcube.smartgears.configuration.application.ApplicationConfiguration; import org.gcube.smartgears.configuration.container.ContainerConfiguration; import org.gcube.smartgears.context.application.ApplicationContext; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; public class ProfileBuilder { private static List servletExcludes = Arrays.asList("default","jsp"); - private static final Logger log = LoggerFactory.getLogger(ProfileBuilder.class); + // private static final Logger log = LoggerFactory.getLogger(ProfileBuilder.class); private ApplicationContext context; diff --git a/src/main/java/org/gcube/smartgears/managers/ApplicationManager.java b/src/main/java/org/gcube/smartgears/managers/ApplicationManager.java index c4b4b74..38fbe42 100644 --- a/src/main/java/org/gcube/smartgears/managers/ApplicationManager.java +++ b/src/main/java/org/gcube/smartgears/managers/ApplicationManager.java @@ -13,10 +13,8 @@ import java.io.File; import java.io.FileOutputStream; import java.io.ObjectOutputStream; import java.util.Collection; -import java.util.HashSet; import java.util.List; import java.util.Map.Entry; -import java.util.Set; import java.util.stream.Collectors; import javax.servlet.FilterRegistration; diff --git a/src/main/java/org/gcube/smartgears/managers/ContainerManager.java b/src/main/java/org/gcube/smartgears/managers/ContainerManager.java index 7e99092..9d3d327 100644 --- a/src/main/java/org/gcube/smartgears/managers/ContainerManager.java +++ b/src/main/java/org/gcube/smartgears/managers/ContainerManager.java @@ -10,7 +10,6 @@ import static org.gcube.smartgears.provider.ProviderFactory.provider; import java.io.File; import java.io.FileOutputStream; import java.io.ObjectOutputStream; -import java.util.ArrayList; import java.util.HashSet; import java.util.List; import java.util.Set; diff --git a/src/main/resources/META-INF/.gitignore b/src/main/resources/META-INF/.gitignore new file mode 100644 index 0000000..b5c4b2d --- /dev/null +++ b/src/main/resources/META-INF/.gitignore @@ -0,0 +1 @@ +/smartgears-config.xml