Merge branch 'master' of code-repo.d4science.org:gCubeSystem/common-smartgears

master
Lucio Lelii 3 years ago
commit fd766ce080

@ -1,43 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" output="target/classes" path="src/main/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
<attribute name="test" value="true"/>
</attributes>
</classpathentry>
<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
<attribute name="test" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" path="target/generated-sources">
<attributes>
<attribute name="optional" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="output" path="target/classes"/>
</classpath>

3
.gitignore vendored

@ -0,0 +1,3 @@
/target/
/.classpath
/bin/

@ -0,0 +1,3 @@
/org.eclipse.core.resources.prefs
/org.eclipse.jdt.core.prefs
/org.eclipse.m2e.core.prefs

@ -0,0 +1,118 @@
This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
# Changelog for Common Smartgears
## [v3.0.0] [r5.0.0] -
- Switched container JSON management to gcube-jackson [#19283]
## [v.2.2.0] [r4.19.0] - 2020-01-23
- Multiple token are generated in the same call in place of one per call
## [v.2.1.9] [r4.15.0] - 2019-11-08
- Project adapted to be build with Jenkins
## [v.2.1.8] [r4.14.0] - 2019-05-27
- Support oauth2 protocol accepting token in the auhtorization header field
## [v.2.1.7] [r4.13.1] - 2019-02-26
- Added Proxy Address to Application Configuration
- Added protocol to Container Configuration (http by default)
- Changed the logs in accounting handler to log error or success and eventually error code
## [v.2.1.5] [r4.6.1] - 2017-09-19
- Added ThreadLocal InnerMethodName to set method name from application
## [v.2.1.4] [r4.6.0] - 2017-07-25
- Validation handler for application split in 2 different handlers: - ContextRetriever that set Token and Scope - RequestValidation that does all the required checks
## [v.2.1.3] [r4.5.0] - 2017-06-06
- Added gcube bom dependency
- Search for handlers in the root classpath
## [v.2.1.2] [r4.3.0] - 2017-05-02
- Modified the Authorization filter to accept also children scope when authorizeChildrenContext is enabled on ContianerConfiguration
- Shutdown of Accounting thread added
## [v.2.1.1] [r4.3.0] - 2017-03-16
- Minor issue on filter exclusion fixed
## [v.2.0.1] [r4.2.0] - 2016-12-15
- Proxy configuration added
- Solved a bug in events registration for ProfileManager
- Added a scheduler for period update of GCoreEnpoints
- Exclude modified to support exclude for sub-group of handlers
## [v.2.0.0] [r4.1.0] - 2016-11-07
- Integration with Authorization 2.0
## [v.1.2.7] [r3.11.0] - 2016-05-18
- Removed commons-io dependency [#2355]
## [v.1.2.6] [r3.10.1] - 2016-04-08
- Added missing class for service loader of org.gcube.smartgears.handlers.container.ContainerHandler [#2474]
- Added flush of accounting data [#1353]
## [v.1.2.5] [r3.10.0] - 2016-02-08
- Enhanced accounting version
## [v.1.2.4] [r3.9.0] - 2015-12-09
- Transparent accounting added on service calls
## [v.1.2.3] - 2015-07-27
- Authorization token control added
- Added support to HTTP Basic authorization
## [v.1.2.2] - 2015-04-27
- Fixed available space information on ghn profile
## [v.1.2.1] - 2014-02-13
- Scopes can be removed from container
- Node profile set to static
- Internal adjustments for move to Java 7
- Wildcard allowed in exclude directives
- Domain corrected derived in gHN profile
- Cleaner shutdown
- Further improvement in shutdown handling
## [v.1.0.0] - 2013-10-24
- First Release

@ -0,0 +1,312 @@
# European Union Public Licence V. 1.1
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## Appendix
“Compatible Licences” according to article 5 EUPL are:
- GNU General Public License (GNU GPL) v. 2
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- Common Public License v. 1.0
- Eclipse Public License v. 1.0
- Cecill v. 2.0

@ -0,0 +1,79 @@
# Common Smartgears
A core gCube library which empower a servlet container (e.g. tomcat) with a set of functionality such as:
- node and application infrastructure registration
- authorization
- accounting
## Built With
* [OpenJDK](https://openjdk.java.net/) - The JDK used
* [Maven](https://maven.apache.org/) - Dependency Management
## Documentation
[SmartGears](https://wiki.gcube-system.org/gcube/SmartGears)
## Change log
See [Releases](https://code-repo.d4science.org/gCubeSystem/common-smartgears/releases).
## Authors
* **Luca Frosini** ([ORCID](https://orcid.org/0000-0003-3183-2291)) - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience)
* **Lucio Lelii** - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience)
* **Fabio Simeoni** - FAO of the UN, Italy
## How to Cite this Software
Tell people how to cite this software.
* Cite an associated paper?
* Use a specific BibTeX entry for the software?
@Manual{,
title = {Common Smartgears},
author = {{Frosini, Luca}, {Lelii, Lucio}, {Simeoni, Fabio}},
organization = {{ISTI - CNR}, {FAO}},
address = {{Pisa, Italy}, {Roma, Italy}},
year = 2019,
url = {http://www.gcube-system.org/}
}
## License
This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details.
## About the gCube Framework
This software is part of the [gCubeFramework](https://www.gcube-system.org/ "gCubeFramework"): an
open-source software toolkit used for building and operating Hybrid Data
Infrastructures enabling the dynamic deployment of Virtual Research Environments
by favouring the realisation of reuse oriented policies.
The projects leading to this software have received funding from a series of European Union programmes including:
- the Sixth Framework Programme for Research and Technological Development
- DILIGENT (grant no. 004260).
- the Seventh Framework Programme for research, technological development and demonstration
- D4Science (grant no. 212488);
- D4Science-II (grant no.239019);
- ENVRI (grant no. 283465);
- iMarine(grant no. 283644);
- EUBrazilOpenBio (grant no. 288754).
- the H2020 research and innovation programme
- SoBigData (grant no. 654024);
- PARTHENOS (grant no. 654119);
- EGIEngage (grant no. 654142);
- ENVRIplus (grant no. 654182);
- BlueBRIDGE (grant no. 675680);
- PerformFish (grant no. 727610);
- AGINFRAplus (grant no. 731001);
- DESIRA (grant no. 818194);
- ARIADNEplus (grant no. 823914);
- RISIS2 (grant no. 824091);

@ -1,4 +0,0 @@
gCube System - License
------------------------------------------------------------
${gcube.license}

@ -1,70 +0,0 @@
The gCube System - ${name}
--------------------------------------------------
${description}
${gcube.description}
${gcube.funding}
Version
--------------------------------------------------
${version} (${buildDate})
Please see the file named "changelog.xml" in this directory for the release notes.
Authors
--------------------------------------------------
* Fabio Simeoni (fabio.simeoni@fao.org), FAO of the UN, Italy
* Luca Frosini (luca.frosini@isti.cnr.it), CNR, Italy
* Lucio Lelii (lucio.lelii@isti.cnr.it), CNT, Italy
Maintainers
-----------
* Luca Frosini (luca.frosini@isti.cnr.it), CNR, Italy
* Lucio Lelii (lucio.lelii@isti.cnr.it), CNT, Italy
Download information
--------------------------------------------------
Source code is available from SVN:
${scm.url}
Binaries can be downloaded from the gCube website:
${gcube.website}
Installation
--------------------------------------------------
Installation documentation is available on-line in the gCube Wiki:
${gcube.wikiRoot}/Smartgears
Documentation
--------------------------------------------------
Documentation is available on-line in the gCube Wiki:
${gcube.wikiRoot}/Smartgears
Support
--------------------------------------------------
Bugs and support requests can be reported in the gCube issue tracking tool:
${gcube.issueTracking}
Licensing
--------------------------------------------------
This software is licensed under the terms you may find in the file named "LICENSE" in this directory.

@ -1,68 +0,0 @@
<ReleaseNotes>
<Changeset component="common-smartgears-2.1.9" date="2019-03-21">
<Change>Support oauth2 protocol accepting token in the auhtorization header field</Change>
</Changeset>
<Changeset component="common-smartgears-2.1.7" date="2017-01-16">
<Change>Added Proxy Address to Application Configuration</Change>
<Change>Added protocol to Container Configuration (http by default)</Change>
<Change>Changed the logs in accounting handler to log error or success and eventually error code</Change>
</Changeset>
<Changeset component="common-smartgears-2.1.5" date="2017-07-18">
<Change>Added ThreadLocal InnerMethodName to set method name from application</Change>
</Changeset>
<Changeset component="common-smartgears-2.1.4" date="2017-05-30">
<Change>Validation handler for application split in 2 different handlers:
- ContextRetriever that set Token and Scope
- RequestValidation that does all the required checks
</Change>
</Changeset>
<Changeset component="common-smartgears-2.1.3" date="2017-05-12">
<Change>Added gcube bom dependency</Change>
<Change>Search for handlers in the root classpath</Change>
</Changeset>
<Changeset component="common-smartgears-2.1.2" date="2017-03-22">
<Change>Modified the Authorization filter to accept also children
scope when authorizeChildrenContext is enabled on ContianerConfiguration</Change>
<Change>Shutdown of Accounting thread added</Change>
</Changeset>
<Changeset component="common-smartgears-2.1.1" date="2017-01-25">
<Change>Minor issue on filter exclusion fixed</Change>
</Changeset>
<Changeset component="common-smartgears-2.1.0" date="2016-10-24">
<Change>proxy configuration added</Change>
<Change>solved a bug in events registration for ProfileManager</Change>
<Change>added a scheduler for period update of GCoreEnpoints</Change>
<Change>Exclude modified to support exclude for sub-group of handlers</Change>
</Changeset>
<Changeset component="common-smartgears-2.0.0" date="2016-03-10">
<Change>integration with Authorization 2.0</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.6" date="2015-12-22">
<Change>Added flush of accounting data</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.5" date="2015-12-22">
<Change>Changed accounting version</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.4" date="2015-10-06">
<Change>Transparent accounting added on service calls</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.3" date="2015-07-27">
<Change>Authorization token control added</Change>
<Change>Added support to HTTP Basic authorization</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.2" date="2015-04-27">
<Change>Fixed available space information on ghn profile</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.1" date="2014-02-13">
<Change>scopes can be removed from container</Change>
<Change>node profile set to static</Change>
<Change>internal adjustments for move to Java 7</Change>
<Change>wildcard allowed in exclude directives</Change>
<Change>domain corrected derived in gHN profile</Change>
<Change>cleaner shutdown</Change>
<Change>further improvement in shutdown handling</Change>
</Changeset>
<Changeset component="common-smartgears-1.0.0" date="2013-10-24">
<Change>First Release</Change>
</Changeset>
</ReleaseNotes>

@ -1,31 +0,0 @@
<assembly
xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0 http://maven.apache.org/xsd/assembly-1.1.0.xsd">
<id>servicearchive</id>
<formats>
<format>tar.gz</format>
</formats>
<baseDirectory>/</baseDirectory>
<fileSets>
<fileSet>
<directory>${distroDirectory}</directory>
<outputDirectory>${file.separator}</outputDirectory>
<useDefaultExcludes>true</useDefaultExcludes>
<includes>
<include>README</include>
<include>LICENSE</include>
<include>changelog.xml</include>
<include>profile.xml</include>
</includes>
<fileMode>755</fileMode>
<filtered>true</filtered>
</fileSet>
</fileSets>
<files>
<file>
<source>target${file.separator}${build.finalName}.${project.packaging}</source>
<outputDirectory>${file.separator}${artifactId}</outputDirectory>
</file>
</files>
</assembly>

@ -11,7 +11,7 @@
<groupId>org.gcube.core</groupId>
<artifactId>common-smartgears</artifactId>
<version>2.3.0-SNAPSHOT</version>
<version>3.0.0</version>
<name>SmartGears</name>
<dependencyManagement>
@ -19,7 +19,7 @@
<dependency>
<groupId>org.gcube.distribution</groupId>
<artifactId>gcube-bom</artifactId>
<version>LATEST</version>
<version>2.0.0</version>
<type>pom</type>
<scope>import</scope>
</dependency>
@ -34,9 +34,9 @@
</properties>
<scm>
<connection>scm:git:https://code-repo.d4science.org/gCubeSystem/commmon-smartgears.git</connection>
<developerConnection>scm:git:https://code-repo.d4science.org/gCubeSystem/commmon-smartgears.git</developerConnection>
<url>https://code-repo.d4science.org/gCubeSystem/commmon-smartgears</url>
<connection>scm:git:https://code-repo.d4science.org/gCubeSystem/common-smartgears.git</connection>
<developerConnection>scm:git:https://code-repo.d4science.org/gCubeSystem/common-smartgears.git</developerConnection>
<url>https://code-repo.d4science.org/gCubeSystem/common-smartgears</url>
</scm>
<dependencies>
@ -186,29 +186,10 @@
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<descriptors>
<descriptor>${distroDirectory}/descriptor.xml</descriptor>
</descriptors>
</configuration>
<executions>
<execution>
<id>servicearchive</id>
<phase>install</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- excludes probe package from jar -->
<plugin>
<artifactId>maven-jar-plugin</artifactId>
<version>2.3.2</version>
<!-- version>2.3.2</version -->
<executions>
<execution>
<id>default-jar</id>
@ -229,7 +210,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.4</version>
<!-- version>2.4</version -->
<configuration>
<primaryArtifact>false</primaryArtifact>
<classifier>probe</classifier>
@ -252,7 +233,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.15</version>
<!-- version>2.15</version -->
<configuration>
<!-- tomcat annotation discovery won't work with the default manifest-only
jar -->
@ -291,4 +272,4 @@
</plugins>
</build>
</project>
</project>

@ -12,14 +12,12 @@ import org.gcube.common.resources.gcore.HostingNode;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
public class ProfileBuilder {
private static List<String> servletExcludes = Arrays.asList("default","jsp");
private static final Logger log = LoggerFactory.getLogger(ProfileBuilder.class);
// private static final Logger log = LoggerFactory.getLogger(ProfileBuilder.class);
private ApplicationContext context;

@ -13,10 +13,8 @@ import java.io.File;
import java.io.FileOutputStream;
import java.io.ObjectOutputStream;
import java.util.Collection;
import java.util.HashSet;
import java.util.List;
import java.util.Map.Entry;
import java.util.Set;
import java.util.stream.Collectors;
import javax.servlet.FilterRegistration;

@ -10,7 +10,6 @@ import static org.gcube.smartgears.provider.ProviderFactory.provider;
import java.io.File;
import java.io.FileOutputStream;
import java.io.ObjectOutputStream;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;

@ -0,0 +1 @@
/smartgears-config.xml
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