branch for release 4.2

git-svn-id: https://svn.d4science-ii.research-infrastructures.eu/gcube/branches/common/common-smartgears/2.1@134815 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
Lucio Lelii 2016-11-25 14:42:29 +00:00
commit 702a724422
124 changed files with 13172 additions and 0 deletions

41
.classpath Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" output="target/classes" path="src/main/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" path="target/generated-sources">
<attributes>
<attribute name="optional" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="output" path="target/classes"/>
</classpath>

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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>common-service</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.m2e.core.maven2Builder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
<nature>org.eclipse.m2e.core.maven2Nature</nature>
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1
distro/LICENSE Normal file
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${gcube.license}

70
distro/README Normal file
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The gCube System - ${name}
--------------------------------------------------
${description}
${gcube.description}
${gcube.funding}
Version
--------------------------------------------------
${version} (${buildDate})
Please see the file named "changelog.xml" in this directory for the release notes.
Authors
--------------------------------------------------
* Fabio Simeoni (fabio.simeoni@fao.org), FAO of the UN, Italy
* Luca Frosini (luca.frosini@isti.cnr.it), CNR, Italy
* Lucio Lelii (lucio.lelii@isti.cnr.it), CNT, Italy
Maintainers
-----------
* Luca Frosini (luca.frosini@isti.cnr.it), CNR, Italy
* Lucio Lelii (lucio.lelii@isti.cnr.it), CNT, Italy
Download information
--------------------------------------------------
Source code is available from SVN:
${scm.url}
Binaries can be downloaded from the gCube website:
${gcube.website}
Installation
--------------------------------------------------
Installation documentation is available on-line in the gCube Wiki:
${gcube.wikiRoot}/Smartgears
Documentation
--------------------------------------------------
Documentation is available on-line in the gCube Wiki:
${gcube.wikiRoot}/Smartgears
Support
--------------------------------------------------
Bugs and support requests can be reported in the gCube issue tracking tool:
${gcube.issueTracking}
Licensing
--------------------------------------------------
This software is licensed under the terms you may find in the file named "LICENSE" in this directory.

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distro/changelog.xml Normal file
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<ReleaseNotes>
<Changeset component="common-smartgears-2.1.0" date="2016-10-24">
<Change>proxy configuration added</Change>
<Change>solved a bug in events registration for ProfileManager</Change>
<Change>added a scheduler for period update of GCoreEnpoints</Change>
<Change>Exclude modified to support exclude for sub-group of handlers</Change>
</Changeset>
<Changeset component="common-smartgears-2.0.0" date="2016-03-10">
<Change>integration with Authorization 2.0</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.6" date="2015-12-22">
<Change>Added flush of accounting data</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.5" date="2015-12-22">
<Change>Changed accounting version</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.4" date="2015-10-06">
<Change>Transparent accounting added on service calls</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.3" date="2015-07-27">
<Change>Authorization token control added</Change>
<Change>Added support to HTTP Basic authorization</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.2" date="2015-04-27">
<Change>Fixed available space information on ghn profile</Change>
</Changeset>
<Changeset component="common-smartgears-1.2.1" date="2014-02-13">
<Change>scopes can be removed from container</Change>
<Change>node profile set to static</Change>
<Change>internal adjustments for move to Java 7</Change>
<Change>wildcard allowed in exclude directives</Change>
<Change>domain corrected derived in gHN profile</Change>
<Change>cleaner shutdown</Change>
<Change>further improvement in shutdown handling</Change>
</Changeset>
<Changeset component="common-smartgears-1.0.0" date="2013-10-24">
<Change>First Release</Change>
</Changeset>
</ReleaseNotes>

32
distro/descriptor.xml Normal file
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<assembly
xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0 http://maven.apache.org/xsd/assembly-1.1.0.xsd">
<id>servicearchive</id>
<formats>
<format>tar.gz</format>
</formats>
<baseDirectory>/</baseDirectory>
<fileSets>
<fileSet>
<directory>${distroDirectory}</directory>
<outputDirectory>/</outputDirectory>
<useDefaultExcludes>true</useDefaultExcludes>
<includes>
<include>README</include>
<include>LICENSE</include>
<include>changelog.xml</include>
<include>profile.xml</include>
</includes>
<fileMode>755</fileMode>
<filtered>true</filtered>
</fileSet>
</fileSets>
<files>
<file>
<source>target/${build.finalName}.${project.packaging}</source>
<outputDirectory>/${artifactId}</outputDirectory>
</file>
</files>
</assembly>

26
distro/profile.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<ID />
<Type>Service</Type>
<Profile>
<Description>${description}</Description>
<Class>Common</Class>
<Name>${artifactId}</Name>
<Version>1.0.0</Version>
<Packages>
<Software>
<Name>${artifactId}</Name>
<Version>${version}</Version>
<MavenCoordinates>
<groupId>${groupId}</groupId>
<artifactId>${artifactId}</artifactId>
<version>${version}</version>
</MavenCoordinates>
<Files>
<File>${build.finalName}.jar</File>
</Files>
</Software>
</Packages>
</Profile>
</Resource>

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<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<smartgears version="${project.version}" />

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</data>
<key>ReadOnly</key>
<string>NO</string>
<key>RowAlign</key>
<integer>1</integer>
<key>RowSpacing</key>
<real>36</real>
<key>SheetTitle</key>
<string>Canvas 1</string>
<key>SmartAlignmentGuidesActive</key>
<string>YES</string>
<key>SmartDistanceGuidesActive</key>
<string>YES</string>
<key>UniqueID</key>
<integer>1</integer>
<key>UseEntirePage</key>
<false/>
<key>VPages</key>
<integer>1</integer>
<key>WindowInfo</key>
<dict>
<key>CurrentSheet</key>
<integer>0</integer>
<key>ExpandedCanvases</key>
<array>
<dict>
<key>name</key>
<string>Canvas 1</string>
</dict>
</array>
<key>Frame</key>
<string>{{320, -1}, {693, 774}}</string>
<key>ListView</key>
<true/>
<key>OutlineWidth</key>
<integer>142</integer>
<key>RightSidebar</key>
<false/>
<key>ShowRuler</key>
<true/>
<key>Sidebar</key>
<true/>
<key>SidebarWidth</key>
<integer>120</integer>
<key>VisibleRegion</key>
<string>{{0, 0}, {558, 619}}</string>
<key>Zoom</key>
<real>1</real>
<key>ZoomValues</key>
<array>
<array>
<string>Canvas 1</string>
<real>1</real>
<real>1</real>
</array>
</array>
</dict>
<key>saveQuickLookFiles</key>
<string>YES</string>
</dict>
</plist>

270
pom.xml Normal file
View File

@ -0,0 +1,270 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<artifactId>maven-parent</artifactId>
<groupId>org.gcube.tools</groupId>
<version>1.0.0</version>
<relativePath />
</parent>
<groupId>org.gcube.core</groupId>
<artifactId>common-smartgears</artifactId>
<version>2.1.0-SNAPSHOT</version>
<name>SmartGears</name>
<properties>
<distroDirectory>distro</distroDirectory>
<tomcat.version>7.0.42</tomcat.version>
<jersey.version>1.17.1</jersey.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<scm>
<connection>scm:svn:http://svn.d4science.research-infrastructures.eu/gcube/trunk/Common/${project.artifactId}</connection>
<developerConnection>scm:svn:https://svn.d4science.research-infrastructures.eu/gcube/trunk/Common/${project.artifactId}</developerConnection>
<url>http://svn.d4science.research-infrastructures.eu/gcube/trunk/Common/${project.artifactId}</url>
</scm>
<dependencies>
<dependency>
<groupId>org.gcube.common</groupId>
<artifactId>authorization-client</artifactId>
<version>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.common</groupId>
<artifactId>common-authorization</artifactId>
<version>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.data.publishing</groupId>
<artifactId>document-store-lib</artifactId>
<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.accounting</groupId>
<artifactId>accounting-lib</artifactId>
<version>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.5</version>
</dependency>
<dependency>
<groupId>org.gcube.resources</groupId>
<artifactId>registry-publisher</artifactId>
<version>[1.0.0-SNAPSHOT, 2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.resources</groupId>
<artifactId>common-gcore-resources</artifactId>
<version>[1.0.0-SNAPSHOT, 2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-validator</artifactId>
<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-scope</artifactId>
<version>[1.0.0-SNAPSHOT, 2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-events</artifactId>
<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.0.1</version>
<scope>provided</scope>
</dependency>
<!-- ***************** test ******************* -->
<dependency>
<groupId>org.jboss.shrinkwrap.resolver</groupId>
<artifactId>shrinkwrap-resolver-depchain</artifactId>
<version>2.0.0-beta-2</version>
<type>pom</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-client</artifactId>
<version>${jersey.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.tomcat.embed</groupId>
<artifactId>tomcat-embed-core</artifactId>
<version>${tomcat.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.tomcat.embed</groupId>
<artifactId>tomcat-embed-logging-log4j</artifactId>
<version>${tomcat.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.tomcat.embed</groupId>
<artifactId>tomcat-embed-jasper</artifactId>
<version>${tomcat.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.0.13</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>1.9.0</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.2</version>
<configuration>
<descriptors>
<descriptor>${distroDirectory}/descriptor.xml</descriptor>
</descriptors>
</configuration>
<executions>
<execution>
<id>servicearchive</id>
<phase>install</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- excludes probe package from jar -->
<plugin>
<artifactId>maven-jar-plugin</artifactId>
<version>2.3.2</version>
<executions>
<execution>
<id>default-jar</id>
<phase>package</phase>
<goals>
<goal>jar</goal>
</goals>
<configuration>
<excludes>
<exclude>**/probe/**/*</exclude>
</excludes>
</configuration>
</execution>
</executions>
</plugin>
<!-- include probe in attached war -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.4</version>
<configuration>
<primaryArtifact>false</primaryArtifact>
<classifier>probe</classifier>
<packagingIncludes>WEB-INF/classes/org/gcube/smartgears/probe/**/*</packagingIncludes>
<failOnMissingWebXml>false</failOnMissingWebXml>
</configuration>
<executions>
<execution>
<id>probe-war</id>
<phase>package</phase>
<goals>
<goal>war</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.15</version>
<configuration>
<!-- tomcat annotation discovery won't work with the default manifest-only
jar -->
<useManifestOnlyJar>false</useManifestOnlyJar>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.6</version>
<executions>
<!-- interpolates and copies configuration.properties -->
<execution>
<id>copy-configuration</id>
<goals>
<goal>copy-resources</goal>
</goals>
<phase>validate</phase>
<configuration>
<outputDirectory>src/main/resources/META-INF</outputDirectory>
<overwrite>true</overwrite>
<encoding>UTF-8</encoding>
<resources>
<resource>
<directory>${distroDirectory}</directory>
<includes>
<include>smartgears-config.xml</include>
</includes>
<filtering>true</filtering>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>

View File

@ -0,0 +1,149 @@
package org.gcube.smartgears;
import java.util.Set;
import javax.servlet.ServletContainerInitializer;
import javax.servlet.ServletContext;
import javax.servlet.ServletException;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.managers.ApplicationManager;
import org.gcube.smartgears.managers.ContainerManager;
import org.gcube.smartgears.provider.ProviderFactory;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Bootstraps management of all deployed applications which require it.
*
* @author Fabio Simeoni
*
*/
public class Bootstrap implements ServletContainerInitializer {
private static Logger log = LoggerFactory.getLogger(Bootstrap.class);
private static boolean smartgearsHasStarted = false;
private static boolean containerHasFailed = false;
private static ContainerManager manager;
private static ContainerContext context;
public Bootstrap() {
if (smartgearsHasStarted)
return;
smartgearsHasStarted = true;
initialiseContainer();
//this can fail the app: managed resources need a working container
startContainerIfItHasntAlreadyFailed();
}
@Override
public void onStartup(Set<Class<?>> c, ServletContext application) throws ServletException {
ApplicationManager appManager = new ApplicationManager();
//act only on resources
if (isResource(application)) {
try {
log.info("starting management of application @ {}", application.getContextPath());
ApplicationContext app = appManager.start(context, application);
manager.manage(app);
context.configuration().app(app.configuration());
} catch (Throwable t) {
appManager.stop();
throw new ServletException("cannot manage application @ " + application.getContextPath()
+ " (see cause)", t);
}
}
}
// helpers
private void initialiseContainer() {
try {
log.trace("smartgears is starting");
/* Get the ContainerContext. Look at DefaultProvider */
context = ProviderFactory.provider().containerContext();
/* Validate the configuration retrieved by ContainerContext
* using gcube facilities annotation based
* ( i.e org.gcube.common.validator.annotations)
*/
context.configuration().validate();
} catch (RuntimeException e) {
containerHasFailed = true;
log.error("cannot start smartgears", e);
//we let the container continue
}
}
private void startContainerIfItHasntAlreadyFailed() {
if (containerHasFailed)
throw new IllegalStateException("container is not managed due to previous failure");
ClassLoader contextCL = Thread.currentThread().getContextClassLoader();
// we initialise the container in the same classloader as this
// lib, lest container bind its resources to the current webapp
try {
// TODO Ask why is needed?
Thread.currentThread().setContextClassLoader(ContainerManager.class.getClassLoader());
manager = ContainerManager.instance;
context = manager.start(context);
} catch (RuntimeException e) {
containerHasFailed = true;
throw new IllegalStateException("cannot manage container", e);
}
finally {//restore the classloader of the current application
Thread.currentThread().setContextClassLoader(contextCL);
}
}
private boolean isResource(ServletContext application) {
//with care: smartgears may have already failed at this stage but we want to recognise
//apps that would have been managed otherwise and give specific errors for those
return (!containerHasFailed && context.configuration().app(application.getContextPath())!=null)
||
application.getResourceAsStream(Constants.configuration_file_path) != null;
}
}

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package org.gcube.smartgears;
import org.gcube.smartgears.extensions.resource.RemoteResource;
import org.gcube.smartgears.handlers.application.lifecycle.ProfileManager;
import org.gcube.smartgears.handlers.application.request.RequestValidator;
import org.gcube.smartgears.handlers.container.lifecycle.AccountingManager;
/**
* Library-wide constants.
*
*
* @author Fabio Simeoni
*
*/
public class Constants {
/**
* The environment variable that points to the container configuration directory.
*/
public static final String ghn_home_env = "GHN_HOME";
/**
* The system property that points to the container configuration directory.
*/
public static final String ghn_home_property = "ghn.home";
/**
* The container configuration file path, relative to the container configuration directory.
*/
public static final String container_configuraton_file_path = "container.xml";
/**
* The path of the application profile file, relative to the container configuration directory.
*/
public static final String container_profile_file_path = "ghn.xml";
public static final String container_profile_file_path_copy = "ghn.xml.copy";
/**
* The container lifecycle configuration resource path.
*/
public static final String container_handlers_file_path = "/META-INF/container-handlers.xml";
/**
* The library configuration resource path.
*/
public static final String library_configuration_file_path = "/META-INF/smartgears-config.xml";
/**
* The name of the context property that contains the node profile.
*/
public static final String container_profile_property = "ghn-profile";
/**
* The default value of for the container publication frequency.
*/
public static final long default_container_publication_frequency_in_seconds = 60;
/**
* The application configuration resource path.
*/
public static final String configuration_file_path = "/WEB-INF/gcube-app.xml";
/**
* The application lifecycle configuration resource path.
*/
public static final String handlers_file_path = "/WEB-INF/gcube-handlers.xml";
/**
* The default application lifecycle configuration resource path.
*/
public static final String default_handlers_file_path = "/META-INF/default-handlers.xml";
/**
* The wildcard exclude directive.
*/
public static final String EXCLUDE_ALL = "*";
/**
* The mapping root of all extensions.
*/
public static final String root_mapping = "/gcube/resource";
/**
* The application extensions configuration resource path.
*/
public static final String extensions_file_path = "/WEB-INF/gcube-extensions.xml";
/**
* The default application extensions configuration resource path.
*/
public static final String default_extensions_file_path = "/META-INF/default-extensions.xml";
/**
* The application frontpage resource path.
*/
public static final String frontpage_file_path = "/META-INF/frontpage.html";
/**
* The configuration name of {@link ProfileManager}s.
*/
public static final String profile_management = "profile-management";
/**
* The configuration name of {@link RequestValidator}s.
*/
public static final String request_validation = "request-validation";
/**
* The configuration name of {@link AccountingManager}s.
*/
public static final String accounting_management = "accounting-management";
/**
* The configuration name of {@link RequestAccounting}s.
*/
public static final String request_accounting = "request-accounting";
/**
* The configuration name of {@link RemoteResource}s.
*/
public static final String remote_management = "remote-management";
/**
* The path of the application profile file, relative to the service configuration directory.
*/
public static final String profile_file_path = "endpoint.xml";
/**
* The name of the context property that contains the endpoint profile.
*/
public static final String profile_property = "endpoint-profile";
/**
* The name of the attribute in the servlet context that contains the context of an application.
*/
public static final String context_attribute ="gcube-application-context";
/**
* The name of the HTTP header that contains the scope of requests
*/
public static final String scope_header="gcube-scope";
/**
* The name of the HTTP header that contains the authorization token of requests
*/
public static final String token_header="gcube-token";
/**
* The event for token registration for app.
*/
public static final String token_registered = "token-registered";
/**
* The event for token removal for app.
*/
public static final String token_removed = "token-removed";
/**
* The name of the HTTP header for standard HTTP basic authorization
*/
public static final String authorization_header ="Authorization";
/**
* The name of the HTTP header that contains the called method of the current request
*/
public static final String called_method_header="gcube-method";
/**
* The name of the Content-Type HTTP header
*/
public static final String content_type="Content-Type";
/**
* The name of the Accept HTTP header
*/
public static final String accept="Accept";
/**
* The name of the Allow HTTP header
*/
public static final String allow="Allow";
/**
* The name of the XML media type.
*/
public static final String plain_text="text/plain";
/**
* The name of the XML media type.
*/
public static final String application_xml="application/xml";
/**
* The name of the XHTML media type.
*/
public static final String application_xhtml="application/xhtml+xml";
/**
* The name of the Json media type.
*/
public static final String application_json="application/json";
public static final int application_republish_frequency_in_minutes = 20;
}

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package org.gcube.smartgears.configuration;
/**
* The management mode the container or its applications.
*
* @author Fabio Simeoni
*
*/
public enum Mode {
online,
offline
}

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package org.gcube.smartgears.configuration.application;
import java.util.Set;
import org.gcube.smartgears.configuration.Mode;
import org.gcube.smartgears.persistence.Persistence;
/**
* The configuration of the application.
*
* @author Fabio Simeoni
*
*/
public interface ApplicationConfiguration {
/**
* Returns the management mode of the application.
* @return the management mode
*/
Mode mode();
/**
* Returns true if the application is secure (accessible only in https).
* @return secure or not
*/
boolean secure();
/**
* Returns true if the application is behind a proxy.
* @return secure or not
*/
ApplicationConfiguration proxied(boolean proxied);
/**
* Returns the context path of the application
* @return the context path
*/
String context();
boolean proxied();
/**
* Sets the context path of the application
* @param context the context path
* @return this configuration
*/
ApplicationConfiguration context(String context);
/**
* Sets the management mode of this application.
* @param the management mode
* @return this configuration
*/
ApplicationConfiguration mode(Mode mode);
ApplicationConfiguration secure(boolean value);
/**
* Returns the name of the application.
* @return the name
*/
String name();
/**
* Sets the name of the application.
* @param name the name
* @return this configuration
*/
ApplicationConfiguration name(String name);
/**
* Returns the class of the application
* @return the class
*/
String serviceClass();
/**
* Sets the class of the application.
* @param serviceClass the class
* @return this configuration
*/
ApplicationConfiguration serviceClass(String serviceClass);
/**
* Returns the version of the application.
* @return the version
*/
String version();
/**
* Sets the version of the application.
* @param version the version
* @return this configuration
*/
ApplicationConfiguration version(String version);
/**
* Returns the description of the application.
* @return the description
*/
String description();
/**
* Sets the description of the application.
* @param description the description
* @return this configuration
*/
ApplicationConfiguration description(String description);
/**
* Returns the tokens in which the application operates when it first starts.
* @return the tokens
*/
Set<String> startTokens();
/**
* Sets the tokens in which the application operates when it first starts.
* @param scopes the scopes
* @return this configuration
*/
ApplicationConfiguration startTokens(Set<String> tokens);
/**
* Returns the persistence manager of the application.
* @return the manager
*/
Persistence persistence();
/**
* Returns a set of request paths that should not be subjected to request management.
* @return the set of exclude paths.
*/
Set<Exclude> excludes();
/**
* Sets the persistence manager of the application.
* @param manager the manager
* @return this configuration
*/
ApplicationConfiguration persistence(Persistence manager);
/**
* Validates this configuration.
*
* @throws IllegalStateException if the configuration is not valid
*/
void validate();
/**
* Merges this configuration with another configuration
* @param config the other configuration
*/
void merge(ApplicationConfiguration config);
ApplicationConfiguration excludes(Exclude ... excludes);
}

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package org.gcube.smartgears.configuration.application;
import static org.gcube.smartgears.utils.Utils.*;
import java.io.InputStream;
import java.lang.reflect.Modifier;
import java.util.HashSet;
import java.util.ServiceLoader;
import java.util.Set;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.JAXBException;
import org.gcube.smartgears.extensions.ApplicationExtension;
import org.gcube.smartgears.handlers.application.ApplicationHandler;
/**
* Binds {@link ApplicationConfiguration}s to and from XML serialisations.
*
* @author Fabio Simeoni
*
*/
public class ApplicationConfigurationBinder {
/**
* Returns the application configuration from its XML serialisation.
*
* @param stream the serialisation
* @return the configuration
* @throws RuntimeException if the serialisation is invalid
*/
public ApplicationConfiguration bind(InputStream stream) {
try {
JAXBContext ctx = JAXBContext.newInstance(DefaultApplicationConfiguration.class);
return (ApplicationConfiguration) ctx.createUnmarshaller().unmarshal(stream);
} catch (JAXBException e) {
throw new RuntimeException("invalid service configuration", e);
}
finally {
closeSafely(stream);
}
}
/**
* Returns the handlers of the application from their XML serialisation.
*
* @param stream the serialisation
* @return the handlers
* @throws RuntimeException if the serialisation is invalid
*/
public ApplicationHandlers bindHandlers(InputStream stream) {
//collects handler classes
Set<Class<?>> classes = scanForHandlers();
try {
JAXBContext ctx = JAXBContext.newInstance(classes.toArray(new Class<?>[0]));
return (ApplicationHandlers) ctx.createUnmarshaller().unmarshal(stream);
} catch (JAXBException e) {
throw unchecked(e);
}
finally {
closeSafely(stream);
}
}
/**
* Returns the extensions of the application from their XML serialisation.
*
* @param stream the serialisation
* @return the extensions
* @throws RuntimeException if the serialisation is invalid
*/
public ApplicationExtensions bindExtensions(InputStream stream) {
//collects handler classes
Set<Class<?>> classes = scanForExtensions();
try {
JAXBContext ctx = JAXBContext.newInstance(classes.toArray(new Class<?>[0]));
return (ApplicationExtensions) ctx.createUnmarshaller().unmarshal(stream);
} catch (JAXBException e) {
throw unchecked(e);
}
finally {
closeSafely(stream);
}
}
private Set<Class<?>> scanForHandlers() throws RuntimeException {
@SuppressWarnings("all")
ServiceLoader<ApplicationHandler> handlerLoader = (ServiceLoader) ServiceLoader.load(ApplicationHandler.class);
Set<Class<?>> scanned = new HashSet<Class<?>>();
for (ApplicationHandler<?> handler : handlerLoader) {
Class<?> handlerClass = handler.getClass();
if (handlerClass.isInterface() || handlerClass.getModifiers() == Modifier.ABSTRACT)
continue;
else
scanned.add(handlerClass);
}
//add top-level configuration
scanned.add(ApplicationHandlers.class);
return scanned;
}
private Set<Class<?>> scanForExtensions() throws RuntimeException {
@SuppressWarnings("all")
ServiceLoader<ApplicationExtension> handlerLoader = (ServiceLoader) ServiceLoader.load(ApplicationExtension.class);
Set<Class<?>> scanned = new HashSet<Class<?>>();
for (ApplicationExtension handler : handlerLoader) {
Class<?> handlerClass = handler.getClass();
if (handlerClass.isInterface() || handlerClass.getModifiers() == Modifier.ABSTRACT)
continue;
else
scanned.add(handlerClass);
}
//add top-level configuration
scanned.add(ApplicationExtensions.class);
return scanned;
}
}

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package org.gcube.smartgears.configuration.application;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import javax.xml.bind.Unmarshaller;
import javax.xml.bind.annotation.XmlAnyElement;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.validator.ValidationError;
import org.gcube.common.validator.Validator;
import org.gcube.common.validator.ValidatorFactory;
import org.gcube.common.validator.annotations.IsValid;
import org.gcube.smartgears.extensions.ApplicationExtension;
import org.w3c.dom.Element;
/**
* The {@link ApplicationExtension}s that manage the application.
*
* @author Fabio Simeoni
*
*/
@XmlRootElement(name="extensions")
public class ApplicationExtensions {
@XmlAnyElement(lax=true) @IsValid
List<ApplicationExtension> extensions = new ArrayList<ApplicationExtension>();
public ApplicationExtensions() {}
/**
* Returns the extensions for the application.
* @return the extensions
*/
public List<ApplicationExtension> extensions() {
return extensions;
}
/**
* Sets the extensions for the application.
* @param extensions the extensions
* @return this configuration
*/
public ApplicationExtensions set(ApplicationExtension ... extensions) {
this.extensions = Arrays.asList(extensions);
return this;
}
@Override
public String toString() {
return extensions.toString();
}
public void validate() {
List<String> msgs = new ArrayList<String>();
Validator validator = ValidatorFactory.validator();
for (ValidationError error : validator.validate(this))
msgs.add(error.toString());
if (!msgs.isEmpty())
throw new IllegalStateException("invalid configuration: "+msgs);
}
//since we use @AnyElement, after deserialisation, we check there are no DOM elements
void afterUnmarshal(Unmarshaller u, Object parent) {
for (Object o : extensions)
if (o instanceof Element)
throw new RuntimeException("invalid extensions detected: "+Element.class.cast(o).getLocalName());
}
}

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package org.gcube.smartgears.configuration.application;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import javax.xml.bind.Unmarshaller;
import javax.xml.bind.annotation.XmlAnyElement;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.validator.ValidationError;
import org.gcube.common.validator.Validator;
import org.gcube.common.validator.ValidatorFactory;
import org.gcube.common.validator.annotations.IsValid;
import org.gcube.smartgears.handlers.application.ApplicationHandler;
import org.gcube.smartgears.handlers.application.ApplicationLifecycleHandler;
import org.gcube.smartgears.handlers.application.RequestHandler;
import org.w3c.dom.Element;
/**
* The {@link ApplicationHandler}s that manage the application.
*
* @author Fabio Simeoni
*
*/
@XmlRootElement(name="handlers")
public class ApplicationHandlers {
@XmlElement(name="lifecycle") @IsValid
private LifecycleHandlers lifecycleHandlers = new LifecycleHandlers();
@XmlElement(name="request") @IsValid
private RequestHandlers requestHandlers = new RequestHandlers();
public ApplicationHandlers() {}
/**
* Returns the {@link ApplicationLifecycleHandler}s for the service.
* @return the lifecycle handlers
*/
public List<ApplicationLifecycleHandler> lifecycleHandlers() {
return lifecycleHandlers.values;
}
/**
* Sets the {@link ApplicationLifecycleHandler}s for the service.
* @param handlers the lifecycle handlers
* @return this configuration
*/
public ApplicationHandlers set(ApplicationLifecycleHandler ... handlers) {
this.lifecycleHandlers = new LifecycleHandlers(Arrays.asList(handlers));
return this;
}
/**
* Returns the {@link RequestHandler}s for the service.
* @return the lifetime handlers
*/
public List<RequestHandler> requestHandlers() {
return requestHandlers.values;
}
/**
* Sets the {@link RequestHandler}s for the service.
* @param handlers the request handlers
* @return this configuration
*/
public ApplicationHandlers set(RequestHandler ... handlers) {
this.requestHandlers = new RequestHandlers(Arrays.asList(handlers));
return this;
}
public void validate() {
List<String> msgs = new ArrayList<String>();
Validator validator = ValidatorFactory.validator();
for (ValidationError error : validator.validate(this))
msgs.add(error.toString());
if (!msgs.isEmpty())
throw new IllegalStateException("invalid configuration: "+msgs);
}
//////////////// HELPER BINDING CLASSES
//used internally to introduce level of nesting in JAXB whilst preserving arbitrary extension
private static class LifecycleHandlers {
@SuppressWarnings("all")
LifecycleHandlers() { //needed for deserialisation
}
LifecycleHandlers(List<ApplicationLifecycleHandler> handlers) {
this.values=handlers;
}
@XmlAnyElement(lax=true)
List<ApplicationLifecycleHandler> values = new ArrayList<ApplicationLifecycleHandler>();
//since we use @AnyElement, after deserialisation, we check there are no DOM elements
@SuppressWarnings("unused")
void afterUnmarshal(Unmarshaller u, Object parent) {
for (Object o : values)
if (o instanceof Element)
throw new RuntimeException("invalid handler detected in configuration: "+Element.class.cast(o).getLocalName());
}
}
//used internally to introduce level of nesting in JAXB whilst preserving arbitrary extension
private static class RequestHandlers {
@SuppressWarnings("all")
RequestHandlers() { //needed for deserialisation
}
RequestHandlers(List<RequestHandler> handlers) {
this.values=handlers;
}
@XmlAnyElement(lax=true)
List<RequestHandler> values = new ArrayList<RequestHandler>();
//since we use @AnyElement, after deserialisation, we check there are no DOM elements
@SuppressWarnings("unused")
void afterUnmarshal(Unmarshaller u, Object parent) {
for (Object o : values)
if (o instanceof Element)
throw new RuntimeException("invalid handler detected in configuration: "+Element.class.cast(o).getLocalName());
}
}
}

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package org.gcube.smartgears.configuration.application;
import static org.gcube.smartgears.configuration.Mode.offline;
import java.io.File;
import java.util.Set;
import org.gcube.smartgears.configuration.Mode;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.persistence.DefaultPersistence;
import org.gcube.smartgears.persistence.Persistence;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
*
* @author Fabio Simeoni
* @author Luca Frosini (ISTI - CNR) http://www.lucafrosini.com/
*/
public class BridgedApplicationConfiguration implements ApplicationConfiguration {
private static Logger log = LoggerFactory.getLogger(ApplicationConfiguration.class);
private final ContainerConfiguration container;
private final ApplicationConfiguration application;
public BridgedApplicationConfiguration(ContainerConfiguration container, ApplicationConfiguration config) {
this.container=container;
this.application=config;
if (application.persistence()==null) {
String location = container.persistence().location()+"/"+application.name();
File dir = new File(location);
if (!dir.exists())
dir.mkdirs();
application.persistence(new DefaultPersistence(location));
log.trace("setting persistence location for {} @ {}",application.name(), dir.getAbsolutePath());
}
if (container.proxyAddress()==null)
application.proxied(false);
}
public ApplicationConfiguration inner() {
return application;
}
public Mode mode() {
return container.mode()==offline?offline:application.mode();
}
@Override
public String context() {
return application.context();
}
@Override
public ApplicationConfiguration context(String context) {
return application.context(context);
}
public String name() {
return application.name();
}
public ApplicationConfiguration name(String name) {
return application.name(name);
}
public String serviceClass() {
return application.serviceClass();
}
public ApplicationConfiguration serviceClass(String group) {
return application.serviceClass(group);
}
public String version() {
return application.version();
}
public ApplicationConfiguration version(String version) {
return application.version(version);
}
public String description() {
return application.description();
}
public ApplicationConfiguration description(String description) {
return application.description(description);
}
public Persistence persistence() {
return application.persistence();
}
public ApplicationConfiguration persistence(Persistence manager) {
return application.persistence(manager);
}
public ApplicationConfiguration mode(Mode mode) {
return application.mode(mode);
}
public void validate() {
application.validate();
}
@Override
public Set<Exclude> excludes() {
return application.excludes();
}
@Override
public void merge(ApplicationConfiguration config) {
application.merge(config);
}
@Override
public boolean secure() {
return application.secure();
}
@Override
public ApplicationConfiguration secure(boolean value) {
return application.secure(value);
}
@Override
public Set<String> startTokens() {
return application.startTokens();
}
@Override
public ApplicationConfiguration startTokens(Set<String> tokens) {
return application.startTokens(tokens);
}
@Override
public ApplicationConfiguration proxied(boolean proxied) {
return application.proxied(proxied);
}
@Override
public boolean proxied() {
return application.proxied();
}
@Override
public ApplicationConfiguration excludes(Exclude ... excludes) {
return application.excludes(excludes);
}
}

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package org.gcube.smartgears.configuration.application;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashSet;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.Set;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementRef;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlTransient;
import org.gcube.common.validator.ValidationError;
import org.gcube.common.validator.Validator;
import org.gcube.common.validator.ValidatorFactory;
import org.gcube.common.validator.annotations.IsValid;
import org.gcube.common.validator.annotations.NotNull;
import org.gcube.smartgears.configuration.Mode;
import org.gcube.smartgears.persistence.DefaultPersistence;
import org.gcube.smartgears.persistence.Persistence;
/**
* The configuration of a managed app.
* <p>
* Includes the list of its client services.
*
* @author Fabio Simeoni
* @author Luca Frosini (ISTI - CNR) http://www.lucafrosini.com/
*
*/
@XmlRootElement(name="application")
public class DefaultApplicationConfiguration implements ApplicationConfiguration {
@XmlAttribute
private Mode mode = Mode.online;
@XmlAttribute(name="isSecure")
private boolean secure = false;
@XmlAttribute(name="context")
String context;
@XmlAttribute(name="proxied")
private boolean proxied = true;
@XmlElement(name="name" , required=true)
@NotNull
String name;
@XmlElement(name="group", required=true)
@NotNull
String group;
@XmlElement(name="version", required=true)
@NotNull
String version;
@XmlTransient
Set<String> tokens = new HashSet<String>();
@XmlElement(name="description")
String description="";
@XmlElementRef
Set<Exclude> excludes= new LinkedHashSet<Exclude>();
@XmlElementRef(type=DefaultPersistence.class)
@NotNull @IsValid
private Persistence persistenceManager;
@Override
public Set<Exclude> excludes() {
return excludes;
}
public DefaultApplicationConfiguration() {}
@Override
public Mode mode() {
return mode;
}
@Override
public boolean secure() {
return secure;
}
@Override
public String name() {
return name;
}
@Override
public String context() {
return context;
}
@Override
public ApplicationConfiguration context(String context) {
this.context=context;
return this;
}
@Override
public ApplicationConfiguration excludes(Exclude ... excludes) {
this.excludes=new HashSet<Exclude>(Arrays.asList(excludes));
return this;
}
@Override
public ApplicationConfiguration name(String name) {
this.name=name;
return this;
}
@Override
public String serviceClass() {
return group;
}
@Override
public boolean proxied() {
return proxied;
}
@Override
public ApplicationConfiguration proxied(boolean proxied) {
this.proxied = proxied;
return this;
}
@Override
public ApplicationConfiguration serviceClass(String group) {
this.group=group;
return this;
}
@Override
public String version() {
return version;
}
@Override
public ApplicationConfiguration version(String version) {
this.version=version;
return this;
}
@Override
public Set<String> startTokens() {
return tokens;
}
@Override
public ApplicationConfiguration startTokens(Set<String> tokens) {
this.tokens.addAll(tokens);
return this;
}
@Override
public String description() {
return description;
}
@Override
public ApplicationConfiguration description(String description) {
this.description=description;
return this;
}
@Override
public Persistence persistence() {
return persistenceManager;
}
@Override
public ApplicationConfiguration persistence(Persistence manager) {
this.persistenceManager=manager;
return this;
}
@Override
public ApplicationConfiguration secure(boolean value) {
this.secure=value;
return this;
}
@Override
public ApplicationConfiguration mode(Mode mode) {
this.mode=mode;
return this;
}
@Override
public void validate() {
List<String> msgs = new ArrayList<String>();
Validator validator = ValidatorFactory.validator();
for (ValidationError error : validator.validate(this))
msgs.add(error.toString());
if (!msgs.isEmpty())
throw new IllegalStateException("invalid configuration: "+msgs);
}
@Override
public void merge(ApplicationConfiguration config) {
mode(config.mode());
if (config.persistence()!=null)
persistence(config.persistence());
//scopes.addAll(config.startScopes());
}
@Override
public String toString() {
return "DefaultApplicationConfiguration [mode=" + mode + ", secure="
+ secure + ", context=" + context + ", proxied=" + proxied
+ ", name=" + name + ", group=" + group + ", version="
+ version + ", tokens=" + tokens + ", description="
+ description + ", excludes=" + excludes
+ ", persistenceManager=" + persistenceManager + "]";
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((context == null) ? 0 : context.hashCode());
result = prime * result + ((description == null) ? 0 : description.hashCode());
result = prime * result + ((excludes == null) ? 0 : excludes.hashCode());
result = prime * result + ((group == null) ? 0 : group.hashCode());
result = prime * result + ((mode == null) ? 0 : mode.hashCode());
result = prime * result + ((name == null) ? 0 : name.hashCode());
result = prime * result + ((persistenceManager == null) ? 0 : persistenceManager.hashCode());
result = prime * result + ((tokens == null) ? 0 : tokens.hashCode());
result = prime * result + ((version == null) ? 0 : version.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
DefaultApplicationConfiguration other = (DefaultApplicationConfiguration) obj;
if (context == null) {
if (other.context != null)
return false;
} else if (!context.equals(other.context))
return false;
if (description == null) {
if (other.description != null)
return false;
} else if (!description.equals(other.description))
return false;
if (excludes == null) {
if (other.excludes != null)
return false;
} else if (!excludes.equals(other.excludes))
return false;
if (group == null) {
if (other.group != null)
return false;
} else if (!group.equals(other.group))
return false;
if (mode != other.mode)
return false;
if (name == null) {
if (other.name != null)
return false;
} else if (!name.equals(other.name))
return false;
if (persistenceManager == null) {
if (other.persistenceManager != null)
return false;
} else if (!persistenceManager.equals(other.persistenceManager))
return false;
if (tokens == null) {
if (other.tokens != null)
return false;
} else if (!tokens.equals(other.tokens))
return false;
if (version == null) {
if (other.version != null)
return false;
} else if (!version.equals(other.version))
return false;
if (secure!=other.secure)
return false;
return true;
}
}

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package org.gcube.smartgears.configuration.application;
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlValue;
@XmlRootElement(name="exclude")
@XmlAccessorType(XmlAccessType.FIELD)
public class Exclude {
@XmlAttribute(name="handlers")
private List<String> handlers = new ArrayList<String>();
@XmlValue
private String path;
public List<String> getHandlers() {
return handlers;
}
public String getPath() {
return path;
}
protected Exclude() {}
public Exclude(String path) {
super();
this.path = path;
}
public Exclude(List<String> handlers, String path) {
super();
this.handlers = handlers;
this.path = path;
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((path == null) ? 0 : path.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Exclude other = (Exclude) obj;
if (handlers == null) {
if (other.handlers != null)
return false;
} else if (!handlers.equals(other.handlers))
return false;
if (path == null) {
if (other.path != null)
return false;
} else if (!path.equals(other.path))
return false;
return true;
}
@Override
public String toString() {
return "Exclude [handlers=" + handlers + ", path=" + path + "]";
}
}

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package org.gcube.smartgears.configuration.container;
import static org.gcube.smartgears.Constants.default_container_publication_frequency_in_seconds;
import static org.gcube.smartgears.utils.Utils.notNull;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementRef;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlTransient;
import org.gcube.common.validator.ValidationError;
import org.gcube.common.validator.Validator;
import org.gcube.common.validator.ValidatorFactory;
import org.gcube.common.validator.annotations.IsValid;
import org.gcube.common.validator.annotations.NotEmpty;
import org.gcube.common.validator.annotations.NotNull;
import org.gcube.smartgears.configuration.Mode;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.configuration.application.DefaultApplicationConfiguration;
import org.gcube.smartgears.persistence.DefaultPersistence;
import org.gcube.smartgears.persistence.Persistence;
/**
* The configuration of the container.
*
* @author Fabio Simeoni
* @author Luca Frosini (ISTI - CNR) http://www.lucafrosini.com/
*/
@XmlRootElement(name="container")
public class ContainerConfiguration {
@XmlAttribute
private Mode mode = Mode.online;
@XmlElement
@NotNull
String hostname;
@XmlElement
@NotNull
Integer port;
@XmlElementRef
@IsValid
ProxyAddress proxyAddress;
@XmlElement(name ="authentication-endpoint")
String authenticationEnpoint = null;
@XmlElement(name ="secure-port")
Integer securePort;
@XmlElement
@NotNull
String infrastructure;
@XmlElement
@NotNull @IsValid
Site site;
@XmlElement(name="token")
@NotNull @NotEmpty
List<String> tokens = new ArrayList<String>();
@XmlTransient
Set<String> allowedContext = new HashSet<String>();
@XmlElementRef(type=DefaultApplicationConfiguration.class)
List<ApplicationConfiguration> apps = new ArrayList<ApplicationConfiguration>();
@XmlElement(name="property")
@IsValid
List<Property> properties = new ArrayList<Property>();
@XmlElement(name="publication-frequency")
long publicationFrequency = default_container_publication_frequency_in_seconds;
@XmlElementRef(type=DefaultPersistence.class)
@IsValid
private Persistence persistenceManager;
/**
* Returns the management mode for the container.
* @return the management mode
*/
public Mode mode() {
return mode;
}
/**
* Sets the management mode for the container.
* @param mode the management mode
* @return this configuration
*/
public ContainerConfiguration mode(Mode mode) {
this.mode=mode;
return this;
}
/**
* Returns the application configurations included in this configuration.
* @return the application configurations
*/
public List<ApplicationConfiguration> apps() {
return apps;
}
/**
* Returns the configuration of an application with a given context path.
* @param context the context path
* @return the application configuration
*/
public ApplicationConfiguration app(String context) {
for (ApplicationConfiguration app : apps)
if (context.equals(app.context()))
return app;
return null;
}
/**
* Adds the configuration of an application to this configuration.
* @param app the application configuration
* @return this configuration
*/
public synchronized ContainerConfiguration app(ApplicationConfiguration app) {
int indexToRemove =-1;
int index =0;
for (ApplicationConfiguration application : apps){
if (app.context().equals(application.context()))
indexToRemove = index;
index++;
}
if(indexToRemove!=-1)
apps.remove(indexToRemove);
apps.add(app);
return this;
}
/**
* Returns the geographical site of the container.
* @return the site
*/
public Site site() {
return site;
}
/**
* Sets the geographical site of the container.
* @param site the site
* @return this configuration
*/
public ContainerConfiguration site(Site site) {
this.site=site;
return this;
}
/**
* Returns the infrastructure in which the container is running.
* @return the infrastructure
*/
public String infrastructure() {
return infrastructure;
}
/**
* Sets the infrastructure in which the container is running.
* @param infrastructure the infrastructure
* @return this configuration
*/
public ContainerConfiguration infrastructure(String infrastructure) {
this.infrastructure=infrastructure;
return this;
}
/**
* Returns the host name of the container.
* @return the host name;
*/
public String hostname() {
return hostname;
}
/**
* Sets the host name of the container.
* @param name the host name
* @return this configuration
*/
public ContainerConfiguration hostname(String name) {
this.hostname=name;
return this;
}
/**
* Returns the port at which the container is listening for requests.
* @return the port
*/
public int port() {
return port;
}
/**
* Returns the port at which the container is listening for requests.
* @return the port
*/
public Integer securePort() {
return securePort;
}
public String authenticationEnpoint() {
return authenticationEnpoint;
}
public ContainerConfiguration authenticationEnpoint(String endpoint) {
this.authenticationEnpoint = endpoint;
return this;
}
/**
* Sets the port at which the container is listening for requests.
* @param port the port
* @return this configuration
*/
public ContainerConfiguration port(int port) {
this.port=port;
return this;
}
public ContainerConfiguration securePort(int port) {
this.securePort=port;
return this;
}
/**
* Returns the VOs in which the container initially operates.
* @return the VOs
*/
public List<String> startTokens() {
return tokens;
}
/**
* Sets the VOs in which the container initially operates.
* @param vos the VOs
* @return this configuration
*/
public ContainerConfiguration startTokens(List<String> tokens) {
notNull("start Tokens",tokens);
this.tokens = tokens;
return this;
}
public ProxyAddress proxyAddress() {
return proxyAddress;
}
public ContainerConfiguration setProxyaddress(ProxyAddress proxyaddress) {
this.proxyAddress = proxyaddress;
return this;
}
/**
* Returns the persistence manager of the container.
* @return the manager
*/
public Persistence persistence() {
return persistenceManager;
}
/**
* Sets the persistence manager of the container.
* @param manager the manager
* @return this configuration
*/
public ContainerConfiguration persistence(Persistence manager) {
this.persistenceManager=manager;
return this;
}
/**
* Returns the configuration properties of the container.
* @return the properties
*/
public Map<String,String> properties() {
Map<String,String> map = new HashMap<String, String>();
for (Property prop : properties)
map.put(prop.name, prop.value);
return map;
}
/**
* Adds a configuration property to the container.
* @param the name of the property
* @param the value of the property
* @return this configuration
*/
public ContainerConfiguration property(String name, String value) {
properties.add(new Property(name, value));
return this;
}
/**
* Returns the publication frequency for the container's profile.
* @return the frquency;
*/
public long publicationFrequency() {
return publicationFrequency;
}
/**
* Sets the publication frequency for the container's profile.
* @param frequency the frequency
* @return this configuration
*/
public ContainerConfiguration publicationFrequency(long frequency) {
this.publicationFrequency=frequency;
return this;
}
public Set<String> allowedContexts() {
return allowedContext;
}
public void allowedContexts(Set<String> allowedContexts) {
this.allowedContext = allowedContexts;
}
/**
* Validates this configuration
*
* @throws IllegalStateException if the configuration is invalid
*/
public void validate() {
List<String> msgs = new ArrayList<String>();
Validator validator = ValidatorFactory.validator();
for (ValidationError error : validator.validate(this))
msgs.add(error.toString());
if (!msgs.isEmpty())
throw new IllegalStateException("invalid configuration: "+msgs);
}
static class Property {
@XmlAttribute @NotNull
String name;
@XmlAttribute @NotNull
String value;
Property() {}
Property(String key, String value) {
this.name=key;
this.value=value;
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((name == null) ? 0 : name.hashCode());
result = prime * result + ((value == null) ? 0 : value.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Property other = (Property) obj;
if (name == null) {
if (other.name != null)
return false;
} else if (!name.equals(other.name))
return false;
if (value == null) {
if (other.value != null)
return false;
} else if (!value.equals(other.value))
return false;
return true;
}
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((apps == null) ? 0 : apps.hashCode());
result = prime * result + ((hostname == null) ? 0 : hostname.hashCode());
result = prime * result + ((infrastructure == null) ? 0 : infrastructure.hashCode());
result = prime * result + ((mode == null) ? 0 : mode.hashCode());
result = prime * result + ((persistenceManager == null) ? 0 : persistenceManager.hashCode());
result = prime * result + ((port == null) ? 0 : port.hashCode());
result = prime * result + ((properties == null) ? 0 : properties.hashCode());
result = prime * result + (int) (publicationFrequency ^ (publicationFrequency >>> 32));
result = prime * result + ((site == null) ? 0 : site.hashCode());
result = prime * result + ((tokens == null) ? 0 : tokens.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
ContainerConfiguration other = (ContainerConfiguration) obj;
if (apps == null) {
if (other.apps != null)
return false;
} else if (!apps.equals(other.apps))
return false;
if (hostname == null) {
if (other.hostname != null)
return false;
} else if (!hostname.equals(other.hostname))
return false;
if (infrastructure == null) {
if (other.infrastructure != null)
return false;
} else if (!infrastructure.equals(other.infrastructure))
return false;
if (mode != other.mode)
return false;
if (persistenceManager == null) {
if (other.persistenceManager != null)
return false;
} else if (!persistenceManager.equals(other.persistenceManager))
return false;
if (port == null) {
if (other.port != null)
return false;
} else if (!port.equals(other.port))
return false;
if (securePort == null) {
if (other.securePort != null)
return false;
} else if (!securePort.equals(other.securePort))
return false;
if (properties == null) {
if (other.properties != null)
return false;
} else if (!properties.equals(other.properties))
return false;
if (publicationFrequency != other.publicationFrequency)
return false;
if (site == null) {
if (other.site != null)
return false;
} else if (!site.equals(other.site))
return false;
if (tokens == null) {
if (other.tokens != null)
return false;
} else if (!tokens.equals(other.tokens))
return false;
return true;
}
}

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package org.gcube.smartgears.configuration.container;
import static org.gcube.smartgears.utils.Utils.*;
import java.io.InputStream;
import java.lang.reflect.Modifier;
import java.util.HashSet;
import java.util.ServiceLoader;
import java.util.Set;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.JAXBException;
import org.gcube.smartgears.handlers.container.ContainerHandler;
import org.gcube.smartgears.utils.Utils;
/**
* Binds {@link ContainerConfiguration}s to and from XML serialisations.
*
* @author Fabio Simeoni
*
*/
public class ContainerConfigurationBinder {
/**
* Returns a {@link ContainerConfiguration} from its XML serialisation.
*
* @param stream the serialisation
* @return the configuration
* @throws RuntimeException if the serialisation is invalid
*/
public ContainerConfiguration bind(InputStream stream) {
try {
JAXBContext ctx = JAXBContext.newInstance(ContainerConfiguration.class);
ContainerConfiguration config = (ContainerConfiguration) ctx.createUnmarshaller().unmarshal(stream);
return config;
} catch (JAXBException e) {
throw new RuntimeException("invalid container configuration", e);
}
finally {
Utils.closeSafely(stream);
}
}
/**
* Returns the handlers of the container from their XML serialisation.
*
* @param stream the serialisation
* @return the handlers
* @throws RuntimeException if the serialisation is invalid
*/
public ContainerHandlers bindHandlers(InputStream stream) {
//collects handler classes
Set<Class<?>> classes = scanForConfigurationElements();
try {
JAXBContext ctx = JAXBContext.newInstance(classes.toArray(new Class<?>[0]));
return (ContainerHandlers) ctx.createUnmarshaller().unmarshal(stream);
} catch (JAXBException e) {
throw unchecked(e);
}
}
private Set<Class<?>> scanForConfigurationElements() throws RuntimeException {
@SuppressWarnings("all")
ServiceLoader<ContainerHandler> handlerLoader = (ServiceLoader) ServiceLoader.load(ContainerHandler.class);
Set<Class<?>> scanned = new HashSet<Class<?>>();
for (ContainerHandler handler : handlerLoader) {
Class<?> handlerClass = handler.getClass();
if (handlerClass.isInterface() || handlerClass.getModifiers() == Modifier.ABSTRACT)
continue;
else
scanned.add(handlerClass);
}
//add top-level configuration
scanned.add(ContainerHandlers.class);
return scanned;
}
}

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package org.gcube.smartgears.configuration.container;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import javax.xml.bind.annotation.XmlAnyElement;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.smartgears.handlers.container.ContainerHandler;
/**
* The {@link ContainerHandler}s that manage the application.
*
* @author Fabio Simeoni
*
*/
@XmlRootElement(name="handlers")
public class ContainerHandlers {
@XmlAnyElement(lax=true)
List<ContainerHandler> handlers = new ArrayList<ContainerHandler>();
public ContainerHandlers() {}
/**
* Returns the {@link ContainerHandler}s for the service.
* @return the lifecycle handlers
*/
public List<ContainerHandler> get() {
return handlers;
}
/**
* Sets the {@link ContainerHandler}s for the service.
* @param handlers the lifecycle handlers
* @return this configuration
*/
public ContainerHandlers set(ContainerHandler ... handlers) {
this.handlers = Arrays.asList(handlers);
return this;
}
}

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package org.gcube.smartgears.configuration.container;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.validator.annotations.NotNull;
@XmlRootElement(name="proxy")
public class ProxyAddress {
@XmlAttribute
boolean secure = false;
@XmlElement
@NotNull
String hostname;
@XmlElement
@NotNull
int port;
public String hostname() {
return hostname;
}
public ProxyAddress hostname(String hostname) {
this.hostname = hostname;
return this;
}
public int port() {
return port;
}
public ProxyAddress port(int port) {
this.port = port;
return this;
}
public boolean secure() {
return secure;
}
public ProxyAddress secure(boolean secure) {
this.secure = secure;
return this;
}
}

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package org.gcube.smartgears.configuration.container;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.validator.annotations.NotNull;
/**
* The geographical site of the container.
*
* @author Fabio Simeoni
*
*/
@XmlRootElement(name="site")
public class Site {
@XmlElement
@NotNull
String country;
@XmlElement
@NotNull
String location;
@XmlElement
@NotNull
String latitude;
@XmlElement
@NotNull
String longitude;
/**
* Returns the country.
* @return the country
*/
public String country() {
return country;
}
/**
* Sets the country.
* @param the country
* @return this configuration
*/
public Site country(String country) {
this.country=country;
return this;
}
/**
* Returns the latitude.
* @return the latitude
*/
public String latitude() {
return latitude;
}
/**
* Sets the latitude.
* @param the latitude
* @return this configuration
*/
public Site latitude(String latitude) {
this.latitude=latitude;
return this;
}
/**
* Returns the longitude.
* @return the longitude
*/
public String longitude() {
return longitude;
}
/**
* Sets the longitude.
* @param the longitude
* @return this configuration
*/
public Site longitude(String longitude) {
this.longitude=longitude;
return this;
}
/**
* Returns the location.
* @return the location
*/
public String location() {
return location;
}
/**
* Sets the location.
* @param the location
* @return this location
*/
public Site location(String location) {
this.location=location;
return this;
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((country == null) ? 0 : country.hashCode());
result = prime * result + ((latitude == null) ? 0 : latitude.hashCode());
result = prime * result + ((location == null) ? 0 : location.hashCode());
result = prime * result + ((longitude == null) ? 0 : longitude.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Site other = (Site) obj;
if (country == null) {
if (other.country != null)
return false;
} else if (!country.equals(other.country))
return false;
if (latitude == null) {
if (other.latitude != null)
return false;
} else if (!latitude.equals(other.latitude))
return false;
if (location == null) {
if (other.location != null)
return false;
} else if (!location.equals(other.location))
return false;
if (longitude == null) {
if (other.longitude != null)
return false;
} else if (!longitude.equals(other.longitude))
return false;
return true;
}
}

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package org.gcube.smartgears.configuration.library;
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.validator.ValidationError;
import org.gcube.common.validator.Validator;
import org.gcube.common.validator.ValidatorFactory;
import org.gcube.common.validator.annotations.NotEmpty;
@XmlRootElement(name="smartgears")
public class SmartGearsConfiguration {
@XmlAttribute @NotEmpty
private String version;
public SmartGearsConfiguration(){
}
public String version() {
return version;
}
public SmartGearsConfiguration version(String version) {
this.version=version;
return this;
}
/**
* Validates this configuration
*
* @throws IllegalStateException if the configuration is invalid
*/
public void validate() {
List<String> msgs = new ArrayList<String>();
Validator validator = ValidatorFactory.validator();
for (ValidationError error : validator.validate(this))
msgs.add(error.toString());
if (!msgs.isEmpty())
throw new IllegalStateException("invalid configuration: "+msgs);
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((version == null) ? 0 : version.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
SmartGearsConfiguration other = (SmartGearsConfiguration) obj;
if (version == null) {
if (other.version != null)
return false;
} else if (!version.equals(other.version))
return false;
return true;
}
}

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package org.gcube.smartgears.configuration.library;
import java.io.InputStream;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.JAXBException;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.utils.Utils;
/**
* Binds {@link ContainerConfiguration}s to and from XML serialisations.
*
* @author Fabio Simeoni
*
*/
public class SmartGearsConfigurationBinder {
/**
* Returns a {@link ContainerConfiguration} from its XML serialisation.
*
* @param stream the serialisation
* @return the configuration
* @throws RuntimeException if the serialisation is invalid
*/
public SmartGearsConfiguration bind(InputStream stream) {
try {
JAXBContext ctx = JAXBContext.newInstance(SmartGearsConfiguration.class);
SmartGearsConfiguration config = (SmartGearsConfiguration) ctx.createUnmarshaller().unmarshal(stream);
return config;
} catch (JAXBException e) {
throw new RuntimeException("invalid library configuration", e);
}
finally {
Utils.closeSafely(stream);
}
}
}

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package org.gcube.smartgears.context;
import static org.gcube.smartgears.utils.Utils.*;
import java.util.Collection;
import java.util.HashMap;
import java.util.Iterator;
import java.util.Map;
/**
* A collection of uniquely named {@link Property}s.
*
* @author Fabio Simeoni
*
*/
public class Properties implements Iterable<Property> {
private final Map<String, Property> properties = new HashMap<String, Property>();
private Properties parent;
/**
* Creates an instance that delegates to another for unknown properties.
* @param parent the parent instance
*/
public Properties(Properties parent) {
this.parent=parent;
}
/**
* Creates an instance.
*/
public Properties() {}
@Override
public Iterator<Property> iterator() {
return properties.values().iterator();
}
/**
* Adds one or more properties to this collection.
*
* @param properties the properties
*/
public synchronized void add(Property ... properties) {
notNull("properties",properties);
for (Property property : properties)
this.properties.put(property.name(),property);
}
/**
* Returns <code>true</code> if this collection contains a given property.
*
* @param name the name of the property
* @return <code>true</code> if this collection contains a property with the given name
*/
public synchronized boolean contains(String name) {
notNull("property name",name);
return this.properties.containsKey(name) ||
parent==null?
false:
this.parent.contains(name);
}
/**
* Removes a given property.
*
* @param name the name of the property
*
* @throws IllegalStateException if a property with the given name does not exist in this collection
*/
public void delete(String name) {
notNull("property name",name);
if (this.properties.remove(name) == null)
if (parent==null)
throw new IllegalStateException("unknown property " + name);
else
parent.delete(name);
}
/**
* Returns a given property in this collection.
*
* @param name the name of the property
* @return the property
*
* @throws IllegalStateException if a property with a given name does not exist in this collection
*/
public synchronized Property lookup(String name) {
notNull("property name",name);
Property property = this.properties.get(name);
if (property == null)
if (parent==null)
throw new IllegalStateException("unknown property " + name);
else
property = parent.lookup(name);
return property;
}
/**
* Returns <code>true</code> if this collection has no properties.
*
* @return <code>true</code> if this collection has no properties
*/
public synchronized boolean isEmpty() {
return properties.isEmpty() || parent==null? true: parent.isEmpty();
}
@Override
public String toString() {
final int maxLen = 100;
return "board=" + (properties != null ? toString(properties.entrySet(), maxLen) : null);
}
private String toString(Collection<?> collection, int maxLen) {
StringBuilder builder = new StringBuilder();
builder.append("[");
int i = 0;
for (Iterator<?> iterator = collection.iterator(); iterator.hasNext() && i < maxLen; i++) {
if (i > 0)
builder.append(", ");
builder.append(iterator.next());
}
builder.append("]");
return builder.toString();
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((parent == null) ? 0 : parent.hashCode());
result = prime * result + ((properties == null) ? 0 : properties.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Properties other = (Properties) obj;
if (parent == null) {
if (other.parent != null)
return false;
} else if (!parent.equals(other.parent))
return false;
if (properties == null) {
if (other.properties != null)
return false;
} else if (!properties.equals(other.properties))
return false;
return true;
}
}

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package org.gcube.smartgears.context;
import static org.gcube.smartgears.utils.Utils.*;
/**
* A named property with a value and a description.
*
* @author Fabio Simeoni
*
*/
public class Property {
private final String name;
private final String description;
private final Object value;
private boolean display =true;
/**
* Creates an instance with a given name and value.
* @param name the name
* @param value the value
*/
public Property(String name, Object value) {
this(name,value,null);
}
/**
* Creates an instance with a given name, value, and description.
* @param name the name
* @param value the value
* @param description the description
*/
public Property(String name, Object value, String description) {
notNull("property name",name);
notNull("property value",value);
this.name=name;
this.description=description;
this.value=value;
}
/**
* Returns the name of this property.
* @return the name
*/
public String name() {
return name;
}
/**
* Sets whether the property is intended for display
* @param display <code>true</code> if the property is intended for display
*/
public void display(boolean display) {
this.display = display;
}
/**
* Returns <code>true</code> if the property is intended for display
* @return <code>true</code> if the property is intended for display
*/
public boolean isDisplay() {
return display;
}
/**
* Returns the value of this property.
*
* @return the value
*/
public Object value() {
return value;
}
/**
* Returns the value of this property under a given type.
*
* @return the value
*
* @throws IllegalStateException if the value cannot be returned under the given type.
*/
public <S> S value(Class<S> type) {
if (is(type))
return type.cast(value());
throw new IllegalStateException("property value "+value()+" of type "+value().getClass()+" cannot be typed as "+type.getCanonicalName());
}
/**
* Returns <code>true</code> if the value of this property has a given type.
* @param type the type
* @return <code>true</code> if the value of this property has a given type
*/
public boolean is(Class<?> type) {
return type.isInstance(value());
}
/**
* Returns the description of this property.
*
* @return the description
*/
public String description() {
return description;
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((description == null) ? 0 : description.hashCode());
result = prime * result + ((name == null) ? 0 : name.hashCode());
result = prime * result + ((value == null) ? 0 : value.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
Property other = (Property) obj;
if (description == null) {
if (other.description != null)
return false;
} else if (!description.equals(other.description))
return false;
if (name == null) {
if (other.name != null)
return false;
} else if (!name.equals(other.name))
return false;
if (value == null) {
if (other.value != null)
return false;
} else if (!value.equals(other.value))
return false;
return true;
}
@Override
public String toString() {
return name+"="+value;
}
}

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package org.gcube.smartgears.context.application;
import javax.servlet.ServletContext;
import org.gcube.common.events.Hub;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.context.Properties;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.lifecycle.application.ApplicationLifecycle;
import org.gcube.smartgears.persistence.Persistence;
/**
* The management context of an application.
*
* @author Fabio Simeoni
*
*/
public interface ApplicationContext {
String id();
/**
* Returns the name of the application.
*
* @return the name
*/
String name();
/**
* Returns the configuration of the application.
*
* @return the configuration
*/
ApplicationConfiguration configuration();
<T> T profile(Class<T> type);
/**
* Returns the lifecycle of the application.
*
* @return the lifecycle
*/
ApplicationLifecycle lifecycle();
/**
* Returns the event hub of the application
*
* @return the hub
*/
Hub events();
/**
* Returns the persistence manager of the application.
*
* @return the manager
*/
Persistence persistence();
/**
* Returns the servlet context of the application.
*
* @return the context
*/
ServletContext application();
/**
* Returns the management context of the container.
*
* @return the context
*/
ContainerContext container();
/**
* Returns the properties of the application
*
* @return the properties
*/
Properties properties();
}

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package org.gcube.smartgears.context.application;
import static org.gcube.smartgears.Constants.profile_property;
import javax.servlet.ServletContext;
import org.gcube.common.events.Hub;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.context.Properties;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.lifecycle.application.ApplicationLifecycle;
import org.gcube.smartgears.persistence.Persistence;
/**
* Default {@link ApplicationContext} implementation.
*
* @author Fabio Simeoni
*
*/
public class DefaultApplicationContext implements ApplicationContext {
private final ContainerContext container;
private final ServletContext sctx;
private final ApplicationConfiguration configuration;
private final ApplicationLifecycle lifecycle;
private final Properties properties;
private final Hub hub;
private final String id;
/**
* Crates an intance with mandatory parameters
* @param container the container context
* @param sctx the servlet context
* @param configuration the configuration
* @param hub the event hub
* @param lifecycle the lifecycle
* @param properties the properties
*/
public DefaultApplicationContext(String id,ContainerContext container,ServletContext sctx,ApplicationConfiguration configuration, Hub hub, ApplicationLifecycle lifecycle, Properties properties) {
this.id = id;
this.container=container;
this.sctx = sctx;
this.configuration=configuration;
this.hub=hub;
this.lifecycle = lifecycle;
this.properties=properties;
}
/**
* Creates an instance by copying the configuration of another.
* @param context the other instance
*/
public DefaultApplicationContext(ApplicationContext context) {
this(context.id(), context.container(),context.application(),context.configuration(),context.events(), context.lifecycle(), new Properties(context.properties()));
}
@Override
public ServletContext application() {
return sctx;
}
@Override
public ContainerContext container() {
return container;
}
@Override
@SuppressWarnings("all")
public <T> T profile(Class<T> type) {
if (type==GCoreEndpoint.class)
return (T) properties().lookup(profile_property).value(GCoreEndpoint.class);
throw new IllegalArgumentException("unsupported profile type: "+type);
}
@Override
public String name() { //little shortcut for ease of logging
return configuration.name();
}
@Override
public ApplicationConfiguration configuration() {
return configuration;
}
@Override
public ApplicationLifecycle lifecycle() {
return lifecycle;
}
@Override
public Hub events() {
return hub;
}
@Override
public Persistence persistence() {
return configuration.persistence();
}
@Override
public Properties properties() {
return properties;
}
@Override
public String id() {
return id;
}
}

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package org.gcube.smartgears.context.container;
import org.gcube.common.events.Hub;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.context.Properties;
import org.gcube.smartgears.lifecycle.container.ContainerLifecycle;
import org.gcube.smartgears.persistence.Persistence;
/**
* The management context of the container.
*
* @author Fabio Simeoni
*
*/
public interface ContainerContext {
/**
* Returns the configuration of the container.
* @return the configuration
*/
ContainerConfiguration configuration();
/**
* Returns the resource profile of a given type of the container.
* @return the profile
*/
<T> T profile(Class<T> type);
/**
* Returns the lifecycle of the container
* @return the lifecycle
*/
ContainerLifecycle lifecycle();
/**
* Returns the event hub of the container
* @return the hub
*/
Hub events();
/**
* Returns the persistence manager of the container.
* @return the manager
*/
Persistence persistence();
/**
* Returns the properties of the container.
* @return the properties
*/
Properties properties();
String id();
}

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package org.gcube.smartgears.context.container;
import static org.gcube.smartgears.Constants.*;
import org.gcube.common.events.Hub;
import org.gcube.common.resources.gcore.HostingNode;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.context.Properties;
import org.gcube.smartgears.lifecycle.container.ContainerLifecycle;
import org.gcube.smartgears.persistence.Persistence;
/**
* Default {@link ContainerContext} implementation.
*
* @author Fabio Simeoni
*
*/
public class DefaultContainerContext implements ContainerContext {
private final ContainerConfiguration configuration;
private final ContainerLifecycle lifecycle;
private final Properties properties;
private final Hub hub;
private final String id;
/**
* Creates an instance with mandatory parameters.
* @param configuration the configuration
* @param hub the event hub
* @param lifecycle the lifecycle
* @param properties the properties
*/
public DefaultContainerContext(String id,ContainerConfiguration configuration, Hub hub, ContainerLifecycle lifecycle,
Properties properties) {
this.id = id;
this.configuration=configuration;
this.hub=hub;
this.lifecycle = lifecycle;
this.properties=properties;
}
@SuppressWarnings("all")
public <T> T profile(Class<T> type) {
if (type==HostingNode.class)
return (T) properties().lookup(container_profile_property).value(HostingNode.class);
throw new IllegalArgumentException("unsupported profile type: "+type);
};
@Override
public ContainerConfiguration configuration() {
return configuration;
}
@Override
public ContainerLifecycle lifecycle() {
return lifecycle;
}
@Override
public Hub events() {
return hub;
}
@Override
public Persistence persistence() {
return configuration.persistence();
}
@Override
public Properties properties() {
return properties;
}
@Override
public String id() {
return id;
}
}

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package org.gcube.smartgears.extensions;
import static java.util.Arrays.*;
import static org.gcube.common.events.impl.Utils.*;
import java.util.HashSet;
import java.util.Set;
import org.gcube.smartgears.extensions.HttpExtension.Method;
public class ApiMethodSignature {
Method method;
Set<String> requestTypes = new HashSet<String>();
Set<String> responseTypes = new HashSet<String>();
public ApiMethodSignature(Method method) {
notNull("method",method);
this.method=method;
}
public ApiMethodSignature accepts(String ... types) {
notNull("request types",types);
this.requestTypes.addAll(asList(types));
return this;
}
public ApiMethodSignature produces(String ... types) {
notNull("response types",types);
this.responseTypes.addAll(asList(types));
return this;
}
}

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package org.gcube.smartgears.extensions;
import java.io.IOException;
import java.util.Collections;
import java.util.Set;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.smartgears.Constants;
import org.gcube.smartgears.configuration.application.Exclude;
/**
* A resource-specifc API handled by an {@link HttpController}.
*
* @author Fabio Simeoni
*
*/
public abstract class ApiResource extends HttpExtension {
private static final long serialVersionUID = 1L;
/**
* Returns a {@link ApiSignature} that declares the method and media types handled by an {@link ApiResource} for a given mapping.
* @param mapping the mapping
* @return the signature
*/
public static ApiSignature handles(String mapping) {
return new ApiSignature(mapping);
}
/**
* Returns an {@link ApiMethodSignature} that declares the media types handled by an {@link ApiResource} for a given method.
* @param method the method
* @return the signature
*/
public static ApiMethodSignature method(Method method) {
return new ApiMethodSignature(method);
}
private final ApiSignature signature;
/**
* Creates an instance with a given signature.
* @param signature the signature
*/
public ApiResource(ApiSignature signature) {
super("extension-resource", signature.mapping());
this.signature = signature;
}
@Override
public Set<Exclude> excludes() {
return Collections.singleton(new Exclude(Constants.root_mapping+mapping()));
}
/**
* Returns <code>true</code> if this resource supports a given method.
* @param method the method
* @return <code>true</code> if this resource supports the given method
*/
public boolean supports(Method method) {
return signature.methods().contains(method);
}
/**
* Returns <code>true</code> if this resource accepts a given media type for a given method.
* @param method the method
* @param type the media type
* @return <code>true</code> if this resource accepts the given media type for the given method
*/
public boolean accepts(Method method, String type) {
Set<String> requestTypes = signature.requestTypes().get(method);
//if signature does not specify, we assume resource can work with anything or uses a default and is in charge
return requestTypes.isEmpty() || requestTypes.contains(type);
}
/**
* Returns <code>true</code> if this resource produces a given media type for a given method.
* @param method the method
* @param type the media type
* @return <code>true</code> if this resource produces the given media type for the given method
*/
public boolean produces(Method method, String type) {
if (type.contains("*"))
return true;
Set<String> contentTypes = signature.responseTypes().get(method);
return contentTypes.contains(type);
}
/**
* Return the signature of this resource.
* @return the signature
*/
public ApiSignature signature() {
return signature;
}
//adapt to http servlet API delegating to standard implementation that throws a 405, resources ovverride in line with their signature
@Override
public void doHead(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
super.doHead(req, resp);
}
@Override
public void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
super.doGet(req, resp);
}
@Override
public void doPost(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
// TODO Auto-generated method stub
super.doPost(req, resp);
}
@Override
public void doPut(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
// TODO Auto-generated method stub
super.doPut(req, resp);
}
@Override
public void doDelete(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
// TODO Auto-generated method stub
super.doDelete(req, resp);
}
@Override
public void doOptions(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
// TODO Auto-generated method stub
super.doOptions(req, resp);
}
@Override
public void doTrace(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
// TODO Auto-generated method stub
super.doTrace(req, resp);
}
}

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package org.gcube.smartgears.extensions;
import static org.gcube.common.events.impl.Utils.*;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import org.gcube.smartgears.extensions.HttpExtension.Method;
public class ApiSignature {
private final String mapping;
private Set<Method> methods = new HashSet<Method>();
private Map<Method,Set<String>> requestTypes = new HashMap<Method, Set<String>>();
private Map<Method,Set<String>> responseTypes = new HashMap<Method, Set<String>>();
public ApiSignature(String mapping) {
this.mapping=mapping;
}
public ApiSignature with(ApiMethodSignature signature) {
notNull("method signature",signature);
this.methods.add(signature.method);
this.requestTypes.put(signature.method,signature.requestTypes);
this.responseTypes.put(signature.method,signature.responseTypes);
return this;
}
public String mapping() {
return mapping;
}
public Set<Method> methods() {
return methods;
}
public Map<Method,Set<String>> requestTypes() {
return requestTypes;
}
public Map<Method,Set<String>> responseTypes() {
return responseTypes;
}
}

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package org.gcube.smartgears.extensions;
import java.util.Set;
import javax.servlet.Servlet;
import org.gcube.smartgears.configuration.application.Exclude;
import org.gcube.smartgears.context.application.ApplicationContext;
/**
* A servlet that allows remote management of the application.
*
* @author Fabio Simeoni
*
*/
public interface ApplicationExtension extends Servlet {
/**
* Initialises the extensions with the context of the application.
* @param context the application context
* @throws Exception if the extension cannot be initialised
*/
void init(ApplicationContext context) throws Exception;
/**
* Returns the name of this extension.
* @return the name
*/
String name();
/**
* Returns the mapping of this extension.
* @return the mapping
*/
String mapping();
/**
* Returns the set of request paths that should be excluded from request management.
* @return the set of request paths that should be excluded from request management
*/
Set<Exclude> excludes();
}

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package org.gcube.smartgears.extensions;
import static org.gcube.smartgears.Constants.*;
import static org.gcube.smartgears.handlers.application.request.RequestError.*;
import static org.gcube.smartgears.utils.Utils.*;
import java.io.IOException;
import java.util.Collection;
import java.util.HashMap;
import java.util.LinkedHashSet;
import java.util.Map;
import java.util.Set;
import javax.servlet.ServletException;
import javax.servlet.ServletRequest;
import javax.servlet.ServletResponse;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.smartgears.configuration.application.Exclude;
import org.gcube.smartgears.context.application.ApplicationContext;
/**
* An {@link HttpExtension} that dispatches to one or more {@link ApiResource}s, handling the generic, HTTP-aspects
* aspects of their client interactions
*
* @author Fabio Simeoni
*
*/
public class HttpController extends HttpExtension {
private static final long serialVersionUID = 1L;
private final Map<String, ApiResource> resources = new HashMap<String, ApiResource>();
HttpController() {
}
/**
* Creates an instance with a given name and a given mapping.
*
* @param name the name
* @param mapping the mapping
*/
public HttpController(String name, String mapping) {
super(name, mapping);
}
/**
* Adds one ore more {@link ApiResource}s to this controller.
*
* @param resources the resources
*/
public void addResources(ApiResource... resources) {
notNull("API resources", resources);
for (ApiResource resource : resources)
this.resources.put(resource.mapping(), resource);
}
@Override
public void init(ApplicationContext context) throws Exception {
super.init(context);
for (ApiResource resource : resources.values())
resource.init(context);
}
@Override
public Set<Exclude> excludes() {
Set<Exclude> resourceExcludes = new LinkedHashSet<Exclude>();
for (ApiResource resource : resources.values())
resourceExcludes.addAll(resource.excludes());
return resourceExcludes;
}
// final because we dispatch to http servlet method inside, resources can use init(Context)
@Override
public final void service(ServletRequest req, ServletResponse resp) throws ServletException, IOException {
HttpServletRequest request = HttpServletRequest.class.cast(req);
HttpServletResponse response = HttpServletResponse.class.cast(resp);
ApiResource resource = resourceFor(request.getPathInfo());
checkMethod(resource, request, response);
checkContentTyperHeader(resource, request, response);
checkAcceptHeader(resource, request, response);
setContentTypeHeader(resource, request, response);
dispatch(resource, request, response);
}
// helpers
private void setContentTypeHeader(ApiResource resource, HttpServletRequest request, HttpServletResponse response) {
Method method = valueOf(request.getMethod());
Set<String> responseTypes = resource.signature().responseTypes().get(method);
if (responseTypes.isEmpty())
//overridden by resources that e.g. create something and return more specific codes
response.setStatus(HttpServletResponse.SC_NO_CONTENT);
else
if (responseTypes.size() == 1 && !response.containsHeader(content_type))
response.addHeader(content_type, responseTypes.iterator().next());
}
private ApiResource resourceFor(String path) {
if (path==null) {
path = "/";
}
else
// some tolerance for trailing slashes
if (path.length()>1 && path.endsWith("/"))
path = path.substring(0, path.length() - 1);
ApiResource resource = resources.get(path);
if (resource == null)
resource_notfound_error.fire();
return resource;
}
private void checkMethod(ApiResource resource, HttpServletRequest request, HttpServletResponse response) {
Method method = valueOf(request.getMethod());
if (!resource.supports(method)) {
response.addHeader(allow, toSingleString(resource.signature().methods()));
method_unsupported_error.fire("this resource does not support method " + method);
}
}
private void dispatch(ApiResource resource, HttpServletRequest request, HttpServletResponse response)
throws ServletException, IOException {
Method method = valueOf(request.getMethod());
// dispatches
switch (method) {
case HEAD:
resource.doHead(request, response);
break;
case GET:
resource.doGet(request, response);
break;
case POST:
resource.doPost(request, response);
break;
case PUT:
resource.doPut(request, response);
break;
case DELETE:
resource.doDelete(request, response);
break;
case OPTIONS:
resource.doOptions(request, response);
break;
case TRACE:
resource.doTrace(request, response);
}
}
private void checkContentTyperHeader(ApiResource resource, HttpServletRequest request, HttpServletResponse response) {
Method method = valueOf(request.getMethod());
// if request specifies a media-type, we check it against signature
// if it doesn't we let it pass and let the resource apply default or complain.
String requestTypes = request.getHeader(content_type);
if (requestTypes != null) {
String type = null;
for (String value : valuesOf(requestTypes))
if (resource.accepts(method, value)) {
type = value;
break;
}
if (type == null)
incoming_contenttype_unsupported_error.fire("this resource does not accept " + requestTypes);
}
}
private void checkAcceptHeader(ApiResource resource, HttpServletRequest request, HttpServletResponse response) {
Method method = valueOf(request.getMethod());
// check match on outgoing media type, if any
String responseType = request.getHeader(accept);
if (responseType != null) {
String type = null;
for (String value : valuesOf(responseType))
if (resource.produces(method, value)) {
type = value;
break;
}
if (type == null)
outgoing_contenttype_unsupported_error.fire("this resource cannot produce " + responseType);
}
}
private String toSingleString(Collection<? extends Object> values) {
StringBuilder builder = new StringBuilder();
for (Object value : values)
builder.append(value).append(",");
String concat = builder.toString();
return concat.substring(0, concat.length() - 1);
}
private String[] valuesOf(String header) {
return header.split(",");
}
private Method valueOf(String method) {
try {
return Method.valueOf(method);
} catch (Exception e) {
throw method_unsupported_error.toException("unsupported method " + method);
}
}
}

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package org.gcube.smartgears.extensions;
import static org.gcube.common.events.impl.Utils.*;
import java.util.HashSet;
import java.util.Set;
import javax.servlet.http.HttpServlet;
import javax.xml.bind.annotation.XmlAttribute;
import org.gcube.common.validator.annotations.NotEmpty;
import org.gcube.smartgears.configuration.application.Exclude;
import org.gcube.smartgears.context.application.ApplicationContext;
/**
* An {@link ApplicationExtension} that implements the {@link HttpServlet} interface
*
* @author Fabio Simeoni
*
*/
public abstract class HttpExtension extends HttpServlet implements ApplicationExtension {
private static final long serialVersionUID = 1L;
/**
* Enumeration of HTTP methods.
*
*/
public static enum Method {
GET, PUT, POST, HEAD, DELETE, OPTIONS, TRACE
}
@XmlAttribute @NotEmpty
private String name;
@XmlAttribute @NotEmpty
private String mapping;
private ApplicationContext context;
protected HttpExtension() {}
public HttpExtension(String name, String mapping) {
valid("extension name",name);
valid("extension mapping",name);
name(name);
mapping(mapping);
}
//extensions use init(context) instead
public final void init() throws javax.servlet.ServletException {
};
@Override
public void init(ApplicationContext context) throws Exception {
this.context=context;
}
@Override
public Set<Exclude> excludes() {
return new HashSet<Exclude>(); //all managed by default
}
protected ApplicationContext context() {
return context;
}
@Override
public String name() {
return name;
}
public void name(String name) {
this.name = name;
}
@Override
public String mapping() {
return mapping;
}
public void mapping(String mapping) {
this.mapping = mapping;
}
}

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package org.gcube.smartgears.extensions;
import java.io.IOException;
import javax.servlet.Filter;
import javax.servlet.FilterChain;
import javax.servlet.FilterConfig;
import javax.servlet.ServletException;
import javax.servlet.ServletRequest;
import javax.servlet.ServletResponse;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.smartgears.handlers.application.request.RequestException;
import org.gcube.smartgears.utils.Utils;
/**
* A {@link Filter} that maps {@link RequestException}s onto error responses.
*
*
* @author Fabio Simeoni
*
*/
public class RequestExceptionBarrier implements Filter {
@Override
public void init(FilterConfig filterConfig) throws ServletException {
}
@Override
public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException {
try {
chain.doFilter(request, response);
} catch (Throwable t) {
Utils.handleError(HttpServletRequest.class.cast(request), HttpServletResponse.class.cast(response), t);
}
}
@Override
public void destroy() {
}
}

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package org.gcube.smartgears.extensions.resource;
import static org.gcube.smartgears.Constants.application_xml;
import static org.gcube.smartgears.extensions.HttpExtension.Method.GET;
import java.io.IOException;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.common.resources.gcore.Resources;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.configuration.application.BridgedApplicationConfiguration;
import org.gcube.smartgears.extensions.ApiResource;
import org.gcube.smartgears.extensions.ApiSignature;
/**
* An {@link ApiResource} of {@link RemoteResource} at {@link #mapping}.
*
* @author Fabio Simeoni
*
*/
public class ConfigurationResource extends ApiResource {
private static final long serialVersionUID = 1L;
public static final String mapping = "/configuration";
private static final ApiSignature signature = handles(mapping).with(method(GET).produces(application_xml));
ConfigurationResource() {
super(signature);
}
@Override
public void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
ApplicationConfiguration config = BridgedApplicationConfiguration.class.cast(context().configuration()).inner();
Resources.marshal(config,resp.getWriter());
}
}

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package org.gcube.smartgears.extensions.resource;
import static org.gcube.smartgears.Constants.application_xhtml;
import static org.gcube.smartgears.Constants.frontpage_file_path;
import static org.gcube.smartgears.extensions.HttpExtension.Method.GET;
import static org.gcube.smartgears.handlers.application.request.RequestError.application_error;
import static org.gcube.smartgears.provider.ProviderFactory.provider;
import static org.gcube.smartgears.utils.Utils.closeSafely;
import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.common.scope.impl.ScopeBean;
import org.gcube.smartgears.extensions.ApiResource;
import org.gcube.smartgears.extensions.ApiSignature;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* An {@link ApiResource} of {@link RemoteResource} at {@link #mapping}.
*
* @author Fabio Simeoni
*
*/
public class FrontPageResource extends ApiResource {
// the variable replacement pattern
private static Pattern pattern = Pattern.compile("\\$\\{(.+?)\\}");
// log on behalf of extension
private static final Logger log = LoggerFactory.getLogger(RemoteResource.class);
private static final long serialVersionUID = 1L;
public static final String mapping = "/";
private static final ApiSignature signature = handles(mapping).with(method(GET).produces(application_xhtml));
FrontPageResource() {
super(signature);
}
@Override
public void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
InputStream page = getClass().getResourceAsStream(frontpage_file_path);
if (page == null) {
log.error("invalid distribution: missing {}", frontpage_file_path);
application_error.fire("invalid distribution: missing " + frontpage_file_path);
}
Map<String, String> values = values();
BufferedReader reader = null;
try {
String line = null;
reader = new BufferedReader(new InputStreamReader(page));
while ((line = reader.readLine()) != null)
resp.getWriter().write(interpolate(line, values));
} catch (Exception e) {
application_error.fire("could not read " + frontpage_file_path, e);
} finally {
closeSafely(reader);
}
}
private Map<String, String> values() {
Map<String, String> values = new HashMap<String, String>();
values.put("profile_link", ProfileResource.mapping.substring(1,ProfileResource.mapping.length()));
values.put("config_link", ConfigurationResource.mapping.substring(1,ConfigurationResource.mapping.length()));
values.put("name", context().name());
values.put("version", context().configuration().version());
String infrastructure = context().container().configuration().infrastructure();
StringBuilder voValue = new StringBuilder();
Collection<String> scopes = context().profile(GCoreEndpoint.class).scopes().asCollection();
Set<String> vos = new HashSet<String>();
//pre-process
for (String scope : scopes) {
ScopeBean bean = new ScopeBean(scope);
switch (bean.type()) {
case INFRASTRUCTURE:
infrastructure = bean.name();
break;
case VO:
vos.add(bean.name());
break;
case VRE:
vos.add(bean.enclosingScope().name());
infrastructure=bean.enclosingScope().enclosingScope().name();
}
}
//build vo value
int i = 0;
int max = vos.size()-1;
for (String vo : vos) {
String voPrefix = i == 0 ? "" : (i==max?" and ":", ");
voValue.append(voPrefix+"<em>" + vo + "</em>");
i++;
}
values.put("infra", infrastructure);
values.put("vos", voValue.toString());
values.put("status", context().lifecycle().state().toString());
values.put("smartgears-version", provider().smartgearsConfiguration().version());
return values;
}
public static String interpolate(String text, Map<String, String> replacements) {
Matcher matcher = pattern.matcher(text);
StringBuffer buffer = new StringBuffer();
while (matcher.find()) {
String replacement = replacements.get(matcher.group(1));
if (replacement != null) {
matcher.appendReplacement(buffer, ""); // safer in case replacements include some of the variable
// characters
buffer.append(replacement);
}
}
matcher.appendTail(buffer);
return buffer.toString();
}
}

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package org.gcube.smartgears.extensions.resource;
import static org.gcube.smartgears.Constants.application_xml;
import static org.gcube.smartgears.extensions.HttpExtension.Method.GET;
import static org.gcube.smartgears.extensions.HttpExtension.Method.POST;
import static org.gcube.smartgears.handlers.application.request.RequestError.illegal_state_error;
import static org.gcube.smartgears.handlers.application.request.RequestError.invalid_request_error;
import java.io.IOException;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlValue;
import org.gcube.common.resources.gcore.Resources;
import org.gcube.smartgears.extensions.ApiResource;
import org.gcube.smartgears.extensions.ApiSignature;
import org.gcube.smartgears.lifecycle.application.ApplicationState;
/**
* An {@link ApiResource} of {@link RemoteResource} at {@link #mapping}.
*
* @author Fabio Simeoni
*
*/
public class LifecycleResource extends ApiResource {
private static final long serialVersionUID = 1L;
public static final String mapping = "/lifecyle";
private static final ApiSignature signature = handles(mapping).with(method(GET).produces(application_xml)).with(
method(POST).accepts(application_xml));
LifecycleResource() {
super(signature);
}
@Override
public boolean supports(Method method) {
return method == GET || method == POST;
}
@Override
public void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
try {
Resources.marshal(new State(context().lifecycle().state()), resp.getWriter());
}
catch(Exception e) {
invalid_request_error.fire("cannot parse request body",e);
}
}
@Override
public void doPost(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
State wrapper = Resources.unmarshal(State.class, req.getReader());
String value = wrapper.value;
if (value == null || value.isEmpty())
invalid_request_error.fire("missing state in request body");
ApplicationState state = null;
try {
state = ApplicationState.valueOf(value);
}
catch(Exception e) {
invalid_request_error.fire(value+" is an unkown resource state",e);
}
try {
context().lifecycle().moveTo(state);
}
catch(Exception e) {
illegal_state_error.fire("invalid state transition for this resource"+value, e);
}
}
// helper classes
@XmlRootElement(name="state")
public static class State {
@XmlValue
public String value;
State() {
}
public State(ApplicationState state) {
this.value=state.name();
}
}
}

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package org.gcube.smartgears.extensions.resource;
import static org.gcube.smartgears.Constants.application_xml;
import static org.gcube.smartgears.extensions.HttpExtension.Method.GET;
import java.io.IOException;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.common.resources.gcore.Resources;
import org.gcube.smartgears.extensions.ApiResource;
import org.gcube.smartgears.extensions.ApiSignature;
/**
* An {@link ApiResource} of {@link RemoteResource} at {@link #mapping}.
*
* @author Fabio Simeoni
*
*/
public class ProfileResource extends ApiResource {
private static final long serialVersionUID = 1L;
public static final String mapping = "/profile";
private static final ApiSignature signature = handles(mapping).with(method(GET).produces(application_xml));
ProfileResource() {
super(signature);
}
@Override
public void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
Resources.marshal(context().profile(GCoreEndpoint.class),resp.getWriter());
}
}

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package org.gcube.smartgears.extensions.resource;
import static org.gcube.smartgears.Constants.*;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.smartgears.Constants;
import org.gcube.smartgears.extensions.ApiResource;
import org.gcube.smartgears.extensions.HttpController;
/**
* An {@link HttpController} for remote management of the application.
*
* @author Fabio Simeoni
*
*/
@XmlRootElement(name = remote_management)
public class RemoteResource extends HttpController {
private static final String default_mapping = Constants.root_mapping+"/*";
private static final long serialVersionUID = 1L;
/**
* Creates an instance with its {@link ApiResource}s.
*/
public RemoteResource() {
super(remote_management, default_mapping);
addResources(new FrontPageResource(), new ConfigurationResource(), new ProfileResource(),
new LifecycleResource());
}
@Override
public String toString() {
return remote_management;
}
}

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package org.gcube.smartgears.handlers;
/**
* Partial implementation of {@link Handler}.
*
* @author Fabio Simeoni
*
*
*/
public abstract class AbstractHandler {
@Override
public String toString() {
return getClass().getSimpleName();
}
//so far, largely a placeholder for future cross-handler behaviour
}

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package org.gcube.smartgears.handlers;
/**
* An event related to a given context.
*
* @author Fabio Simeoni
*
* @param <C> the context type
*/
public abstract class Event<C> {
private final C context;
/**
* Creates an instance with the context of the container.
* @param context the context
*/
public Event(C context) {
this.context=context;
}
/**
* Returns the context of the container.
* @return the context
*/
public C context() {
return context;
}
@Override
public String toString() {
return getClass().getSimpleName();
}
}

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package org.gcube.smartgears.handlers;
/**
* Handles events.
*
* @author Fabio Simeoni
*
* @param <E> the event type
*/
public interface Handler<E> {
/**
* Processes a given event.
*
* @param e the event
*/
void onEvent(E event);
}

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package org.gcube.smartgears.handlers;
import java.util.ArrayList;
import java.util.List;
/**
* An ordered list {@link Handler}s that handle related events.
*
* @author Fabio Simeoni
*
* @param <E> the type of events
* @param <H> the type of handlers
*
*
*/
public abstract class Pipeline<E,H extends Handler<E>> {
//private static Logger log = LoggerFactory.getLogger(Pipeline.class);
private final List<H> handlers;
private int cursor = 0;
/**
* Creates an instance with a given list of handlers.
* <p>
* Modification to the input list do not affect the pipeline.
*
* @param handlers the handlers
*/
public Pipeline(List<H> handlers) {
this.handlers = new ArrayList<H>(handlers); // defensive copy
}
/**
* Returns the handlers in this pipeline.
* <p>
* Modification to the input list do not affect the pipeline.
*
* @return the handlers
*/
public List<H> handlers() {
return new ArrayList<H>(handlers); // defensive copy
}
/**
* Forwards an event through the pipeline.
*
* @param event the event
*/
public void forward(E event) {
if (cursor >= handlers.size()) {
reset();
return;
}
H handler = handlers.get(cursor);
cursor++;
//log.trace("forwarding {} to {}", event, handler);
try {
handler.onEvent(event);
}
catch(RuntimeException e) {
reset();
throw e;
}
forward(event); //make sure it's the last thing we do, or it will keep acting as recursion retracts
}
private void reset() {
cursor=0;
}
}

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package org.gcube.smartgears.handlers;
/**
* Profile lifetime events for container and application.
*
* @author Fabio Simeoni
*
*/
public class ProfileEvents {
/**
* The event that signals the publication of the profile.
*/
public static final String published ="published";
/**
* The event that signals a change to the profile.
*/
public static final String changed ="changed";
public static final String addToContext = "addToContext";
public static final String removeFromContext = "removeFromContext";
}

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package org.gcube.smartgears.handlers.application;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.handlers.Event;
/**
* An {@link Event} that occurs in the lifetime of the application.
* @author Fabio Simeoni
*
* @param <T> the type of handler that handles these events
*
*/
public abstract class ApplicationEvent<T extends ApplicationHandler<T>> extends Event<ApplicationContext> {
/**
* Creates an instance with a given application context.
* @param context the context
*/
ApplicationEvent(ApplicationContext context) {
super(context);
}
}

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package org.gcube.smartgears.handlers.application;
import org.gcube.smartgears.handlers.Handler;
/**
* A {@link Handler} of {@link ApplicationEvent}s.
*
* @author Fabio Simeoni
*
* @param <T> the self type of the handler.
*
* @see ApplicationEvent
*/
public interface ApplicationHandler<T extends ApplicationHandler<T>> extends Handler<ApplicationEvent<T>> {
}

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package org.gcube.smartgears.handlers.application;
import org.gcube.smartgears.context.application.ApplicationContext;
/**
* An {@link ApplicationEvent} that occurs when the application starts or stops.
* @author Fabio Simeoni
*
*/
public abstract class ApplicationLifecycleEvent extends ApplicationEvent<ApplicationLifecycleHandler> {
/**
* An {@link ApplicationEvent} that occurs when the application starts.
*/
public static class Start extends ApplicationLifecycleEvent {
/**
* Creates an instance for a given {@link ApplicationContext}.
* @param context the context
*/
public Start(ApplicationContext context) {
super(context);
}
}
/**
* An {@link ApplicationEvent} that occurs when the application stops.
*/
public static class Stop extends ApplicationLifecycleEvent {
/**
* Creates an instance for a given {@link ApplicationContext}.
* @param context the context
*/
public Stop(ApplicationContext context) {
super(context);
}
}
/**
* Creates an instance for a given {@link ApplicationContext}.
* @param context the context
*/
ApplicationLifecycleEvent(ApplicationContext context) {
super(context);
}
}

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package org.gcube.smartgears.handlers.application;
import java.util.logging.Handler;
import org.gcube.smartgears.handlers.AbstractHandler;
/**
* A {@link Handler} of {@link ApplicationLifecycleEvent}s.
* <p>
* The handler participates in a {@link ApplicationPipeline} of other handlers registered for notification of the same events.
* After processing the event, it may or may not propagate the event to the handlers further down in the {@link ApplicationPipeline}
* {@link ApplicationPipeline#forward(ApplicationEvent)}.
* @author Fabio Simeoni
*
* @see ApplicationLifecycleEvent
* @see ApplicationPipeline
*/
public abstract class ApplicationLifecycleHandler extends AbstractHandler implements ApplicationHandler<ApplicationLifecycleHandler> {
/**
* Invoked when the container starts a managed app.
* @param pipeline the pipeline in which this handler is registered
* @param e the event
*/
public void onStart(ApplicationLifecycleEvent.Start e) {
}
/**
* Invoked when the container stops a managed app.
* @param pipeline the pipeline in which this handler is registered
* @param e the stop event
*/
public void onStop(ApplicationLifecycleEvent.Stop e) {
}
@Override
public void onEvent(ApplicationEvent<ApplicationLifecycleHandler> e) {
if (e instanceof ApplicationLifecycleEvent.Start)
onStart(ApplicationLifecycleEvent.Start.class.cast(e));
else
if (e instanceof ApplicationLifecycleEvent.Stop)
onStop(ApplicationLifecycleEvent.Stop.class.cast(e));
}
}

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package org.gcube.smartgears.handlers.application;
import java.util.Collections;
import java.util.List;
import org.gcube.smartgears.handlers.Pipeline;
/**
* A {@link Pipeline} of {@link ApplicationHandler}s.
*
* @author Fabio Simeoni
*
* @param <H> the type of the handlers
*
*
*/
public class ApplicationPipeline<H extends ApplicationHandler<H>> extends Pipeline<ApplicationEvent<H>,H> {
/**
* Creates an instance with a given list of handlers.
* <p>
* Modification to the input list do not affect the pipeline.
*
* @param handlers the handlers
*/
public ApplicationPipeline(List<H> handlers) {
super(handlers);
}
/**
* Returns a pipeline with the same handlers as this pipeline but in reverse order.
* @return the reversed pipeline
*/
public ApplicationPipeline<H> reverse() {
List<H> handlers = handlers(); // it's a copy, we're not changing this pipeline
Collections.reverse(handlers);
return new ApplicationPipeline<H>(handlers);
}
}

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package org.gcube.smartgears.handlers.application;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.smartgears.context.application.ApplicationContext;
/**
* An {@link ApplicationEvent} that occurs when an application receives a request.
*
* @author Fabio Simeoni
*
*/
public class RequestEvent extends ApplicationEvent<RequestHandler> {
private final String servlet;
private final HttpServletRequest request;
private final HttpServletResponse response;
/**
* Creates an instance with the application context, the client request, and the name of the target servlet.
*
* @param context the context of the application
* @param servlet the name of the target servlet
* @param request the client request
*/
public RequestEvent(String servlet,ApplicationContext context, HttpServletRequest request, HttpServletResponse response) {
super(context);
this.request = request;
this.response=response;
this.servlet = servlet;
}
/**
* Returns the name of the target servlet.
*
* @return the name of the servlet.
*/
public String servlet() {
return servlet;
}
public String uri() {
String query = request().getQueryString();
return query==null?request().getRequestURI():request().getRequestURI()+"?"+query;
}
/**
* Returns the client request.
*
* @return the request
*/
public HttpServletRequest request() {
return request;
}
/**
* Returns the response.
*
* @return the response
*/
public HttpServletResponse response() {
return response;
}
@Override
public String toString() {
return getClass().getSimpleName() + "[req=" + request().getRemoteHost() + ",resp="
+ response.toString().substring(0, 12) + "]";
}
}

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package org.gcube.smartgears.handlers.application;
import java.util.logging.Handler;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.handlers.AbstractHandler;
/**
* A {@link Handler} of {@link RequestEvent}s and {@link ResponseEvent}s.
* <p>
* The handler participates in a {@link ApplicationPipeline} of other handlers registered for notification of the same events.
* After processing the event, it may or may not propagate the event to the handlers further down in the
* {@link ApplicationPipeline} {@link ApplicationPipeline#forward(ApplicationEvent)}.
*
* @author Fabio Simeoni
*
* @see RequestEvent
* @see ResponseEvent
* @see ApplicationPipeline
*/
public abstract class RequestHandler extends AbstractHandler implements ApplicationHandler<RequestHandler> {
abstract public String getName();
/**
* Initialises the handler.
*
* @param ctx the servlet context of the managed app.
*/
public void start(ApplicationContext ctx) {
}
/**
* Invoked when the container receives a request for a servlet of a managed app.
*
* @param pipeline the pipeline in which this handler is registered
* @param e the event
*/
public void handleRequest(RequestEvent e) {
}
/**
* Invoked when a servlet of a managed app has produced a response to a request.
*
* @param pipeline the pipeline in which this handler is registered
* @param e the event
*/
public void handleResponse(ResponseEvent e) {
}
@Override
public void onEvent(ApplicationEvent<RequestHandler> e) {
// mind the order here, ResponseEvent<RequestEvent so must be checked first
if (e instanceof ResponseEvent)
handleResponse(ResponseEvent.class.cast(e));
else if (e instanceof RequestEvent)
handleRequest(RequestEvent.class.cast(e));
}
/**
* Terminates the handler.
*/
public void stop() {
}
}

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package org.gcube.smartgears.handlers.application;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.smartgears.context.application.ApplicationContext;
/**
* A {@link ApplicationEvent} that occurs when the application returns a response to a given request.
* @author Fabio Simeoni
*
*/
public class ResponseEvent extends RequestEvent {
/**
* Creates an instance with the name of the target servlet, the context of the application, the client request, and the application response.
*
* @param servlet the name of the servlet
* @param context the context of the application
* @param request the request
* @param response the response
*/
public ResponseEvent(String servlet, ApplicationContext context, HttpServletRequest request, HttpServletResponse response) {
super(servlet, context, request, response);
}
}

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package org.gcube.smartgears.handlers.application.lifecycle;
import java.net.URI;
import java.util.Arrays;
import java.util.Calendar;
import java.util.List;
import javax.servlet.ServletRegistration;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.common.resources.gcore.HostingNode;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.context.application.ApplicationContext;
public class ProfileBuilder {
private static List<String> servletExcludes = Arrays.asList("default","jsp");
private ApplicationContext context;
public ProfileBuilder(ApplicationContext context) {
this.context = context;
}
public void fill(GCoreEndpoint endpoint) {
ApplicationConfiguration configuration = context.configuration();
ContainerConfiguration container = context.container().configuration();
endpoint.profile()
.description(configuration.description())
.serviceName(configuration.name())
.serviceClass(configuration.serviceClass())
.version(configuration.version())
.serviceId(configuration.name() + configuration.serviceClass() + configuration.version())
.ghnId(context.container().profile(HostingNode.class).id());
endpoint.profile().newDeploymentData()
.activationTime(Calendar.getInstance())
.status((context.lifecycle().state().remoteForm()));
endpoint.profile().endpoints().clear();
String baseAddress;
if (configuration.proxied()){
String protocol = container.proxyAddress().secure()? "https://": "http://";
int port = container.proxyAddress().port();
baseAddress=String.format("%s%s:%d%s", protocol , container.proxyAddress().hostname(), port,context.application().getContextPath());
} else {
String protocol = configuration.secure()? "https://": "http://";
int port = configuration.secure()?container.securePort(): container.port();
baseAddress=String.format("%s%s:%d%s", protocol , container.hostname(), port,context.application().getContextPath());
}
for (ServletRegistration servlet : context.application().getServletRegistrations().values())
if (!servletExcludes.contains(servlet.getName()))
for (String mapping : servlet.getMappings()) {
String address = baseAddress+(mapping.endsWith("*")?mapping.substring(0,mapping.length()-2):mapping);
endpoint.profile().endpoints().add().nameAndAddress(servlet.getName(),URI.create(address));
}
}
}

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package org.gcube.smartgears.handlers.application.lifecycle;
import static org.gcube.common.events.Observes.Kind.resilient;
import static org.gcube.smartgears.Constants.profile_management;
import static org.gcube.smartgears.Constants.profile_property;
import static org.gcube.smartgears.handlers.ProfileEvents.addToContext;
import static org.gcube.smartgears.handlers.ProfileEvents.changed;
import static org.gcube.smartgears.handlers.ProfileEvents.published;
import static org.gcube.smartgears.handlers.ProfileEvents.removeFromContext;
import static org.gcube.smartgears.lifecycle.application.ApplicationLifecycle.activation;
import static org.gcube.smartgears.lifecycle.application.ApplicationLifecycle.failure;
import static org.gcube.smartgears.lifecycle.application.ApplicationLifecycle.stop;
import static org.gcube.smartgears.lifecycle.application.ApplicationState.failed;
import java.util.Collections;
import java.util.concurrent.ScheduledFuture;
import java.util.concurrent.TimeUnit;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.events.Observes;
import org.gcube.common.events.Observes.Kind;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.smartgears.Constants;
import org.gcube.smartgears.context.Property;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.handlers.application.ApplicationLifecycleEvent;
import org.gcube.smartgears.handlers.application.ApplicationLifecycleHandler;
import org.gcube.smartgears.lifecycle.application.ApplicationLifecycle;
import org.gcube.smartgears.lifecycle.application.ApplicationState;
import org.gcube.smartgears.lifecycle.container.ContainerLifecycle;
import org.gcube.smartgears.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
*
* Manages the resource profile of the application.
* <p>
*
* The manager:
*
* <ul>
* <li>creates the profile when the application starts for the first time;
* <li>loads the profile when the application restarts;
* <li>publishes the profile when the application becomes active, and at any
* lifecycle change thereafter;
* <li>stores the profile locally after each publication;
* </ul>
*
* @author Fabio Simeoni
* @see ProfileBuilder
* @see ProfilePublisher
*/
@XmlRootElement(name = profile_management)
public class ProfileManager extends ApplicationLifecycleHandler {
Logger log = LoggerFactory.getLogger(ProfileManager.class);
private ApplicationContext context;
private ProfileBuilder builder;
private ProfilePublisher publisher;
private ScheduledFuture<?> periodicUpdates;
@Override
public void onStart(ApplicationLifecycleEvent.Start e) {
context = e.context();
builder = new ProfileBuilder(context);
activated();
schedulePeriodicUpdates();
// note we don't fire profile events, but wait for the final startup
// outcome which
// will result in a state change. only then we publish and store the
// profile
// this avoids the redundancy and performance penalty of storing and
// publishing multiple
// times in rapid succession (which would be correct). Revise if proves
// problematic in corner
// cases.
}
private void activated(){
GCoreEndpoint profile = loadOrCreateProfile();
share(profile);
publisher = new ProfilePublisher(context);
registerObservers();
}
// helpers
private void registerObservers() {
context.events().subscribe(new Object() {
@Observes({ activation, stop, failure })
void onChanged(ApplicationLifecycle lc) {
GCoreEndpoint profile = context.profile(GCoreEndpoint.class);
profile.profile().deploymentData().status(lc.state().remoteForm());
log.debug("moving app {} to {}",context.name(), lc.state().remoteForm());
// since we do not know the observers, they will deal with
// failures and their consequences
// any that comes back will be logged in this event thread
context.events().fire(profile, changed);
}
@Observes(value = published)
void shareAfterPublish(GCoreEndpoint profile) {
share(profile); // publish may produce a new profile instance
}
@Observes(value = changed, kind = Kind.safe)
void publishAfterChange(GCoreEndpoint profile) {
boolean firstPublication = profile.scopes().isEmpty();
//if we've failed before first publication do not try to publish
//(we may well have failed there)
try {
if (firstPublication) {
if (context.lifecycle().state()!= failed)
publishFirstTime(profile);
}
else{
log.debug("update app {} profile",context.name());
publisher.update(); // if successful, triggers share.
}
}
catch (Exception e) {
log.error("cannot publish "+context.name()+" (see details)", e);
// since we've failed no published event is fired and profile
// will not be stored.
// we do it manually to ensure we leave some local trace of the
// changed profile.
//TODO: CHECK --- store(profile);
}
}
@Observes(value = addToContext)
void addTo(String token) {
try {
log.trace("publishing application with new token");
publisher.addTo(Collections.singleton(token));
publisher.update();
}catch (Exception e) {
log.error("cannot add token {} (see details)",token, e);
// since we've failed no published event is fired and profile
// will not be stored.
// we do it manually to ensure we leave some local trace of the
// changed profile.
//TODO: CHECK --- store(profile);
}
}
@Observes(value = removeFromContext)
void removeFrom(String token) {
try {
log.trace("unpublishing application with token");
publisher.removeFrom(Collections.singleton(token));
publisher.update();
}catch (Exception e) {
log.error("cannot remove token {} (see details)",token, e);
// since we've failed no published event is fired and profile
// will not be stored.
// we do it manually to ensure we leave some local trace of the
// changed profile.
//TODO: CHECK --- store(profile);
}
}
});
}
private void share(GCoreEndpoint profile) {
log.trace("sharing profile for {}", context.name());
context.properties().add(new Property(profile_property, profile));
}
private void publishFirstTime(GCoreEndpoint profile) {
try {
publisher.addToAll();
} catch (Exception e) {
log.warn("publishing failed",e);
}
}
private GCoreEndpoint loadOrCreateProfile() {
return create();
}
private GCoreEndpoint create() {
log.info("creating profile for {}", context.name());
try {
GCoreEndpoint profile = new GCoreEndpoint();
profile.setId(context.id());
builder.fill(profile);
return profile;
} catch (RuntimeException e) {
// this is a critical startup failure: it will fail the application
throw new RuntimeException("cannot create profile for " + context.name(), e);
}
}
private void schedulePeriodicUpdates() {
// register to cancel updates
context.events().subscribe(
new Object() {
// we register it in response to lifecycle events so that we can stop and resume along with application
@Observes(value = { activation }, kind = resilient)
synchronized void restartPeriodicUpdates(ApplicationLifecycle lc) {
//already running
if (periodicUpdates!=null)
return;
if (lc.state()==ApplicationState.active)
log.info("scheduling periodic updates of application {} profile", context.name());
else
log.info("resuming periodic updates of application {} profile", context.name());
final Runnable updateTask = new Runnable() {
public void run() {
GCoreEndpoint profile = context.profile(GCoreEndpoint.class);
//if handling of event generates failures these will be reported
//for resilience we do not fail the application
log.trace("firing change event on application {} profile", context.name());
context.events().fire(profile,changed);
}
};
periodicUpdates = Utils.scheduledServicePool.scheduleAtFixedRate(updateTask, Constants.application_republish_frequency_in_minutes, Constants.application_republish_frequency_in_minutes , TimeUnit.MINUTES);
}
@Observes(value = { stop, failure }, kind = resilient)
synchronized void cancelPeriodicUpdates(ContainerLifecycle ignore) {
if (periodicUpdates != null){
log.trace("stopping periodic updates of application {} profile", context.name());
try {
periodicUpdates.cancel(true);
periodicUpdates=null;
}
catch(Exception e) {
log.warn("could not stop periodic updates of application {} profile", context.name(),e);
}
}
}
});
}
@Override
public String toString() {
return profile_management;
}
}

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package org.gcube.smartgears.handlers.application.lifecycle;
import static org.gcube.smartgears.handlers.ProfileEvents.published;
import static org.gcube.smartgears.utils.Utils.notEmpty;
import static org.gcube.smartgears.utils.Utils.rethrowUnchecked;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import org.gcube.common.authorization.client.proxy.AuthorizationProxy;
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.informationsystem.publisher.ScopedPublisher;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.provider.ProviderFactory;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Publishes the current resource profile of the application.
* <p>
*Distinguishes publication in new scopes ({@link #addTo(List)} from publication updates in existing scopes ({@link #update()}.
*
*
* @author Fabio Simeoni
*
*/
public class ProfilePublisher {
private static final Logger log = LoggerFactory.getLogger(ProfilePublisher.class);
//the underlying IS publisher
private final ScopedPublisher publisher;
private final ApplicationContext context;
private AuthorizationProxy authProxy ;
/**
* Creates an instance for a given application.
* @param context the context of the application
*/
public ProfilePublisher(ApplicationContext context) {
this.context = context;
this.publisher=ProviderFactory.provider().publisherFor(context);
this.authProxy = ProviderFactory.provider().authorizationProxy();
}
/**
* Adds for the first time the current resource profile of the application in one or more scopes.
* @param scopes the scopes
*/
public void addTo(Collection<String> tokens) {
notEmpty("tokens",tokens);
GCoreEndpoint profile = context.profile(GCoreEndpoint.class);
/* TODO: reintroduce it when scope will be removed
//TODO: remove when move to new IS
Collection<String> retainedContexts = new ArrayList<String>(context.container().configuration().allowedContexts());
retainedContexts.removeAll(profile.scopes().asCollection());
profile.scopes().asCollection().addAll(retainedContexts);
String previousToken = SecurityTokenProvider.instance.get();
try {
for (String token: tokens){
log.info("creating profile with token {}", token);
SecurityTokenProvider.instance.set(token);
profile = publisher.create(profile);
SecurityTokenProvider.instance.reset();
}
}catch (Exception e) {
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
}
*/
ClassLoader contextCL = Thread.currentThread().getContextClassLoader();
String previousToken = SecurityTokenProvider.instance.get();
try{//This classloader set is needed for the jaxb context
if (previousToken==null)
SecurityTokenProvider.instance.set((String)tokens.toArray()[0]);
Thread.currentThread().setContextClassLoader(ProfilePublisher.class.getClassLoader());
profile = publisher.create(profile, resolveScopesFromTokens(tokens));
} catch (Exception e) {
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
Thread.currentThread().setContextClassLoader(contextCL);
}
sharePublished(profile);
}
public void addToAll() {
this.addTo(context.configuration().startTokens());
}
public void update() {
GCoreEndpoint profile = context.profile(GCoreEndpoint.class);
/* TODO: reintroduce it when scope will be removed
String previousToken = SecurityTokenProvider.instance.get();
try {
for (String token: context.configuration().startTokens()){
SecurityTokenProvider.instance.set(token);
profile = publisher.update(profile);
SecurityTokenProvider.instance.reset();
}
}
catch (Exception e) {
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
}
*/
ClassLoader contextCL = Thread.currentThread().getContextClassLoader();
String previousToken = SecurityTokenProvider.instance.get();
try{//This classloader set is needed for the jaxb context
if (previousToken==null)
SecurityTokenProvider.instance.set((String)context.configuration().startTokens().toArray()[0]);
Thread.currentThread().setContextClassLoader(ProfilePublisher.class.getClassLoader());
profile = publisher.update(profile);
} catch (Exception e) {
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
Thread.currentThread().setContextClassLoader(contextCL);
}
sharePublished(profile);
}
/**
* Removes the application from one or more scopes.
* @param scopes the scopes
*/
public void removeFrom(Collection<String> tokens) {
GCoreEndpoint profile = context.profile(GCoreEndpoint.class);
/* TODO: reintroduce it when scope will be removed
String previousToken = SecurityTokenProvider.instance.get();
try {
for (String token: tokens){
SecurityTokenProvider.instance.set(token);
profile = publisher.remove(profile);
SecurityTokenProvider.instance.reset();
}
}
catch (Exception e) {
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
}
*/
ClassLoader contextCL = Thread.currentThread().getContextClassLoader();
String previousToken = SecurityTokenProvider.instance.get();
try{//This classloader set is needed for the jaxb context
if (previousToken==null)
SecurityTokenProvider.instance.set((String)tokens.toArray()[0]);
Thread.currentThread().setContextClassLoader(ProfilePublisher.class.getClassLoader());
profile = publisher.remove(profile, resolveScopesFromTokens(tokens));
} catch (Exception e) {
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
Thread.currentThread().setContextClassLoader(contextCL);
}
log.debug("after remove application profile contains scopes {}",profile.scopes().asCollection());
sharePublished(profile);
}
private void sharePublished(GCoreEndpoint profile) {
context.events().fire(profile,published);
}
private List<String> resolveScopesFromTokens(Collection<String> tokens){
List<String> scopes = new ArrayList<String>(tokens.size());
for (String token: tokens)
try{
scopes.add(this.authProxy.get(token).getContext());
}catch (Exception e) {
log.warn("error retrieving token {} , it should never happen",token);
}
return scopes;
}
}

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package org.gcube.smartgears.handlers.application.request;
import static org.gcube.smartgears.Constants.called_method_header;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.accounting.datamodel.UsageRecord.OperationResult;
import org.gcube.accounting.datamodel.usagerecords.ServiceUsageRecord;
import org.gcube.accounting.persistence.AccountingPersistence;
import org.gcube.accounting.persistence.AccountingPersistenceFactory;
import org.gcube.common.authorization.library.provider.AuthorizationProvider;
import org.gcube.common.authorization.library.provider.CalledMethodProvider;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.smartgears.Constants;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.handlers.application.RequestEvent;
import org.gcube.smartgears.handlers.application.RequestHandler;
import org.gcube.smartgears.handlers.application.ResponseEvent;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@XmlRootElement(name = Constants.request_accounting)
public class RequestAccounting extends RequestHandler {
private static Logger log = LoggerFactory.getLogger(RequestAccounting.class);
private static ThreadLocal<Long> startCallThreadLocal = new ThreadLocal<Long>();
@Override
public String getName() {
return Constants.request_accounting;
}
@Override
public void handleRequest(RequestEvent e) {
ApplicationContext context = e.context();
String calledMethod = e.request().getHeader(called_method_header);
if (calledMethod==null){
calledMethod = e.request().getRequestURI().substring(e.request().getContextPath().length());
if (calledMethod.startsWith("/"))
calledMethod = calledMethod.replaceFirst("/","");
}
CalledMethodProvider.instance.set(calledMethod);
String caller = AuthorizationProvider.instance.get()!=null? AuthorizationProvider.instance.get().getClient().getId(): "UNKNOWN";
startCallThreadLocal.set(System.currentTimeMillis());
log.info("REQUEST START ON {}:{}({}) CALLED FROM {}@{} IN SCOPE {} ",
context.configuration().name(),context.configuration().serviceClass(), CalledMethodProvider.instance.get(),
caller, e.request().getRemoteHost(), ScopeProvider.instance.get());
}
@Override
public void handleResponse(ResponseEvent e) {
ApplicationContext context = e.context();
String caller = AuthorizationProvider.instance.get()!=null? AuthorizationProvider.instance.get().getClient().getId(): "UNKNOWN";
String callerQualifier = AuthorizationProvider.instance.get()!=null? AuthorizationProvider.instance.get().getTokenQualifier(): "UNKNOWN";
//retieves caller Ip when there is a proxy
String callerIp = e.request().getHeader("x-forwarded-for");
if(callerIp==null)
callerIp=e.request().getRemoteHost();
generateAccounting(caller,callerQualifier,callerIp==null?"UNKNOWN":callerIp , context);
log.info("REQUEST SERVED ON {}:{}({}) CALLED FROM {}@{} IN SCOPE {} FINISHED IN {} millis",
context.configuration().name(),context.configuration().serviceClass(), CalledMethodProvider.instance.get(),
caller, callerIp, ScopeProvider.instance.get(), System.currentTimeMillis()-startCallThreadLocal.get());
startCallThreadLocal.remove();
CalledMethodProvider.instance.reset();
}
void generateAccounting(String caller, String callerQualifier, String remoteHost, ApplicationContext context){
AccountingPersistenceFactory.setFallbackLocation(context.container().persistence().location());
AccountingPersistence persistence = AccountingPersistenceFactory.getPersistence();
ServiceUsageRecord serviceUsageRecord = new ServiceUsageRecord();
try{
serviceUsageRecord.setConsumerId(caller);
serviceUsageRecord.setCallerQualifier(callerQualifier);
serviceUsageRecord.setScope(ScopeProvider.instance.get());
serviceUsageRecord.setServiceClass(context.configuration().serviceClass());
serviceUsageRecord.setServiceName(context.configuration().name());
serviceUsageRecord.setHost(context.container().configuration().hostname()+":"+context.container().configuration().port());
serviceUsageRecord.setCalledMethod(CalledMethodProvider.instance.get());
serviceUsageRecord.setCallerHost(remoteHost);
serviceUsageRecord.setOperationResult(OperationResult.SUCCESS);
serviceUsageRecord.setDuration(System.currentTimeMillis()-startCallThreadLocal.get());
persistence.account(serviceUsageRecord);
}catch(Exception ex){
log.warn("invalid record passed to accounting ",ex);
}
}
}

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package org.gcube.smartgears.handlers.application.request;
import javax.servlet.http.HttpServletResponse;
/**
* Known error types.
* <p>
* Each type can throw a corresponding {@link RequestException}.
*
* @author Fabio Simeoni
*
*/
public enum RequestError {
/**
* The error raised when requests are made to failed applications.
*/
application_failed_error(HttpServletResponse.SC_GONE,"this resource is not currently available"),
/**
* The error raised when requests are made to stopped applications.
*/
application_unavailable_error(HttpServletResponse.SC_SERVICE_UNAVAILABLE, "this resource is permanently available"),
/**
* The error raised when requests are made to unknown resources.
*/
resource_notfound_error(HttpServletResponse.SC_NOT_FOUND, "no gCube resource at this URI"),
/**
* The error raised when requests require illegal resource state transitions.
*/
illegal_state_error(HttpServletResponse.SC_CONFLICT, "this resource cannot assume the required state"),
/**
* The error raised when requests are made with unsupported HTTP methods.
*/
method_unsupported_error(HttpServletResponse.SC_METHOD_NOT_ALLOWED, "this resource does not support this method"),
/**
* The error raised when requests are genrically invalid.
*/
invalid_request_error(HttpServletResponse.SC_BAD_REQUEST, "this resource cannot process this request because it is malformed"),
request_not_authorized_error(HttpServletResponse.SC_UNAUTHORIZED, "this resource cannot process this request because it needs authorization"),
internal_server_error(HttpServletResponse.SC_INTERNAL_SERVER_ERROR, "unexpected error"),
/**
* The error raised when requests carry an unsupported media type.
*/
incoming_contenttype_unsupported_error(HttpServletResponse.SC_UNSUPPORTED_MEDIA_TYPE, "this resource cannot consume this media type"),
/**
* The error raised when requests request an unsupported media type.
*/
outgoing_contenttype_unsupported_error(HttpServletResponse.SC_NOT_ACCEPTABLE, "this resource cannot produce this media type"),
/**
* An error raised by managed applications.
*/
application_error(HttpServletResponse.SC_INTERNAL_SERVER_ERROR, "this resource has incurred in a generic error");
private final int code;
private final String msg;
private RequestError(int code,String msg) {
this.code=code;
this.msg=msg;
}
public int code() {
return code;
}
public String message() {
return msg;
}
public void fire() {
throw toException();
}
public void fire(String msg) {
throw toException(msg);
}
public void fire(Throwable cause) {
throw toException(cause);
}
public void fire(String msg,Throwable cause) {
throw toException(msg,cause);
}
public RequestException toException() {
return new RequestException(this);
}
public RequestException toException(String msg) {
return new RequestException(this, msg);
}
public RequestException toException(Throwable cause) {
return new RequestException(this,cause);
}
public RequestException toException(String msg,Throwable cause) {
return new RequestException(this,cause,msg);
}
}

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package org.gcube.smartgears.handlers.application.request;
/**
* Thrown for the occurrence of an error during request processing.
*
* @author Fabio Simeoni
*
*/
public class RequestException extends RuntimeException {
/**
*
*/
private static final long serialVersionUID = 1L;
private final RequestError error;
/**
* Creates an instance with an underlying error.
* @param error the error
*/
public RequestException(RequestError error) {
this(error, error.message());
}
/**
* Creates an instance with an underling error and a custom message.
* @param message the message
* @param error the error
*/
public RequestException(RequestError error,String message) {
super(message);
this.error=error;
}
/**
* Creates an instance with an underlying error and an underlying cause
* @param error the error
* @param cause the cause;
*/
public RequestException(RequestError error,Throwable cause) {
this(error, cause, error.message());
}
/**
* Creates an instance with an underlying error, an underlying cause, and an underlying message.
* @param error the error
* @param cause the cause;
* @Param message the message;
*/
public RequestException(RequestError error,Throwable cause,String message) {
super(message,cause);
this.error=error;
}
/**
* Returns the underlying error.
* @return the error
*/
public RequestError error() {
return error;
}
}

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package org.gcube.smartgears.handlers.application.request;
import static org.gcube.common.authorization.client.Constants.authorizationService;
import static org.gcube.smartgears.Constants.request_validation;
import static org.gcube.smartgears.Constants.scope_header;
import static org.gcube.smartgears.Constants.token_header;
import static org.gcube.smartgears.handlers.application.request.RequestError.application_failed_error;
import static org.gcube.smartgears.handlers.application.request.RequestError.application_unavailable_error;
import static org.gcube.smartgears.handlers.application.request.RequestError.internal_server_error;
import static org.gcube.smartgears.handlers.application.request.RequestError.invalid_request_error;
import java.io.IOException;
import javax.xml.bind.DatatypeConverter;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.authorization.client.exceptions.ObjectNotFound;
import org.gcube.common.authorization.library.AuthorizationEntry;
import org.gcube.common.authorization.library.PolicyUtils;
import org.gcube.common.authorization.library.policies.Policy;
import org.gcube.common.authorization.library.provider.AuthorizationProvider;
import org.gcube.common.authorization.library.provider.ClientInfo;
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
import org.gcube.common.authorization.library.provider.ServiceIdentifier;
import org.gcube.common.authorization.library.provider.UserInfo;
import org.gcube.common.authorization.library.utils.Caller;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.smartgears.Constants;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.handlers.application.RequestEvent;
import org.gcube.smartgears.handlers.application.RequestHandler;
import org.gcube.smartgears.handlers.application.ResponseEvent;
import org.gcube.smartgears.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@XmlRootElement(name = Constants.request_validation)
public class RequestValidator extends RequestHandler {
private static Logger log = LoggerFactory.getLogger(RequestValidator.class);
private ApplicationContext context;
@Override
public String getName() {
return Constants.request_validation;
}
@Override
public void handleRequest(RequestEvent call) {
log.trace("executing request validator ON REQUEST");
context = call.context();
validateAgainstLifecycle(call);
if (!validateToken(call)){
String scope = call.request().getParameter(scope_header)==null? call.request().getHeader(scope_header):call.request().getParameter(scope_header);
validateScope(scope);
log.info("received call to {} in context {}",call.uri(),scope);
}
}
@Override
public void handleResponse(ResponseEvent e){
SecurityTokenProvider.instance.reset();
AuthorizationProvider.instance.reset();
ScopeProvider.instance.reset();
log.debug("resetting all the Thread local for this call.");
}
private void validateAgainstLifecycle(RequestEvent call) {
switch(context.lifecycle().state()) {
case stopped :
application_unavailable_error.fire(); break;
case failed:
application_failed_error.fire(); break;
default:
//nothing to do, but avoids warnings
}
}
private void validateScope(String scope) {
if (scope == null) {
log.warn("rejecting unscoped call to {}",context.name());
invalid_request_error.fire("call is unscoped");
}
if (!context.container().configuration().allowedContexts().contains(scope)) {
log.warn("rejecting call to {} in invalid context {}, allowed context are {}",context.name(),scope,context.container().configuration().allowedContexts());
invalid_request_error.fire(context.name()+" cannot be called in scope "+scope);
}
ScopeProvider.instance.set(scope);
}
private boolean validateToken(RequestEvent call){
String token = call.request().getParameter(token_header)==null? call.request().getHeader(token_header):call.request().getParameter(token_header);
String scope = call.request().getParameter(scope_header)==null? call.request().getHeader(scope_header):call.request().getParameter(scope_header);
if (token == null && scope==null){
log.warn("rejecting call to {}, authorization required",context.name(),token);
if (call.context().container().configuration().authenticationEnpoint()==null){
if (call.request().getHeader(Constants.authorization_header)!=null){
String basicAuthorization = call.request().getHeader(Constants.authorization_header);
String base64Credentials = basicAuthorization.substring("Basic".length()).trim();
String credentials = new String(DatatypeConverter.parseBase64Binary(base64Credentials));
// credentials = username:password
final String[] values = credentials.split(":",2);
token = values[1];
ClientInfo info = retreiveAndSetInfo(token, call);
if (!(info instanceof UserInfo) || !info.getId().equals(values[0])) {
log.warn("rejecting call to {}, username {} not valid for token {}",context.name(),values[0],token);
RequestError.request_not_authorized_error.fire(context.name()+": username "+values[0]+" not valid for token "+token);
}
return true;
}else {
log.warn("rejecting call to {}, authorization required",context.name(),token);
RequestError.request_not_authorized_error.fire(context.name()+": authorization required");
}
}else {
log.info("authorization enpoint found on configuration, redirecting the call");
String recallLocation = String.format("http://%s:%d%s", call.context().container().configuration().hostname(), call.context().container().configuration().port(), call.uri());
//call.response().setHeader("Allowed-Contexts", call.context().container().configuration().allowedContexts().toString());
try {
call.response().sendRedirect(context.container().configuration().authenticationEnpoint()+"?Recall-Location="+recallLocation);
} catch (IOException e) {
log.error("errror redirecting call",e );
}
return false;
}
}
log.trace("token is "+token);
if (token!=null){
retreiveAndSetInfo(token, call);
return true;
}
log.info("invalid token, checking the context");
return false;
}
@Override
public String toString() {
return request_validation;
}
private ClientInfo retreiveAndSetInfo(String token, RequestEvent call){
log.info("accessing validator with token {} ", token);
AuthorizationEntry authEntry = null;
try{
authEntry = authorizationService().get(token);
}catch(ObjectNotFound onf){
log.warn("rejecting call to {}, invalid token {}",context.name(),token);
invalid_request_error.fire(context.name()+" invalid token : "+token);
}catch(Exception e){
log.error("error contacting authorization service",e);
internal_server_error.fire("error contacting authorization service");
}
ServiceIdentifier serviceIdentifier = Utils.getServiceInfo(call.context()).getServiceIdentifier();
for (Policy policy: authEntry.getPolicies())
if (PolicyUtils.isPolicyValidForClient(policy.getServiceAccess(), serviceIdentifier)){
log.error("rejecting call to {} : {} is not allowed to contact the service ",context.name(),authEntry.getClientInfo().getId());
invalid_request_error.fire("rejecting call to "+context.name()+": "+authEntry.getClientInfo().getId()+" is not allowed to contact the service");
}
AuthorizationProvider.instance.set(new Caller(authEntry.getClientInfo(), authEntry.getQualifier()));
validateScope(authEntry.getContext());
log.info("retrieved request authorization info {} in scope {} ", AuthorizationProvider.instance.get(), authEntry.getContext());
SecurityTokenProvider.instance.set(token);
return authEntry.getClientInfo();
}
}

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package org.gcube.smartgears.handlers.container;
import org.gcube.smartgears.handlers.AbstractHandler;
import org.gcube.smartgears.handlers.Handler;
/**
* A {@link Handler} of {@link ContainerLifecycleEvent}s.
*
* @author Fabio Simeoni
*
*/
public abstract class ContainerHandler extends AbstractHandler implements Handler<ContainerLifecycleEvent> {
/**
* Invoked when the container starts.
* @param e the event
*/
public void onStart(ContainerLifecycleEvent.Start e) {
}
/**
* Invoked when the container stops.
* @param e the stop event
*/
public void onStop(ContainerLifecycleEvent.Stop e) {
}
@Override
public void onEvent(ContainerLifecycleEvent e) {
if (e instanceof ContainerLifecycleEvent.Start)
onStart(ContainerLifecycleEvent.Start.class.cast(e));
else
if (e instanceof ContainerLifecycleEvent.Stop)
onStop(ContainerLifecycleEvent.Stop.class.cast(e));
}
}

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package org.gcube.smartgears.handlers.container;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.handlers.Event;
/**
* An {@link Event} that occurs in the lifetime of the container.
* @author Fabio Simeoni
*
*/
public abstract class ContainerLifecycleEvent extends Event<ContainerContext> {
/**
* An {@link ContainerLifecycleEvent} that occurs when the container starts.
*/
public static class Start extends ContainerLifecycleEvent {
/**
* Creates an instance for a given {@link ContainerContext}.
* @param context the context
*/
public Start(ContainerContext context) {
super(context);
}
}
/**
* An {@link ContainerLifecycleEvent} that occurs when the container stops.
*/
public static class Stop extends ContainerLifecycleEvent {
/**
* Creates an instance for a given {@link ContainerContext}.
* @param context the context
*/
public Stop(ContainerContext context) {
super(context);
}
}
/**
* Creates an instance with the context of the container.
* @param context the context
*/
ContainerLifecycleEvent(ContainerContext context) {
super(context);
}
}

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package org.gcube.smartgears.handlers.container;
import java.util.Collections;
import java.util.List;
import org.gcube.smartgears.handlers.Pipeline;
/**
* A {@link Pipeline} of {@link ContainerHandler}s.
*
* @author Fabio Simeoni
*
*
*/
public class ContainerPipeline extends Pipeline<ContainerLifecycleEvent, ContainerHandler> {
/**
* Creates an instance with a given list of handlers.
* <p>
* Modification to the input list do not affect the pipeline.
*
* @param handlers the handlers
*/
public ContainerPipeline(List<ContainerHandler> handlers) {
super(handlers);
}
/**
* Returns a pipeline with the same handlers as this pipeline but in reverse order.
* @return the reversed pipeline
*/
public ContainerPipeline reverse() {
List<ContainerHandler> handlers = handlers(); // it's a copy, we're not changing this pipeline
Collections.reverse(handlers);
return new ContainerPipeline(handlers);
}
}

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/**
*
*/
package org.gcube.smartgears.handlers.container.lifecycle;
import static org.gcube.smartgears.Constants.accounting_management;
import java.util.concurrent.TimeUnit;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.accounting.persistence.AccountingPersistenceFactory;
import org.gcube.smartgears.handlers.container.ContainerHandler;
import org.gcube.smartgears.handlers.container.ContainerLifecycleEvent;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* @author Luca Frosini (ISTI - CNR) http://www.lucafrosini.com/
*/
@XmlRootElement(name = accounting_management)
public class AccountingManager extends ContainerHandler {
private static Logger logger = LoggerFactory.getLogger(AccountingManager.class);
@Override
public void onStop(ContainerLifecycleEvent.Stop e) {
logger.trace("Going to flush accounting data");
AccountingPersistenceFactory.flushAll(1000, TimeUnit.MILLISECONDS);
}
@Override
public String toString() {
return accounting_management;
}
}

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package org.gcube.smartgears.handlers.container.lifecycle;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.io.Reader;
import java.math.BigDecimal;
import java.net.InetAddress;
import java.net.UnknownHostException;
import java.nio.file.Files;
import java.nio.file.Paths;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.HashMap;
import java.util.Map;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.gcube.common.resources.gcore.HostingNode;
import org.gcube.common.resources.gcore.HostingNode.Profile.NodeDescription.GHNType;
import org.gcube.common.resources.gcore.HostingNode.Profile.NodeDescription.Processor;
import org.gcube.common.resources.gcore.HostingNode.Profile.NodeDescription.Variable;
import org.gcube.common.resources.gcore.utils.Group;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.configuration.library.SmartGearsConfiguration;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.provider.ProviderFactory;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* @author Fabio Simeoni
* @author Luca Frosini (ISTI - CNR) http://www.lucafrosini.com/
*
*/
public class ProfileBuilder {
private static Logger log = LoggerFactory.getLogger(ProfileBuilder.class);
private ContainerContext context;
public ProfileBuilder(ContainerContext context) {
this.context = context;
}
public HostingNode create() {
HostingNode node = new HostingNode();
ContainerConfiguration cfg = context.configuration();
node.newProfile().infrastructure(cfg.infrastructure());
addSiteTo(node);
String ip = null;
try {
ip = InetAddress.getLocalHost().getHostAddress();
} catch (UnknownHostException e) {
log.warn("unable to detect the IP address of the host");
}
node.profile().newDescription().activationTime(Calendar.getInstance()).name(cfg.hostname() + ":" + cfg.port());
node.profile().description().networkAdapters().add().mtu(0).name("local-adapter").ipAddress(ip).inboundIP("")
.outboundIP("");
node.profile().description().newOperatingSystem().name(System.getProperty("os.name"))
.version(System.getProperty("os.version")).release("");
node.profile().description().newArchitecture().platformType(System.getProperty("os.arch")).smpSize(0)
.smtSize(0);
ArrayList<HashMap<String, String>> info = cpuInfo();
Group<Processor> processors = node.profile().description().processors();
for (HashMap<String, String> map : info)
processors.add().bogomips(new BigDecimal(map.get("bogomips")))
.clockSpeedMhz(new BigDecimal(map.get("cpu_MHz"))).family(map.get("cpu_family"))
.modelName(map.get("model_name")).model(map.get("model")).vendor(map.get("vendor_id"))
.cacheL1(new Integer(map.get("cache_size"))).cacheL1D(0).cacheL1I(0).cacheL2(0);
addVariablesTo(node);
update(node,false);
node.profile().description().type(GHNType.Static);
// String type = (String) context.getProperty(GHNContext.GHN_TYPE, false);
// if (type.compareToIgnoreCase(Type.DYNAMIC.toString()) == 0) description.setType(Description.Type.Dynamic);
// else if (type.compareToIgnoreCase(Type.STATIC.toString()) == 0) description.setType(Description.Type.Static);
// else if (type.compareToIgnoreCase(Type.SELFCLEANING.toString()) == 0)
// description.setType(Description.Type.Selfcleaning);
//
// file system
node.profile().description().localFileSystems().add().name("").type("").readOnly(false)
.root(cfg.persistence().location());
return node;
}
@SuppressWarnings("all")
private ArrayList<HashMap<String, String>> cpuInfo() {
ArrayList<HashMap<String, String>> map = new ArrayList<HashMap<String, String>>();
File file = new File("/proc/cpuinfo");
if (!file.exists()) {
log.warn("cannot acquire CPU info (no /proc/cpuinfo)");
return map;
}
BufferedReader input = null;
try {
input = new BufferedReader(new FileReader(file));
String line = null;
HashMap<String, String> currentProcessor = null;
while ((line = input.readLine()) != null) {
if ((line.startsWith("processor"))) { // add the current processor to the map
if (currentProcessor != null)
map.add((HashMap) currentProcessor.clone());
currentProcessor = new HashMap<String, String>();
}
try {
if (line.contains("vendor_id"))
currentProcessor.put("vendor_id", line.split(":")[1].trim());
} catch (Exception ex) {
}
try {
if (line.contains("cpu family"))
currentProcessor.put("cpu_family", line.split(":")[1].trim());
} catch (Exception ex) {
}
try {
if ((line.contains("model\t")) || (line.contains("model\b")))
currentProcessor.put("model", line.split(":")[1].trim());
} catch (Exception ex) {
}
try {
if (line.contains("model name"))
currentProcessor.put("model_name", line.split(":")[1].trim());
} catch (Exception ex) {
}
try {
if (line.contains("cpu MHz"))
currentProcessor.put("cpu_MHz", line.split(":")[1].trim());
} catch (Exception ex) {
}
try {
if (line.contains("cache size"))
currentProcessor.put("cache_size", line.split(":")[1].trim().split(" ")[0]);
} catch (Exception ex) {
}
try {
if (line.contains("bogomips"))
currentProcessor.put("bogomips", line.split(":")[1].trim());
} catch (Exception ex) {
}
}
if (currentProcessor != null)
map.add(currentProcessor);
} catch (Exception e) {
log.warn("unable to acquire CPU info", e);
} finally {
if (input != null)
try {
input.close();
} catch (IOException e) {
log.warn("unable to close stream", e);
}
}
return map;
}
private long getFreeSpace() {
long free = 0;
try {
free = Files.getFileStore(Paths.get(context.configuration().persistence().location())).getUsableSpace()/1024;
} catch (IOException ioe) {
log.warn("unable to detect the free space on the disk", ioe);
}
return free;
}
public void update(HostingNode node,boolean onLoad) {
ContainerConfiguration cfg = context.configuration();
if (onLoad) {
log.info("updating ghn profile");
node.profile().description().activationTime(Calendar.getInstance()).name(cfg.hostname() + ":" + cfg.port());
addVariablesTo(node);
addSiteTo(node);
}
node.profile().description().status(context.lifecycle().state().remoteForm());
Map<String, Long> mem = memoryUsage();
node.profile().description().newMainMemory().ramAvailable(mem.get("MemoryAvailable"))
.ramSize(mem.get("MemoryTotalSize")).virtualAvailable(mem.get("VirtualAvailable"))
.virtualSize(mem.get("VirtualSize"));
node.profile().description().localAvailableSpace(getFreeSpace());
node.profile().description().uptime(uptime());
node.profile().description().lastUpdate(Calendar.getInstance());
Map<String, Double> loads = loadStatistics();
node.profile().description().newLoad().lastMin(loads.get("1min") == null ? 0 : loads.get("1min"))
.last5Mins(loads.get("5mins") == null ? 0 : loads.get("5mins"))
.last15Mins(loads.get("15mins") == null ? 0 : loads.get("15mins"));
}
private void addSiteTo(HostingNode node) {
ContainerConfiguration cfg = context.configuration();
node.profile().newSite().country(cfg.site().country()).location(cfg.site().location())
.latitude(cfg.site().latitude()).longitude(cfg.site().longitude()).domain(domainIn(cfg.hostname()));
}
private void addVariablesTo(HostingNode node) {
ContainerConfiguration cfg = context.configuration();
Group<Variable> variables = node.profile().description().environmentVariables();
// Cleaning variables to avoid duplicates
variables.removeAll(node.profile().description().environmentVariables());
Map<String, String> map = new HashMap<String, String>();
map.putAll(cfg.properties());
map.putAll(System.getenv());
for (Map.Entry<String, String> entry : map.entrySet()) {
String varname = entry.getKey();
if ((varname.compareToIgnoreCase("CLASSPATH") == 0) || (varname.compareToIgnoreCase("PATH") == 0)
|| (varname.contains("SSH")) || (varname.contains("MAIL"))
|| (varname.compareToIgnoreCase("LS_COLORS") == 0))
continue;
variables.add().keyAndValue(entry.getKey(), entry.getValue());
}
/* The following code is useless can be removed
Map<String, String> envvars = new HashMap<String, String>();
for (String varname : envvars.keySet()) {
// a bit of filtering
if ((varname.compareToIgnoreCase("CLASSPATH") == 0) || (varname.compareToIgnoreCase("PATH") == 0)
|| (varname.contains("SSH")) || (varname.contains("MAIL"))
|| (varname.compareToIgnoreCase("LS_COLORS") == 0))
continue;
variables.add().keyAndValue(varname, envvars.get(varname));
}
*/
variables.add().keyAndValue("Java", System.getProperty("java.version"));
SmartGearsConfiguration config = ProviderFactory.provider().smartgearsConfiguration();
variables.add().keyAndValue("SmartGears",config.version());
variables.add().keyAndValue("ghn-update-interval-in-secs", String.valueOf(cfg.publicationFrequency()));
}
public String uptime() {
String lines = "", linetemp = null;
try {
Process p = Runtime.getRuntime().exec("uptime");
p.waitFor();
BufferedReader input = new BufferedReader(new InputStreamReader(p.getInputStream()));
while ((linetemp = input.readLine()) != null)
lines += linetemp;
input.close();
p.destroy();
lines = lines.split(",")[0].split("up")[1].trim();
} catch (Exception e) {
log.warn("unable to detect the uptime of this machine", e);
lines = "unable to detect";
}
return lines;
}
public Map<String, Double> loadStatistics() {
Map<String, Double> result = new HashMap<String, Double>();
try {
File loadadv = new File("/proc/loadavg");
if (loadadv.exists()) {
Reader reader = new FileReader(loadadv);
int c;
StringBuilder content = new StringBuilder();
while ((c = reader.read()) != -1)
content.append((char) c);
reader.close();
Pattern p = Pattern.compile("^(.*?)\\s{1}(.*?)\\s{1}(.*?)\\s{1}(.*)$");
Matcher matcher = p.matcher(content.toString());
if ((matcher.matches()) && (matcher.groupCount() > 3)) {
result.put("1min", new Double(matcher.group(1)));
result.put("5mins", new Double(matcher.group(2)));
result.put("15mins", new Double(matcher.group(3).split("\\s")[0]));
}
}
} catch (Exception ioe) {
log.warn("unable to detect the load values of this machine", ioe);
}
return result;
}
@SuppressWarnings("all")
public Map<String, Long> memoryUsage() {
Map<String, Long> map = new HashMap<String, Long>();
java.lang.management.OperatingSystemMXBean mxbean = java.lang.management.ManagementFactory
.getOperatingSystemMXBean();
com.sun.management.OperatingSystemMXBean sunmxbean = (com.sun.management.OperatingSystemMXBean) mxbean;
long freeMemory = sunmxbean.getFreePhysicalMemorySize() / 1048576; // in MB
long availableMemory = sunmxbean.getTotalPhysicalMemorySize() / 1048576; // in MB
map.put("MemoryAvailable", freeMemory);
map.put("MemoryTotalSize", availableMemory);
long ramVirtualAvailable = Runtime.getRuntime().freeMemory() / 1048576; // in MB
long ramVirtualSize = Runtime.getRuntime().totalMemory() / 1048576; // in MB
map.put("VirtualAvailable", ramVirtualAvailable);
map.put("VirtualSize", ramVirtualSize);
return map;
}
private String domainIn(String hostname) {
Pattern pattern = Pattern.compile("([0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3})");
java.util.regex.Matcher regexMatcher = pattern.matcher(hostname);
if (regexMatcher.matches()) //it's an IP address, nothing to trim
return hostname;
String[] tokens = hostname.split("\\.");
if (tokens.length < 2)
return hostname;
else
return tokens[tokens.length-2]+ "." + tokens[tokens.length-1];
}
}

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package org.gcube.smartgears.handlers.container.lifecycle;
import static java.util.concurrent.TimeUnit.SECONDS;
import static org.gcube.common.events.Observes.Kind.critical;
import static org.gcube.common.events.Observes.Kind.resilient;
import static org.gcube.smartgears.Constants.container_profile_property;
import static org.gcube.smartgears.Constants.profile_management;
import static org.gcube.smartgears.handlers.ProfileEvents.addToContext;
import static org.gcube.smartgears.handlers.ProfileEvents.changed;
import static org.gcube.smartgears.handlers.ProfileEvents.published;
import static org.gcube.smartgears.handlers.ProfileEvents.removeFromContext;
import static org.gcube.smartgears.lifecycle.container.ContainerLifecycle.activation;
import static org.gcube.smartgears.lifecycle.container.ContainerLifecycle.failure;
import static org.gcube.smartgears.lifecycle.container.ContainerLifecycle.part_activation;
import static org.gcube.smartgears.lifecycle.container.ContainerLifecycle.shutdown;
import static org.gcube.smartgears.lifecycle.container.ContainerLifecycle.stop;
import static org.gcube.smartgears.lifecycle.container.ContainerState.active;
import java.util.Collections;
import java.util.concurrent.ScheduledFuture;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.events.Observes;
import org.gcube.common.resources.gcore.HostingNode;
import org.gcube.smartgears.context.Property;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.handlers.container.ContainerHandler;
import org.gcube.smartgears.handlers.container.ContainerLifecycleEvent.Start;
import org.gcube.smartgears.lifecycle.container.ContainerLifecycle;
import org.gcube.smartgears.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
*
* Manages the resource profile of the container.
* <p>
*
* The manager:
*
* <ul>
* <li>creates the profile when the container starts for the first time;
* <li>loads the profile when the container restarts;
* <li>publishes the profile when the container becomes active, and at any lifecycle change thereafter;
* <li>stores the profile locally after each publication;
* </ul>
*
* @author Fabio Simeoni
* @see ProfileBuilder
*/
@XmlRootElement(name = profile_management)
public class ProfileManager extends ContainerHandler {
private static Logger log = LoggerFactory.getLogger(ProfileManager.class);
private ContainerContext context;
private ProfileBuilder builder;
private ProfilePublisher publisher;
private ScheduledFuture<?> periodicUpdates;
@Override
public void onStart(Start e) {
context = e.context();
builder = new ProfileBuilder(context);
activated();
// note we don't fire profile events, but wait for the final startup response which
// will result in a state change. only then we publish and store the profile
// this avoids the redundancy and performance penalty of storing and publishing multiple
// times in rapid succession (which would be correct). Revise if proves problematic in corner
// cases.
}
private void activated(){
HostingNode profile = loadOrCreateProfile();
share(profile);
publisher = new ProfilePublisher(context);
registerObservers();
schedulePeriodicUpdates();
}
private void registerObservers() {
context.events().subscribe(new Object() {
@Observes({ activation, part_activation, shutdown, stop, failure })
void onChanged(ContainerLifecycle lc) {
HostingNode profile = context.profile(HostingNode.class);
profile.profile().description().status(lc.state().remoteForm());
// since we do not know the observers, they will deal with failures and their consequences
// any that comes back will be logged in this event thread
context.events().fire(profile, changed);
}
@Observes(value = published)
void shareAfterPublish(HostingNode profile) {
share(profile); // publish may produce a new profile instance
}
@Observes(value = changed, kind = critical)
void publishAfterChange(HostingNode profile) {
log.info("Publish after profile Change event called");
publish(profile); // if successful, triggers share and store.
}
@Observes(value = addToContext)
void addTo(String token) {
try {
log.trace("publishing container with new token");
publisher.addTo(Collections.singleton(token));
publisher.update();
}catch (Exception e) {
log.error("cannot add token {} (see details)",token, e);
// since we've failed no published event is fired and profile
// will not be stored.
// we do it manually to ensure we leave some local trace of the
// changed profile.
//TODO: CHECK --- store(profile);
}
}
@Observes(value = removeFromContext)
void removeFrom(String token) {
try {
log.trace("unpublishing container with new token");
publisher.removeFrom(Collections.singleton(token));
publisher.update();
}catch (Exception e) {
log.error("cannot remove token {} (see details)",token, e);
// since we've failed no published event is fired and profile
// will not be stored.
// we do it manually to ensure we leave some local trace of the
// changed profile.
//TODO: CHECK --- store(profile);
}
}
});
}
private HostingNode loadOrCreateProfile() {
return createProfile();
}
private void share(HostingNode profile) {
log.trace("sharing container profile");
context.properties().add(new Property(container_profile_property, profile));
}
private HostingNode createProfile() {
log.info("creating container profile");
try {
HostingNode node = builder.create();
node.setId(context.id());
return node;
} catch (Throwable e) {
// this is a critical startup failure: it will fail the application
throw new RuntimeException("cannot create container profile", e);
}
}
private void publish(HostingNode profile) {
//ContainerConfiguration configuration = context.configuration();
// first-publication vs. routine publication: when we delete scopes let's make sure there is
// at least one left of it will be re-triggered
boolean firstPublication = profile.scopes().isEmpty();
try {
if (firstPublication)
publisher.addToAll();
else
publisher.update();
} catch (Exception e) {
log.error("cannot publish container (see details)", e);
// since we've failed no published event is fired and profile will not be stored.
// we do it manually to ensure we leave some local trace of the changed profile.
//store(profile);
}
}
private void schedulePeriodicUpdates() {
// register to cancel updates
context.events().subscribe(
new Object() {
// we register it in response to lifecycle events so that we can stop and resume along with application
@Observes(value = { activation, part_activation }, kind = resilient)
synchronized void restartPeriodicUpdates(ContainerLifecycle lc) {
//already running
if (periodicUpdates!=null)
return;
if (lc.state()==active)
log.info("scheduling periodic updates of container profile");
else
log.info("resuming periodic updates of container profile");
final Runnable updateTask = new Runnable() {
public void run() {
HostingNode profile = context.profile(HostingNode.class);
try {
builder.update(profile, false);
}
catch(Exception e) {
//we may fail in the update of the profile
log.error("cannot complete periodic update of container profile",e);
}
//if handling of event generates failures these will be reported
//for resilience we do not fail the application
log.trace("firing change event on container profile");
context.events().fire(profile,changed);
}
};
periodicUpdates = Utils.scheduledServicePool.scheduleAtFixedRate(updateTask, 3, context.configuration()
.publicationFrequency(), SECONDS);
}
@Observes(value = { stop, failure, shutdown }, kind = resilient)
synchronized void cancelPeriodicUpdates(ContainerLifecycle ignore) {
if (periodicUpdates != null){
log.trace("stopping periodic updates of container profile");
try {
periodicUpdates.cancel(true);
periodicUpdates=null;
}
catch(Exception e) {
log.warn("could not stop periodic updates of container profile",e);
}
}
}
});
}
@Override
public String toString() {
return profile_management;
}
}

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package org.gcube.smartgears.handlers.container.lifecycle;
import static org.gcube.smartgears.utils.Utils.notEmpty;
import static org.gcube.smartgears.utils.Utils.rethrowUnchecked;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import org.gcube.common.authorization.client.proxy.AuthorizationProxy;
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
import org.gcube.common.resources.gcore.HostingNode;
import org.gcube.informationsystem.publisher.ScopedPublisher;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.handlers.ProfileEvents;
import org.gcube.smartgears.provider.ProviderFactory;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Publishes the resource profile of the container.
* <p>
* Distinguishes publication in new scopes ({@link #addTo(List)} from publication updates in existing scopes ({@link #update(List)}.
*
* @author Fabio Simeoni
*
*/
public class ProfilePublisher {
private static final Logger log = LoggerFactory.getLogger(ProfilePublisher.class);
//the underlying IS publisher
private final ScopedPublisher publisher;
//private final AuthorizationProvider authorization;
private final ContainerContext context;
private AuthorizationProxy authProxy ;
/**
* Creates an instance for the container.
* @param context the context of the application
*/
public ProfilePublisher(ContainerContext context) {
this.context = context;
this.publisher=ProviderFactory.provider().publisherFor(context);
this.authProxy = ProviderFactory.provider().authorizationProxy();
}
/**
* Adds the current resource profile of the application in one or more
* scopes. The scopes are retrieved from tokens
* @param tokens the tokens
*/
public void addTo(Collection<String> tokens) {
notEmpty("tokens",tokens);
log.info("publishing container with tokens {}", tokens);
HostingNode profile = context.profile(HostingNode.class);
/* TODO: reintroduce it when scope will be removed
//TODO: remove when move to new IS
Collection<String> retainedContexts = new ArrayList<String>(context.configuration().allowedContexts());
retainedContexts.removeAll(profile.scopes().asCollection());
profile.scopes().asCollection().addAll(retainedContexts);
log.trace("profile scopes on create are {} ",profile.scopes().asCollection());
String previousToken = SecurityTokenProvider.instance.get();
try {
for (String token: tokens){
log.info("creating profile with token {}", token);
SecurityTokenProvider.instance.set(token);
profile = publisher.create(profile);
SecurityTokenProvider.instance.reset();
}
update();
} catch (Exception e) {
log.warn("error adding scopes",e);
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
}*/
ClassLoader contextCL = Thread.currentThread().getContextClassLoader();
String previousToken = SecurityTokenProvider.instance.get();
try{//This classloader set is needed for the jaxb context
if (previousToken==null)
SecurityTokenProvider.instance.set((String)tokens.toArray()[0]);
Thread.currentThread().setContextClassLoader(ProfilePublisher.class.getClassLoader());
profile = publisher.create(profile, resolveScopesFromTokens(tokens));
} catch (Exception e) {
rethrowUnchecked(e);
} finally {
SecurityTokenProvider.instance.set(previousToken);
Thread.currentThread().setContextClassLoader(contextCL);
}
sharePublished(profile);
}
/**
* Adds the current resource profile of the application in one or more scopes.
*/
public void addToAll() {
addTo(context.configuration().startTokens());
}
/**
* Updates the current resource profile of the application in its current scopes.
*/
public void update() {
HostingNode profile = context.profile(HostingNode.class);
/* TODO: reintroduce it when scope will be removed
Collection<String> tokens = context.configuration().startTokens();
log.info("updating container with tokens {}", tokens);
String previousToken = SecurityTokenProvider.instance.get();
try {
for (String token: tokens){
SecurityTokenProvider.instance.set(token);
profile = publisher.update(profile);
SecurityTokenProvider.instance.reset();
}
sharePublished(profile);
}
catch (Exception e) {
log.warn("error updating container",e);
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
}*/
log.debug("[update] resource scopes are : {} ",profile.scopes().asCollection());
ClassLoader contextCL = Thread.currentThread().getContextClassLoader();
String previousToken = SecurityTokenProvider.instance.get();
try{//This classloader set is needed for the jaxb context
if (previousToken==null)
SecurityTokenProvider.instance.set((String)context.configuration().startTokens().toArray()[0]);
Thread.currentThread().setContextClassLoader(ProfilePublisher.class.getClassLoader());
profile = publisher.update(profile);
} catch (Exception e) {
rethrowUnchecked(e);
} finally {
SecurityTokenProvider.instance.set(previousToken);
Thread.currentThread().setContextClassLoader(contextCL);
}
sharePublished(profile);
}
/**
* Removes the container from one or more scopes.
* @param tokens the tokens
*/
public void removeFrom(Collection<String> tokens) {
HostingNode profile = context.profile(HostingNode.class);
log.info("removing container with tokens {}", tokens);
/* TODO: reintroduce it when scope will be removed
String previousToken = SecurityTokenProvider.instance.get();
try {
for (String token: tokens){
SecurityTokenProvider.instance.set(token);
profile = publisher.remove(profile);
SecurityTokenProvider.instance.reset();
}
update();
}
catch (Exception e) {
log.warn("error removing scopes",e);
rethrowUnchecked(e);
} finally{
SecurityTokenProvider.instance.set(previousToken);
} */
ClassLoader contextCL = Thread.currentThread().getContextClassLoader();
String previousToken = SecurityTokenProvider.instance.get();
try{//This classloader set is needed for the jaxb context
if (previousToken==null)
SecurityTokenProvider.instance.set((String)tokens.toArray()[0]);
Thread.currentThread().setContextClassLoader(ProfilePublisher.class.getClassLoader());
profile = publisher.remove(profile, resolveScopesFromTokens(tokens));
} catch (Exception e) {
rethrowUnchecked(e);
} finally {
SecurityTokenProvider.instance.set(previousToken);
Thread.currentThread().setContextClassLoader(contextCL);
}
log.debug("after remove container profile contains scopes {}",profile.scopes().asCollection());
sharePublished(profile);
}
private void sharePublished(HostingNode profile) {
context.events().fire(profile,ProfileEvents.published);
}
private List<String> resolveScopesFromTokens(Collection<String> tokens){
List<String> scopes = new ArrayList<String>(tokens.size());
for (String token: tokens)
try{
scopes.add(this.authProxy.get(token).getContext());
}catch (Exception e) {
log.warn("error retrieving token {} , it should never happen",token);
}
return scopes;
}
}

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package org.gcube.smartgears.lifecycle;
import org.gcube.common.events.Hub;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
public class DefaultLifecycle<S extends State<S>> implements Lifecycle<S> {
private static final Logger log = LoggerFactory.getLogger(Lifecycle.class);
private final Hub hub;
private final String name;
private S currentState;
private S previousState;
public DefaultLifecycle(Hub hub, String name, S startState){
this.hub = hub;
this.currentState = startState;
this.name = name;
}
@Override
public S state() {
return currentState;
}
@Override
public void moveTo(S next) {
if (next == currentState)
return;
if (currentState.next().contains(next)){
this.previousState = this.currentState;
this.currentState = next;
log.trace("{} transitioned from {} to {}",new Object[]{name,previousState,currentState});
hub.fire(this, currentState.event());
}
else throw new IllegalStateException("cannot transition "+name+" from " +currentState+" to "+next);
}
@Override
public boolean tryMoveTo(S next) {
try {
moveTo(next);
return true;
}
catch(IllegalStateException ignore) {
return false;
}
}
public S previous() {
return this.previousState;
}
}

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package org.gcube.smartgears.lifecycle;
/**
* The lifecycle of an application managed as a gCube service.
*
* @author Fabio Simeoni
*
*/
public interface Lifecycle<S extends State<S>> {
/**
* Returns the state from which this lifecycle transitioned to its current state.
* @return the previous state
*/
S previous();
/**
* Returns the current state of this lifecycle.
* @return the current state.
*/
S state();
/**
* Transition this lifecycle to a given state.
* @param state the state
*
* @throws IllegalStateException if the transition is illegal for this lifecycle
*/
void moveTo(S state);
/**
* Attempts to transition this lifecycle to a given state, but does not fail if the transition is illegal for this lifecycle.
* @param state the state
* @return <code>true<code> if this lifecycle has transitioned to the given state
*/
boolean tryMoveTo(S state);
}

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package org.gcube.smartgears.lifecycle;
import java.util.List;
public interface State<S extends State<S>> {
/**
* Returns the list of states to which services can transition to from this state.
* @return the states
*/
public abstract List<S> next();
/**
* Returns the event corresponding to this state.
* @return the
*/
public String event();
/**
* Returns a serialisation of this state for exchange purposes.
* @return
*/
public String remoteForm();
}

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package org.gcube.smartgears.lifecycle.application;
import org.gcube.common.events.Hub;
import org.gcube.smartgears.lifecycle.DefaultLifecycle;
import org.gcube.smartgears.lifecycle.Lifecycle;
/**
* The {@link Lifecycle} of an application.
*
* @author Fabio Simeoni
*
*/
public class ApplicationLifecycle extends DefaultLifecycle<ApplicationState> {
/**
* The event qualifier that correspond to the {@link ApplicationState#started} state of the service lifecycle.
*/
public static final String start = "start";
/**
* The event qualifier that correspond to the {@link ApplicationState#active} state of the service lifecycle.
*/
public static final String activation = "activation";
/**
* The event qualifier that correspond to the {@link ApplicationState#started#stopped} state of the service lifecycle.
*/
public static final String stop = "stop";
/**
* The event qualifier that correspond to the {@link ApplicationState#failed} state of the service lifecycle.
*/
public static final String failure = "failure";
public ApplicationLifecycle(Hub hub, String name){
super(hub,name,ApplicationState.started);
}
}

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package org.gcube.smartgears.lifecycle.application;
import static java.util.Arrays.*;
import static java.util.Collections.*;
import static org.gcube.smartgears.lifecycle.application.ApplicationLifecycle.*;
import java.util.List;
import org.gcube.smartgears.lifecycle.State;
/**
* The state and state transitions of the lifecycle of an application managed as a gCube service.
*
* @author Fabio Simeoni
*
*/
public enum ApplicationState implements State<ApplicationState> {
/**
* The state of applications that are in the process of initialisation.
*/
started(start){
public List<ApplicationState> next() {
return asList(active, failed);
}
@Override
public String remoteForm() {
return "STARTED";
}
},
/**
* The state of applications that have completed initialisation and can accept client requests.
*/
active(activation) {
public List<ApplicationState> next() {
return asList(failed,stopped);
}
@Override
public String remoteForm() {
return "ready";
}
},
/**
* The state of applications that have can no longer accept requests, even though they may in the future.
*/
stopped(stop){
public List<ApplicationState> next() {
return asList(failed,active);
}
@Override
public String remoteForm() {
return "down";
}
},
/**
* The permanent state of applications that has encountered some fatal failure and can no longer accept requests.
*/
failed(failure){
public List<ApplicationState> next() {
return emptyList();
}
@Override
public String remoteForm() {
return "failed";
}
};
private final String event;
//used internally
ApplicationState(String event) {
this.event=event;
}
@Override
public String event() {
return event;
}
}

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package org.gcube.smartgears.lifecycle.container;
import org.gcube.common.events.Hub;
import org.gcube.smartgears.lifecycle.DefaultLifecycle;
import org.gcube.smartgears.lifecycle.Lifecycle;
/**
* The {@link Lifecycle} of the application container.
*
* @author Fabio Simeoni
*
*/
public class ContainerLifecycle extends DefaultLifecycle<ContainerState> {
/**
* The event qualifier that correspond to the {@link ContainerState#pending} state of the container lifecycle.
*/
public static final String pending = "pending";
/**
* The event qualifier that correspond to the {@link ContainerState#started} state of the container lifecycle.
*/
public static final String start = "start";
/**
* The event qualifier that correspond to the {@link ContainerState#partActive} state of the container lifecycle.
*/
public static final String activation = "activation";
/**
* The event qualifier that correspond to the {@link ContainerState#active} state of the container lifecycle.
*/
public static final String part_activation = "part_activation";
/**
* The event qualifier that correspond to the {@link ContainerState#stopped} state of the container lifecycle.
*/
public static final String stop = "stop";
/**
* The event qualifier that correspond to the {@link ContainerState#stopped} state of the container lifecycle.
*/
public static final String shutdown = "shutdown";
/**
* The event qualifier that correspond to the {@link ContainerState#fa} state of the container lifecycle.
*/
public static final String failure = "failure";
/**
* Creates an instance with an event {@link Hub}.
*
* @param hub the event hub
*/
public ContainerLifecycle(Hub hub){
super(hub,"container",ContainerState.started);
}
}

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package org.gcube.smartgears.lifecycle.container;
import static java.util.Arrays.*;
import static org.gcube.smartgears.lifecycle.container.ContainerLifecycle.*;
import java.util.Collections;
import java.util.List;
import org.gcube.smartgears.lifecycle.State;
/**
* The state and state transitions of the lifecycle of an application managed as a gCube service.
*
* @author Fabio Simeoni
*
*/
public enum ContainerState implements State<ContainerState> {
/**
* The state of a container that is in the process of pre authorization.
*/
notAuthorized(pending){
public List<ContainerState> next() {
return asList(active,failed);
}
@Override
public String remoteForm() {
return "started";
}
},
/**
* The state of a container that is in the process of initialisation.
*/
started(start){
public List<ContainerState> next() {
return asList(active,failed);
}
@Override
public String remoteForm() {
return "started";
}
},
/**
* The state of a container in which not all applications are active.
*/
partActive(part_activation) {
public List<ContainerState> next() {
return asList(active,stopped,down);
}
@Override
public String remoteForm() {
return "ready";
}
},
/**
* The state of a container in which all applications are active.
*/
active(activation) {
public List<ContainerState> next() {
return asList(partActive,stopped,down);
}
@Override
public String remoteForm() {
return "certified";
}
},
/**
* The state of a container in which applications can no longer accept requests, even though they may in the future.
*/
stopped(stop){
public List<ContainerState> next() {
return asList(partActive,active);
}
@Override
public String remoteForm() {
return "down";
}
},
/**
* The state of a container which has been explicitly shutdown.
*/
down(shutdown){
public List<ContainerState> next() {
return asList(partActive,active);
}
@Override
public String remoteForm() {
return "down";
}
},
/**
* The state of a container that has not completed initialisation.
*/
failed(failure) {
public List<ContainerState> next() {
return Collections.emptyList();
}
@Override
public String remoteForm() {
return "failed";
}
};
private final String event;
//used internally
ContainerState(String event) {
this.event=event;
}
@Override
public String event() {
return event;
}
}

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package org.gcube.smartgears.managers;
import static java.util.concurrent.TimeUnit.SECONDS;
import static org.gcube.common.events.Observes.Kind.critical;
import static org.gcube.smartgears.Constants.context_attribute;
import static org.gcube.smartgears.Constants.profile_file_path;
import static org.gcube.smartgears.lifecycle.application.ApplicationState.active;
import static org.gcube.smartgears.lifecycle.application.ApplicationState.failed;
import static org.gcube.smartgears.lifecycle.application.ApplicationState.stopped;
import static org.gcube.smartgears.provider.ProviderFactory.provider;
import java.io.File;
import java.io.FileOutputStream;
import java.io.ObjectOutputStream;
import java.util.Collection;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import javax.servlet.FilterRegistration;
import javax.servlet.ServletContext;
import javax.servlet.ServletContextEvent;
import javax.servlet.ServletContextListener;
import javax.servlet.ServletRegistration;
import org.gcube.common.authorization.client.proxy.AuthorizationProxy;
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
import org.gcube.common.events.Observes;
import org.gcube.smartgears.Constants;
import org.gcube.smartgears.configuration.application.ApplicationExtensions;
import org.gcube.smartgears.configuration.application.ApplicationHandlers;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.extensions.ApplicationExtension;
import org.gcube.smartgears.extensions.RequestExceptionBarrier;
import org.gcube.smartgears.handlers.ProfileEvents;
import org.gcube.smartgears.handlers.application.ApplicationLifecycleEvent;
import org.gcube.smartgears.handlers.application.ApplicationLifecycleHandler;
import org.gcube.smartgears.handlers.application.ApplicationPipeline;
import org.gcube.smartgears.handlers.application.RequestHandler;
import org.gcube.smartgears.lifecycle.application.ApplicationLifecycle;
import org.gcube.smartgears.lifecycle.container.ContainerLifecycle;
import org.gcube.smartgears.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Coordinates management of an application as a gCube resource.
*
* @author Fabio Simeoni
*
*/
public class ApplicationManager {
private static Logger log = LoggerFactory.getLogger(ApplicationManager.class);
private ApplicationPipeline<ApplicationLifecycleHandler> lifecyclePipeline;
private ApplicationContext context;
/**
* Starts application management.
*
* @param container
* @param application the context of the application
* @return the context of the application
*/
public ApplicationContext start(ContainerContext container, ServletContext application) {
try {
context = provider().contextFor(container, application);
context.configuration().validate();
if (context.configuration().secure() &&
container.configuration().securePort()==null)
throw new IllegalStateException(
String.format("Application %s cannot be managed because is declared as secure without a secure connector port declared in the container", context.application().getContextPath()));
context.configuration().startTokens(generateTokensForApplication(container));
saveApplicationState();
// make context available to application in case it is gcube-aware
shareContextWith(application);
// prepare for events as early as possible
registerObservers();
ApplicationHandlers handlers = provider().handlersFor(context);
handlers.validate();
ApplicationExtensions extensions = provider().extensionsFor(context);
extensions.validate();
List<ApplicationLifecycleHandler> lifecycleHandlers = handlers.lifecycleHandlers();
List<RequestHandler> requestHandlers = handlers.requestHandlers();
log.trace("managing {} lifecycle with {}", context.name(), lifecycleHandlers);
log.trace("managing {} requests with {}", context.name(), requestHandlers);
log.trace("extending {} API with {}", context.name(), extensions);
// order is important here: first add APIs
register(extensions);
// then intercept them all
register(requestHandlers);
// start lifecycle management
start(lifecycleHandlers);
//adding the context name to the configuration
context.configuration().context(application.getContextPath());
// we're in business
context.lifecycle().moveTo(active);
return context;
} catch (RuntimeException e) {
log.error("error starting application {} ", context.name(),e);
if (context != null)
context.lifecycle().moveTo(failed);
throw e;
}
}
private Set<String> generateTokensForApplication(ContainerContext container){
log.info("generating token for app {}",context.configuration().name());
Set<String> tokens = new HashSet<String>();
AuthorizationProxy authProxy = provider().authorizationProxy();
for (String containerToken :container.configuration().startTokens())
tokens.add(generateApplicationToken(containerToken, authProxy));
return tokens;
}
private String generateApplicationToken(String containerToken, AuthorizationProxy authProxy){
SecurityTokenProvider.instance.set(containerToken);
try {
log.info("generating token for app {} with container token {} ",context.configuration().name(), containerToken);
return authProxy.generateServiceToken(Utils.getServiceInfo(context));
} catch (Exception e) {
throw new RuntimeException("error contacting authorization service",e);
} finally{
SecurityTokenProvider.instance.reset();
}
}
private void saveApplicationState() {
File file = context.configuration().persistence().file(profile_file_path);
try(ObjectOutputStream oos = new ObjectOutputStream(new FileOutputStream(file))){
oos.writeObject(context.id());
}catch (Exception e) {
log.error("error serializing application {} state", context.name());
throw new RuntimeException(e);
}
}
/**
* Stops application management.
*
*/
public void stop() {
if (context == null)
return;
log.info("stopping {} management", context.name());
try {
context.lifecycle().tryMoveTo(stopped);
context.events().fire(context, ApplicationLifecycle.stop);
stopLifecycleHandlers();
log.info("stopping application events for {}", context.name());
context.events().stop();
} catch (Exception e) {
log.warn("cannot stop {} management (see cause)", context.name(), e);
}
}
private void register(List<RequestHandler> rqHandlers) {
ServletContext app = context.application();
// attach filters based on request pipeline to each servlet
Collection<? extends ServletRegistration> servlets = app.getServletRegistrations().values();
for (ServletRegistration servlet : servlets) {
String name = servlet.getName();
if (name.equals("default") || name.equals("jsp")) // skip page-resolving servlets
continue;
for (String mapping : servlet.getMappings()) {
RequestManager requestFilter = new RequestManager(context, name, rqHandlers);
FilterRegistration.Dynamic filter = app.addFilter(name + "-filter-"+mapping.replaceAll("/", ""), requestFilter);
log.trace("filter {} for requestfilter {} in contextPath {} is null ?? {} ",name ,requestFilter, mapping, (filter==null));
filter.addMappingForUrlPatterns(null, false, mapping);
}
}
}
private void register(ApplicationExtensions extensions) {
ServletContext application = context.application();
for (ApplicationExtension extension : extensions.extensions())
try {
extension.init(context);
//register excludes
context.configuration().excludes().addAll(extension.excludes());
String mapping = extension.mapping();
application.addServlet(context.configuration().name() + "-" + extension.name(), extension)
.addMapping(mapping);
// adds a filter to map request exceptions onto error responses,
// repeating for our extensions what we already do for our filters.
// we do not interfere with error management of native application servlets
RequestExceptionBarrier barrier = new RequestExceptionBarrier();
FilterRegistration.Dynamic filter = application.addFilter("exception-barrier", barrier);
filter.addMappingForUrlPatterns(null, false, mapping);
log.info("registered API extension {} @ {}", extension.name(), mapping);
} catch (Exception e) {
throw new RuntimeException("cannot register API extension " + extension.name(), e);
}
}
private void start(List<ApplicationLifecycleHandler> handlers) {
try {
lifecyclePipeline = new ApplicationPipeline<ApplicationLifecycleHandler>(handlers);
lifecyclePipeline.forward(new ApplicationLifecycleEvent.Start(context));
} catch (RuntimeException e) {
context.lifecycle().tryMoveTo(failed);
throw e;
}
}
private void stopLifecycleHandlers() {
if (lifecyclePipeline == null)
return;
// copy pipeline, flip it, and
ApplicationPipeline<ApplicationLifecycleHandler> returnPipeline = lifecyclePipeline.reverse();
// start lifetime pipeline in inverse order with stop event
returnPipeline.forward(new ApplicationLifecycleEvent.Stop(context));
}
private void registerObservers() {
Object observer = new Object() {
@Observes(value = ContainerLifecycle.stop, kind = critical)
void onStopOf(ContainerLifecycle ignore) {
if (!context.lifecycle().tryMoveTo(stopped))
log.warn("cannot stop {} after container has stopped", context.name());
}
@Observes(value = ContextEvents.ADD_TOKEN_TO_APPLICATION, kind = critical)
void onAddToken(String containerToken) {
log.trace("event add received with token {} ",containerToken);
String appToken = generateApplicationToken(containerToken, provider().authorizationProxy());
context.configuration().startTokens().add(appToken);
log.trace("app token created : {} ", appToken);
context.events().fire(appToken, ProfileEvents.addToContext);
context.events().fire(appToken, Constants.token_registered);
}
@Observes(value = ContextEvents.REMOVE_TOKEN_FROM_APPLICATION, kind = critical)
void onRemoveToken(String containerToken) {
log.trace("event remove received with token {} ",containerToken);
String appToken = generateApplicationToken(containerToken, provider().authorizationProxy());
context.configuration().startTokens().remove(appToken);
log.trace("app token removed : {} ", appToken);
context.events().fire(appToken, ProfileEvents.removeFromContext);
context.events().fire(appToken, Constants.token_removed);
}
};
context.container().events().subscribe(observer);
// we cleanup when container stops
context.application().addListener(new ServletContextListener() {
@Override
public void contextInitialized(ServletContextEvent sce) {
log.info("initilizing context {} ",context.name());
context.events().fire(context.application().getContextPath(), ApplicationLifecycle.activation);
log.info("webApp {} initialized ",context.name());
}
//when the container shuts down we go down
@Override
public void contextDestroyed(ServletContextEvent sce) {
try {
log.info("stopping {} on undeployment|shutdown",context.name());
stop();
log.info("suspending undeployment|shutdow to allow {} to stop gracefully",context.name());
SECONDS.sleep(3);
log.info("resuming undeployment|shutdow after stopping {}",context.name());
}
catch (InterruptedException e) {
log.warn(context.name()+" cannot gracefully stop on undeployment|shutdow",e);
}
}
});
}
private void shareContextWith(ServletContext application) {
application.setAttribute(context_attribute, context);
}
}

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package org.gcube.smartgears.managers;
import static org.gcube.smartgears.Constants.container_profile_file_path;
import static org.gcube.smartgears.lifecycle.container.ContainerState.active;
import static org.gcube.smartgears.lifecycle.container.ContainerState.down;
import static org.gcube.smartgears.lifecycle.container.ContainerState.failed;
import static org.gcube.smartgears.lifecycle.container.ContainerState.stopped;
import static org.gcube.smartgears.provider.ProviderFactory.provider;
import java.io.File;
import java.io.FileOutputStream;
import java.io.ObjectOutputStream;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import org.gcube.common.authorization.client.exceptions.ObjectNotFound;
import org.gcube.common.authorization.client.proxy.AuthorizationProxy;
import org.gcube.common.authorization.library.AuthorizationEntry;
import org.gcube.common.authorization.library.provider.ClientInfo;
import org.gcube.common.authorization.library.provider.ContainerInfo;
import org.gcube.common.events.Observes;
import org.gcube.common.events.Observes.Kind;
import org.gcube.smartgears.configuration.container.ContainerHandlers;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.handlers.ProfileEvents;
import org.gcube.smartgears.handlers.container.ContainerHandler;
import org.gcube.smartgears.handlers.container.ContainerLifecycleEvent;
import org.gcube.smartgears.handlers.container.ContainerPipeline;
import org.gcube.smartgears.lifecycle.application.ApplicationLifecycle;
import org.gcube.smartgears.lifecycle.container.ContainerState;
import org.gcube.smartgears.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Coordinates management of the container as a gCube resource.
*
* @author Fabio Simeoni
*
*/
public class ContainerManager {
private static Logger log = LoggerFactory.getLogger(ContainerManager.class);
public static ContainerManager instance = new ContainerManager();
private AuthorizationProxy authProvider = provider().authorizationProxy();
private ContainerContext context;
private ContainerPipeline pipeline;
private ContainerManager() {}
/**
* Starts container management.
*/
public ContainerContext start(ContainerContext context) {
this.context = context;
try {
// TODO Ask if is not enough that is already done in
// Bootstrap.initialiseContainer() function;
context.configuration().validate();
validateContainer(context);
saveContainerState();
ContainerHandlers handlers = provider().containerHandlers();
log.trace("managing container lifecycle with {}", handlers.get());
startHandlers(handlers.get());
context.lifecycle().moveTo(active);
log.trace("loading keys for starting token ...");
//loadKeyForToken(context.configuration().startTokens());
log.trace("keys loaded for starting token ...");
return context;
}
catch(RuntimeException e) {
log.error("cannot manage container (see cause)",e);
if (context!=null)
context.lifecycle().moveTo(failed);
throw e;
}
}
private void saveContainerState() {
File file = context.configuration().persistence().file(container_profile_file_path);
try(ObjectOutputStream oos = new ObjectOutputStream(new FileOutputStream(file))){
oos.writeObject(context.id());
oos.writeObject(context.configuration().startTokens());
}catch (Exception e) {
log.error("error serializing cointainer state");
throw new RuntimeException(e);
}
}
private void validateContainer(ContainerContext context) {
List<String> tokensToRemove = new ArrayList<String>();
Set<String> foundContexts= new HashSet<String>();
for (String token : context.configuration().startTokens()){
String tokenContext = resolveTokenForAdd(foundContexts, token);
if (tokenContext!=null){
log.info("the container will be started in context {}",tokenContext);
foundContexts.add(tokenContext);
} else
tokensToRemove.add(token);
}
if (foundContexts.isEmpty()){
log.error("no valid starting token are specified, moving the container to failed");
throw new RuntimeException("no valid starting token are specified");
}
context.configuration().startTokens().removeAll(tokensToRemove);
context.configuration().allowedContexts(foundContexts);
}
private String resolveTokenForAdd(Set<String> alreadyAddedContext, String token){
try {
AuthorizationEntry entry = authProvider.get(token);
ClientInfo info = entry.getClientInfo();
log.info("resolved authorization entry for container {}",entry);
if (alreadyAddedContext.contains(entry.getContext())){
log.warn("the token {} cannot be used, another token with the same context {} found ", entry.getContext());
} else if(!entry.getContext().startsWith("/"+context.configuration().infrastructure())){
log.warn("the token {} cannot be used, is not in the infrastructure {} of the container ", token,context.configuration().infrastructure());
}else if (!(info instanceof ContainerInfo)){
log.warn("the token {} cannot be used, is not for a container token ", token);
} else if (!((ContainerInfo)info).getHost().equals(context.configuration().hostname())
|| context.configuration().port()!=((ContainerInfo)info).getPort()){
log.warn("the token {} cannot be used, the client id {} resolved with the token is not the same of the one specified in this container ", token, info.getId());
} else
return entry.getContext();
}catch(ObjectNotFound onf){
log.error("token {} not valid", token);
} catch (Exception e) {
log.error("error contacting authorization for token {}",token,e);
}
return null;
}
public void manage(ApplicationContext app) {
app.events().subscribe(this);
}
@Observes(value={ApplicationLifecycle.failure,ApplicationLifecycle.stop},kind=Kind.critical)
void monitorApplication(ApplicationLifecycle lifecycle) {
context.lifecycle().tryMoveTo(ContainerState.partActive);
}
@Observes(value=ContextEvents.ADD_TOKEN_TO_CONTAINER,kind=Kind.critical)
void addToken(String token) {
log.trace("adding token {} to container", token);
String newContext;
if ((newContext = resolveTokenForAdd(context.configuration().allowedContexts(), token))!=null) {
context.configuration().startTokens().add(token);
context.configuration().allowedContexts().add(newContext);
saveContainerState();
//loadKeyForToken(Arrays.asList(token));
context.events().fire(token, ContextEvents.ADD_TOKEN_TO_APPLICATION);
context.events().fire(token, ProfileEvents.addToContext);
log.trace("token added and event fired");
} else log.warn("trying to add an invalid token");
}
@Observes(value=ContextEvents.REMOVE_TOKEN_FROM_CONTAINER,kind=Kind.critical)
void removeToken(String token) {
log.trace("removing token {} from container", token);
AuthorizationEntry entry;
try {
entry = authProvider.get(token);
} catch (Exception e) {
log.error("error resolving token to remove");
return;
}
if (context.configuration().startTokens().contains(token)) {
context.configuration().startTokens().remove(token);
context.configuration().allowedContexts().remove(entry.getContext());
saveContainerState();
context.events().fire(token, ContextEvents.REMOVE_TOKEN_FROM_APPLICATION);
context.events().fire(token, ProfileEvents.removeFromContext);
log.trace("token removed and event fired");
} else log.warn("cannot remove token, it is not present in the container");
}
/**
* Stops container management on remote request.
*
*/
public void stop() {
stop(false);
}
/**
* Stops container management on remote request or container shutdown.
*
*/
public void stop(boolean shutdown) {
//two cases: stop-on-shutdown and stop-on-request, some listeners will be selective about this,
//shutdown is triggered by probe app, which is notified among other apps
//if other app have been already notified, the container may already be part-active.
//apps still to notify will listen only on stop, hence won't react to this but will go down when their turn arrives.
if (context == null)
return;
log.info("stopping container management");
try {
context.lifecycle().tryMoveTo(shutdown?down:stopped);
stopHandlers();
//no further reactions
log.info("stopping container events");
context.events().stop();
Utils.scheduledServicePool.shutdownNow();
}
catch (RuntimeException e) {
log.warn("cannot stop container management (see cause)", e);
}
}
//helpers
private void startHandlers(List<ContainerHandler> handlers) {
try {
pipeline = new ContainerPipeline(handlers);
pipeline.forward(new ContainerLifecycleEvent.Start(context));
} catch (RuntimeException e) {
context.lifecycle().tryMoveTo(failed);
throw e;
}
}
private void stopHandlers() {
if (pipeline == null)
return;
// copy pipeline, flip it, and
ContainerPipeline returnPipeline = pipeline.reverse();
// start lifetime pipeline in inverse order with stop event
returnPipeline.forward(new ContainerLifecycleEvent.Stop(context));
}
/*
private void loadKeyForToken(List<String> tokens) {
String initialToken = SecurityTokenProvider.instance.get();
//TODO: change this
String filePath = "/tmp/keys";
File PathDirs = new File(filePath+"/");
PathDirs.mkdirs();
try{
for (String token : tokens) {
try{
SecurityTokenProvider.instance.set(token);
File key = authProvider.getSymmKey(filePath);
log.trace("loading key {} file name ",key.getAbsolutePath());
log.trace("loaded key {} file name ",key.getAbsolutePath());
}catch(Exception e){
log.warn("error loading key for token {}", token, e);
}
}
loadFileIntoClasspath(PathDirs);
}finally{
SecurityTokenProvider.instance.set(initialToken);
}
}
private void loadFileIntoClasspath(File file){
try {
URL url = file.toURI().toURL();
ClassLoader currentClassloader = Thread.currentThread().getContextClassLoader().getParent()==null?
Thread.currentThread().getContextClassLoader() : Thread.currentThread().getContextClassLoader().getParent();
URLClassLoader classLoader = (URLClassLoader)currentClassloader;
Method method = URLClassLoader.class.getDeclaredMethod("addURL", URL.class);
method.setAccessible(true);
method.invoke(classLoader, url);
} catch (Exception ex) {
log.error("error loading file into classpath",ex);
}
}
*/
}

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package org.gcube.smartgears.managers;
public class ContextEvents {
public static final String ADD_TOKEN_TO_CONTAINER ="AddTokenToContainer";
public static final String ADD_TOKEN_TO_APPLICATION ="AddTokenToApplication";
public static final String REMOVE_TOKEN_FROM_CONTAINER ="RemoveTokenFromContainer";
public static final String REMOVE_TOKEN_FROM_APPLICATION ="RemoveTokenFromApplication";
}

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package org.gcube.smartgears.managers;
import static org.gcube.smartgears.Constants.*;
import static org.gcube.smartgears.handlers.application.request.RequestError.*;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import javax.servlet.Filter;
import javax.servlet.FilterChain;
import javax.servlet.FilterConfig;
import javax.servlet.ServletException;
import javax.servlet.ServletRequest;
import javax.servlet.ServletResponse;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.smartgears.configuration.application.Exclude;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.context.application.DefaultApplicationContext;
import org.gcube.smartgears.handlers.application.ApplicationPipeline;
import org.gcube.smartgears.handlers.application.RequestEvent;
import org.gcube.smartgears.handlers.application.RequestHandler;
import org.gcube.smartgears.handlers.application.ResponseEvent;
import org.gcube.smartgears.handlers.application.request.RequestError;
import org.gcube.smartgears.handlers.application.request.RequestException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* A {@link Filter} that executes a {@link ApplicationPipeline} of {@link RequestHandler}s before and a client request is delivered
* to a given servlet and before the response produced by the servlet is returned to the client.
*
* @author Fabio Simeoni
*
*/
public class RequestManager implements Filter {
private static Logger log = LoggerFactory.getLogger(RequestManager.class);
private final ApplicationContext context;
private final String servlet;
private final List<RequestHandler> handlers;
/**
* Creates an instance with the name of the target servlet and a pipeline.
*
* @param servlet the name of the servlet
* @param pipeline the pipeline
*/
public RequestManager(ApplicationContext context, String servletName, List<RequestHandler> handlers) {
this.context = context;
this.servlet = servletName;
this.handlers = handlers;
}
@Override
public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) throws IOException,
ServletException {
HttpServletRequest httprequest = (HttpServletRequest) request;
HttpServletResponse httpresponse = (HttpServletResponse) response;
List<RequestHandler> filterHandlers = getPipelineWithExcluded(httprequest, handlers);
if (filterHandlers.isEmpty())
chain.doFilter(request, response);
else {
ApplicationPipeline<RequestHandler> pipeline = new ApplicationPipeline<RequestHandler>(filterHandlers);
// create a per-request context with temporary properties
ApplicationContext ctx = new DefaultApplicationContext(context);
RequestEvent event = new RequestEvent(servlet, ctx, httprequest,httpresponse);
try {
pipeline.forward(event);
}
catch(Throwable t) {
handleError(httprequest,httpresponse,t);
return;
}
try{
// dispatch to other filters for this servlet
chain.doFilter(request, response);
}catch(Throwable t){
t.printStackTrace();
handleError(httprequest,httpresponse,t);
}
ResponseEvent responseEvent = new ResponseEvent(servlet, ctx, httprequest, httpresponse);
try {
pipeline.reverse().forward(responseEvent);
}
catch(Throwable t) {
t.printStackTrace();
handleError(httprequest,httpresponse,t);
return;
}
}
}
private List<RequestHandler> getPipelineWithExcluded(
HttpServletRequest request, List<RequestHandler> handlersToFilter) {
String query = request.getQueryString();
log.debug("servletPath is {} and pathInfo is {}",request.getServletPath(), request.getPathInfo());
if ("wsdl".equals(query) || "wsdl=1".equals(query))
return Collections.emptyList();
String path = request.getServletPath()==null?"":request.getServletPath();
path += request.getPathInfo() ==null?"":request.getPathInfo();
log.debug("check wich handler should be excluded {}", path);
for (Exclude exclude : context.configuration().excludes()){
String excludePath= exclude.getPath();
log.trace("exclude is {}",exclude);
if (
(EXCLUDE_ALL).equals(exclude) ||
(excludePath.endsWith(EXCLUDE_ALL) && path!=null && path.startsWith(excludePath.substring(0,excludePath.length()-2))) ||
excludePath.equals(path) || (path.endsWith("/") && excludePath.equals(path.substring(0, path.length()-1)))
){
//ALL handler are filtered
if (exclude.getHandlers().isEmpty()) return Collections.emptyList();
List<RequestHandler> filteredHandlers = new ArrayList<>();
for (RequestHandler rh : filteredHandlers)
if (!exclude.getHandlers().contains(rh.getName()))
filteredHandlers.add(rh);
return filteredHandlers;
}
}
//in case no path is recognized in excludes it return all handlers
return handlersToFilter;
}
@Override
public void init(FilterConfig filterConfig) throws ServletException {
// propagate filter initialisation to handler
try {
for (RequestHandler handler : this.handlers)
handler.start(context);
} catch (Throwable t) {
throw new ServletException(t);
}
}
@Override
public void destroy() {
for (RequestHandler handler : this.handlers)
try {
handler.stop();
} catch (Throwable t) {
log.error("cannot terminate handler {} for application {} ", handler, context.name());
}
}
// helpers
/*
private boolean shouldExcludeRequest(HttpServletRequest request) {
String query = request.getQueryString();
log.debug("servletPath is {} and pathInfo is {}",request.getServletPath(), request.getPathInfo());
if ("wsdl".equals(query) || "wsdl=1".equals(query))
return true;
String path = request.getServletPath()==null?"":request.getServletPath();
path += request.getPathInfo() ==null?"":request.getPathInfo();
log.debug("check if should exclude call with path {}", path);
for (Exclude exclude : context.configuration().excludes()){
if (!exclude.getHandlers().isEmpty()) continue;
String excludePath= exclude.getPath();
log.trace("exclude is {}",exclude);
if (
(EXCLUDE_ALL).equals(exclude) ||
(excludePath.endsWith(EXCLUDE_ALL) && path!=null && path.startsWith(excludePath.substring(0,excludePath.length()-2))) ||
excludePath.equals(path) || (path.endsWith("/") && excludePath.equals(path.substring(0, path.length()-1)))
)
return true;
}
return false;
}*/
private void handleError(HttpServletRequest request, HttpServletResponse response,Throwable t) throws IOException {
RequestError error = t instanceof RequestException?
RequestException.class.cast(t).error():
application_error;
if (error == application_error) {
response.sendError(error.code(),error.message());
}else {
if (error == request_not_authorized_error){
response.setHeader("WWW-Authenticate", "Basic realm=\"Smartgears\"");
log.info("setting WWW-Authenticate to response header");
}
response.getWriter().write("Error ("+error.code()+") : "+error.message()+"\nStacktrace:\n");
t.printStackTrace(response.getWriter());
response.setStatus(error.code());
}
}
}

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package org.gcube.smartgears.persistence;
import static org.gcube.smartgears.utils.Utils.*;
import java.io.File;
import javax.xml.bind.Unmarshaller;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlRootElement;
import org.gcube.common.validator.annotations.NotNull;
@XmlRootElement(name="persistence")
public class DefaultPersistence implements Persistence {
@XmlAttribute(name="location") @NotNull
private String location;
public DefaultPersistence() {}
public DefaultPersistence(String location) {
notNull("persistence location",location);
this.location=location;
validate();
}
@Override
public String location() {
return location;
}
@Override
public File writefile(String path) {
notNull("relative path", path);
return fileAt(new File(location, path).getAbsolutePath()).toWrite();
}
@Override
public File file(String path) {
notNull("relative path", path);
return fileAt(new File(location, path).getAbsolutePath()).toRead();
}
//called after JAXB unmarshalling to purge unavailable handlers
void afterUnmarshal(Unmarshaller u, Object parent) {
validate();
}
public void validate() {
File locationDir = new File(location);
if (!(locationDir.exists() && locationDir.isDirectory() && locationDir.canRead() && locationDir.canWrite()))
throw new IllegalStateException("invalid node configuration: home "+location+" does not exist or is not a directory or cannot be accessed in read/write mode");
}
@Override
public int hashCode() {
final int prime = 31;
int result = 1;
result = prime * result + ((location == null) ? 0 : location.hashCode());
return result;
}
@Override
public boolean equals(Object obj) {
if (this == obj)
return true;
if (obj == null)
return false;
if (getClass() != obj.getClass())
return false;
DefaultPersistence other = (DefaultPersistence) obj;
if (location == null) {
if (other.location != null)
return false;
} else if (!location.equals(other.location))
return false;
return true;
}
@Override
public String toString() {
return "local persistence in "+location;
}
}

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package org.gcube.smartgears.persistence;
import java.io.File;
public interface Persistence {
String location();
File file(String path);
File writefile(String path);
}

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package org.gcube.smartgears.probe;
import javax.servlet.ServletContextListener;
import javax.servlet.annotation.WebListener;
import org.gcube.smartgears.managers.ContainerManager;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@WebListener
public class ContainerListener implements ServletContextListener {
public static Logger log = LoggerFactory.getLogger(ContainerListener.class);
public void contextDestroyed(javax.servlet.ServletContextEvent sce) {
log.trace("shutting down container from probe");
ContainerManager.instance.stop(true);
};
public void contextInitialized(javax.servlet.ServletContextEvent sce) {
log.trace("starting up probe...");
};
}

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package org.gcube.smartgears.provider;
import static org.gcube.common.authorization.client.Constants.authorizationService;
import static org.gcube.smartgears.Constants.configuration_file_path;
import static org.gcube.smartgears.Constants.container_configuraton_file_path;
import static org.gcube.smartgears.Constants.container_handlers_file_path;
import static org.gcube.smartgears.Constants.container_profile_file_path;
import static org.gcube.smartgears.Constants.default_extensions_file_path;
import static org.gcube.smartgears.Constants.default_handlers_file_path;
import static org.gcube.smartgears.Constants.extensions_file_path;
import static org.gcube.smartgears.Constants.ghn_home_env;
import static org.gcube.smartgears.Constants.ghn_home_property;
import static org.gcube.smartgears.Constants.handlers_file_path;
import static org.gcube.smartgears.Constants.library_configuration_file_path;
import static org.gcube.smartgears.Constants.profile_file_path;
import java.io.File;
import java.io.FileInputStream;
import java.io.InputStream;
import java.io.ObjectInputStream;
import java.util.List;
import java.util.UUID;
import javax.servlet.ServletContext;
import org.gcube.common.authorization.client.proxy.AuthorizationProxy;
import org.gcube.common.events.Hub;
import org.gcube.common.events.impl.DefaultHub;
import org.gcube.informationsystem.publisher.RegistryPublisherFactory;
import org.gcube.informationsystem.publisher.ScopedPublisher;
import org.gcube.smartgears.configuration.Mode;
import org.gcube.smartgears.configuration.application.ApplicationConfiguration;
import org.gcube.smartgears.configuration.application.ApplicationConfigurationBinder;
import org.gcube.smartgears.configuration.application.ApplicationExtensions;
import org.gcube.smartgears.configuration.application.ApplicationHandlers;
import org.gcube.smartgears.configuration.application.BridgedApplicationConfiguration;
import org.gcube.smartgears.configuration.container.ContainerConfiguration;
import org.gcube.smartgears.configuration.container.ContainerConfigurationBinder;
import org.gcube.smartgears.configuration.container.ContainerHandlers;
import org.gcube.smartgears.configuration.library.SmartGearsConfiguration;
import org.gcube.smartgears.configuration.library.SmartGearsConfigurationBinder;
import org.gcube.smartgears.context.Properties;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.context.application.DefaultApplicationContext;
import org.gcube.smartgears.context.container.ContainerContext;
import org.gcube.smartgears.context.container.DefaultContainerContext;
import org.gcube.smartgears.lifecycle.application.ApplicationLifecycle;
import org.gcube.smartgears.lifecycle.container.ContainerLifecycle;
import org.gcube.smartgears.persistence.DefaultPersistence;
import org.gcube.smartgears.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Default implementation of the {@link Provider} interface.
*
* @author Fabio Simeoni
*
*/
public class DefaultProvider implements Provider {
private static Logger log = LoggerFactory.getLogger(Provider.class);
private ContainerContext containerContext;
//TODO: do the same with applicationContext (with a map)
protected DefaultProvider(){};
@SuppressWarnings("unchecked")
@Override
public ContainerContext containerContext() {
if(containerContext==null){
ContainerConfiguration configuration = containerConfiguration();
if (configuration.persistence()==null) {
String location = Utils.home()+"/state";
File dir = new File(location);
if (!dir.exists())
dir.mkdirs();
configuration.persistence(new DefaultPersistence(location));
log.trace("setting persistence location for container @ {}",dir.getAbsolutePath());
}
Hub hub = new DefaultHub();
ContainerLifecycle lifecycle = new ContainerLifecycle(hub);
File file = configuration.persistence().file(container_profile_file_path);
String id = null;
List<String> tokens = null;
if (file.exists()){
log.info("loading persisted state for container");
try(ObjectInputStream ois = new ObjectInputStream(new FileInputStream(file))){
id = (String)ois.readObject();
tokens = (List<String>) ois.readObject();
}catch(Exception e){
log.error("error loading persisted state, creating new uuid",e);
}
}
if (id==null){
id = UUID.randomUUID().toString();
log.info("container id created is {}",id);
}
if (tokens!=null)
configuration.startTokens(tokens);
containerContext = new DefaultContainerContext(id, configuration, hub, lifecycle, new Properties());
}
return containerContext;
}
@Override
public ContainerHandlers containerHandlers() {
try {
InputStream config = getClass().getResourceAsStream(container_handlers_file_path);
if (config == null)
throw new IllegalStateException("invalid distribution: cannot find " + container_handlers_file_path);
ContainerConfigurationBinder binder = new ContainerConfigurationBinder();
return binder.bindHandlers(config);
} catch (RuntimeException e) {
throw new RuntimeException("cannot install container handlers (see cause) ", e);
}
}
@Override
public ApplicationContext contextFor(ContainerContext context, ServletContext application) {
ApplicationConfiguration configuration = null;
ApplicationConfiguration embedded = configurationFor(application);
ApplicationConfiguration external = context.configuration().app(application.getContextPath());
//shouldn't happen: management shouldn't have started at all
if (embedded==null && external==null)
throw new AssertionError("application @ "+application.getContextPath()+" is not distributed with "
+ configuration_file_path+" and there is no external configuration for it in "+container_configuraton_file_path);
//no embedded configuration
if (embedded == null) {
configuration = external ;
log.info("loaded configuration for application "+configuration.name()+" from "+container_configuraton_file_path);
}
else {
configuration = embedded;
if (external == null)
log.info("loaded configuration for application "+configuration.name()+" from "+configuration_file_path);
else {
configuration.merge(external);
log.info("loaded configuration for application "+configuration.name()+" from "+configuration_file_path+" and "+container_configuraton_file_path);
}
}
// TODO we can check scopes here instead of in BridgedApplicationConfiguration constructor
ApplicationConfiguration bridgedConfiguration = new BridgedApplicationConfiguration(context.configuration(),
configuration);
Hub hub = new DefaultHub();
ApplicationLifecycle lifecycle = new ApplicationLifecycle(hub, configuration.name());
File file = bridgedConfiguration.persistence().file(profile_file_path);
String id= null;
if (file.exists()){
log.info("loading persisted state for application {}", application.getContextPath());
try(ObjectInputStream ois = new ObjectInputStream(new FileInputStream(file))){
id = (String)ois.readObject();
}catch(Exception e){
log.error("error loading persisted state, creating new uuid",e);
}
}
if (id==null)
id = UUID.randomUUID().toString();
return new DefaultApplicationContext(id, context, application, bridgedConfiguration, hub, lifecycle,
new Properties());
}
@Override
public ApplicationHandlers handlersFor(ApplicationContext context) {
try {
InputStream config = context.application().getResourceAsStream(handlers_file_path);
if (config == null) {
log.trace("{} uses the default lifecycle as it does not include {}", context.name(), handlers_file_path);
// it's in a library, using
config = getClass().getResourceAsStream(default_handlers_file_path);
if (config == null)
throw new IllegalStateException("invalid distribution: cannot find " + default_handlers_file_path);
} else
log.info("{} uses a custom lifecycle @ {}", context.name(), handlers_file_path);
ApplicationConfigurationBinder binder = new ApplicationConfigurationBinder();
return binder.bindHandlers(config);
} catch (RuntimeException e) {
throw new RuntimeException("cannot install handlers for application @ " + context.name()+" (see cause) ", e);
}
}
@Override
public ApplicationExtensions extensionsFor(ApplicationContext context) {
try {
InputStream config = context.application().getResourceAsStream(extensions_file_path);
if (config == null) {
log.trace("{} uses default extensions as it does not include {}", context.name(), extensions_file_path);
// it's in a library, using
config = getClass().getResourceAsStream(default_extensions_file_path);
if (config == null)
throw new IllegalStateException("invalid distribution: cannot find " + default_extensions_file_path);
} else
log.info("{} uses custom extensions @ {}", context.name(), extensions_file_path);
ApplicationConfigurationBinder binder = new ApplicationConfigurationBinder();
return binder.bindExtensions(config);
} catch (RuntimeException e) {
throw new RuntimeException("cannot install extensions for application @ " + context.name()+" (see cause) ", e);
}
}
@Override
public SmartGearsConfiguration smartgearsConfiguration() {
try {
InputStream config = getClass().getResourceAsStream(library_configuration_file_path);
if (config == null)
throw new IllegalStateException("invalid distribution: cannot find " + library_configuration_file_path);
SmartGearsConfigurationBinder binder = new SmartGearsConfigurationBinder();
SmartGearsConfiguration configuration = binder.bind(config);
configuration.validate();
return configuration;
} catch (RuntimeException e) {
throw new RuntimeException("cannot read library configuration (see cause) ", e);
}
}
// helpers
private ApplicationConfiguration configurationFor(ServletContext application) {
try {
InputStream config = application.getResourceAsStream(configuration_file_path);
if (config == null)
return null;
ApplicationConfigurationBinder binder = new ApplicationConfigurationBinder();
return binder.bind(config);
} catch (RuntimeException e) {
throw new RuntimeException("invalid configuration (see cause)", e);
}
}
private ContainerConfiguration containerConfiguration() {
String home = Utils.home();
if (home == null)
throw new IllegalStateException("invalid node configuration: the environment variable " + ghn_home_env
+ " or the system property " + ghn_home_property + " must be defined");
File homeDir = new File(home);
if (!(homeDir.exists() && homeDir.isDirectory() && homeDir.canRead() && homeDir.canWrite()))
throw new IllegalStateException("invalid node configuration: home "+home+" does not exist or is not a directory or cannot be accessed in read/write mode");
File config = new File(homeDir,container_configuraton_file_path);
if (!(config.exists() && config.canRead()))
throw new IllegalStateException("invalid node configuration: file "+config.getAbsolutePath()+" does not exist or cannot be accessed");
log.trace("reading container configuration @ {} ", config.getAbsolutePath());
ContainerConfigurationBinder binder = new ContainerConfigurationBinder();
FileInputStream stream = null;
try {
stream = new FileInputStream(config);
}
catch(Exception e) {
throw new RuntimeException("unexpected exception reading container configuration file see cause)",e);
}
ContainerConfiguration configuration = binder.bind(stream);
try {
stream.close();
}
catch(Exception e) {
log.warn("could not close stream when reading container configuration @ "+config.getAbsolutePath()+" (see cause)",e);
}
return configuration;
}
/*
@Override
public RegistryPublisher publisherFor(ContainerContext context) {
return context.configuration().mode()==Mode.online?
RegistryPublisherFactory.create(): new OfflinePublisher();
}
@Override
public RegistryPublisher publisherFor(ApplicationContext context) {
return context.configuration().mode()==Mode.online?
RegistryPublisherFactory.create(): new OfflinePublisher();
}*/
@Override
public ScopedPublisher publisherFor(ContainerContext context) {
return context.configuration().mode()==Mode.online? RegistryPublisherFactory.scopedPublisher()
: new OfflinePublisher();
}
@Override
public ScopedPublisher publisherFor(ApplicationContext context) {
return context.configuration().mode()==Mode.online? RegistryPublisherFactory.scopedPublisher()
: new OfflinePublisher();
}
@Override
public AuthorizationProxy authorizationProxy() {
return authorizationService();
}
}

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@ -0,0 +1,56 @@
package org.gcube.smartgears.provider;
import java.lang.reflect.Method;
import java.util.List;
import org.gcube.common.resources.gcore.Resource;
import org.gcube.informationsystem.publisher.ScopedPublisher;
import org.gcube.informationsystem.publisher.exception.RegistryNotFoundException;
import org.gcube.smartgears.configuration.Mode;
/**
* An implementation of {@link ScopedPublisher} that simulates remote publication.
* <p>
* Used for applications and or containers that operate in {@link Mode#offline}.
*
* @author Fabio Simeoni
*
*/
public class OfflinePublisher implements ScopedPublisher {
@Override
public <T extends Resource> T update(T resource){
// do nothing
return resource;
}
@Override
public <T extends Resource> T create(T resource, List<String> scopes)
throws RegistryNotFoundException {
// fragile! bypass restrictions reflectively and set new scope
for (String scope : scopes)
try {
Method m = resource.getClass().getSuperclass().getDeclaredMethod("addScope", String.class);
m.setAccessible(true);
m.invoke(resource, scope);
} catch (Exception e) {
throw new RuntimeException("could not simulate publication in scope " + scope, e);
}
return resource;
}
@Override
public <T extends Resource> T remove(T resource, List<String> scopes)
throws RegistryNotFoundException {
for (String scope : scopes)
try {
Method m = resource.getClass().getSuperclass().getDeclaredMethod("removeScope", String.class);
m.setAccessible(true);
m.invoke(resource, scope);
} catch (Exception e) {
throw new RuntimeException("could not simulate publication remove from scope " + scope, e);
}
return resource;
}
}

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package org.gcube.smartgears.provider;
import javax.servlet.ServletContext;
import org.gcube.common.authorization.client.proxy.AuthorizationProxy;
import org.gcube.informationsystem.publisher.ScopedPublisher;
import org.gcube.smartgears.configuration.application.ApplicationExtensions;
import org.gcube.smartgears.configuration.application.ApplicationHandlers;
import org.gcube.smartgears.configuration.container.ContainerHandlers;
import org.gcube.smartgears.configuration.library.SmartGearsConfiguration;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.context.container.ContainerContext;
/**
* Provides dependencies for container and application management.
*
* @author Fabio Simeoni
*
*/
public interface Provider {
//container-level dependencies
/**
* Returns the runtime properties.
* @return the properties.
*/
SmartGearsConfiguration smartgearsConfiguration();
/**
* Assembles and returns the context of the container.
* @return the container's context
*/
ContainerContext containerContext();
/**
* Returns the handlers associated with the container.
* @return the handlers
*/
ContainerHandlers containerHandlers();
/**
* Returns an implementation of the IS publisher for the container
* @param application the context of the container
* @return the publisher implementation
*/
ScopedPublisher publisherFor(ContainerContext application);
//application-level dependencies
/**
* Assembles and returns the context of a given application.
* @param container the context of the container
* @param application the servlet context of the application
* @return
*/
ApplicationContext contextFor(ContainerContext container,ServletContext application);
/**
* Returns the handlers associated with a given application.
* @param application the context of the application
* @return the handlers
*/
ApplicationHandlers handlersFor(ApplicationContext application);
/**
* Returns the API extensions associated with a given application.
* @param application the context of the application
* @return the extensions
*/
ApplicationExtensions extensionsFor(ApplicationContext application);
/**
* Returns an implementation of the IS publisher for a given application
* @param application the context of the application
* @return the publisher implementation
*/
ScopedPublisher publisherFor(ApplicationContext application);
/**
* Returns an implementation of the IS publisher for a given application
* @param application the context of the application
* @return the publisher implementation
*/
AuthorizationProxy authorizationProxy();
}

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package org.gcube.smartgears.provider;
public class ProviderFactory {
private static Provider provider = new DefaultProvider();
public static Provider provider() {
return provider;
}
public static void testProvider(Provider provider) {
ProviderFactory.provider=provider;
}
}

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@ -0,0 +1,17 @@
package org.gcube.smartgears.utils;
import java.util.Collection;
public class ScopeEvent {
private Collection<String> scopes;
public ScopeEvent(Collection<String> scopes) {
super();
this.scopes = scopes;
}
public Collection<String> getScopes() {
return scopes;
}
}

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package org.gcube.smartgears.utils;
import static org.gcube.smartgears.Constants.ghn_home_env;
import static org.gcube.smartgears.Constants.ghn_home_property;
import static org.gcube.smartgears.handlers.application.request.RequestError.application_error;
import java.io.BufferedReader;
import java.io.BufferedWriter;
import java.io.Closeable;
import java.io.File;
import java.io.FileReader;
import java.io.FileWriter;
import java.io.Flushable;
import java.io.IOException;
import java.util.Collection;
import java.util.concurrent.Executors;
import java.util.concurrent.ScheduledExecutorService;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.gcube.common.authorization.library.provider.ServiceIdentifier;
import org.gcube.common.authorization.library.provider.ServiceInfo;
import org.gcube.smartgears.context.application.ApplicationContext;
import org.gcube.smartgears.handlers.application.request.RequestError;
import org.gcube.smartgears.handlers.application.request.RequestException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Library-wide utils.
*
* @author Fabio Simeoni
*
*/
public class Utils {
private static final Logger log = LoggerFactory.getLogger(Utils.class);
public static final ScheduledExecutorService scheduledServicePool = Executors.newScheduledThreadPool(10);
public static RuntimeException unchecked(Throwable t) {
return (t instanceof RuntimeException) ? RuntimeException.class.cast(t) : new RuntimeException(t.getMessage(),
t);
}
public static String smartgearsVersion() {
return "1.0.0"; // @TODO
}
public static void rethrowUnchecked(Throwable t) throws RuntimeException {
throw unchecked(t);
}
public static void closeSafely(Closeable c) {
if (c != null) {
try {
if (c instanceof Flushable)
Flushable.class.cast(c).flush();
c.close();
} catch (IOException e) {
log.error("could not close {} due to error {}: msg{}", c, e.getClass().getSimpleName(), e.getMessage());
}
}
}
public static void valid(String name, Object[] o) throws IllegalArgumentException {
notNull(name, o);
}
public static void notNull(Object[] o) throws IllegalArgumentException {
notNull("argument", o);
}
public static void notNull(String name, Object o) throws IllegalArgumentException {
if (o == null)
throw new IllegalArgumentException(name + " is null");
}
public static void notEmpty(String name, String o) throws IllegalArgumentException {
notNull(name, o);
if (o.isEmpty())
throw new IllegalArgumentException(name + " is empty");
}
public static void notEmpty(String name, Object[] o) throws IllegalArgumentException {
notNull(name, o);
if (o.length == 0)
throw new IllegalArgumentException(name + " is empty");
}
public static void notEmpty(String name, Collection<?> o) throws IllegalArgumentException {
notNull(name, o);
if (o.isEmpty())
throw new IllegalArgumentException(name + " is empty");
}
public static void valid(String name, String o) throws IllegalArgumentException {
notNull(name, o);
notEmpty(name, o);
}
public static String home() {
String home = System.getenv(ghn_home_env);
if (home == null)
home = System.getProperty(ghn_home_property);
return home;
}
public static void handleError(HttpServletRequest request, HttpServletResponse response, Throwable t)
throws IOException {
RequestError error = t instanceof RequestException ? RequestException.class.cast(t).error() : application_error;
if (error == application_error) {
response.getWriter().write("Error (" + error.code() + ") : " + t.getMessage() + "\nStacktrace:\n");
t.printStackTrace(response.getWriter());
response.setStatus(error.code());
} else
response.sendError(error.code(), t.getMessage());
}
public static interface ModeClause {
File toRead();
File toWrite();
}
public static ModeClause fileAt(final String path) {
notNull("file path",path);
return new ModeClause() {
@Override
public File toWrite() {
return file(path,true);
}
@Override
public File toRead() {
return file(path,false);
}
};
}
private static File file(String path, boolean writeMode) throws IllegalArgumentException {
File file = new File(path);
if (!writeMode)
if (!file.exists() || file.length() == 0 || !file.canRead()) {
File backup = new File(file.getAbsolutePath() + ".backup");
if (backup.exists())
if (!backup.renameTo(file)) {
log.warn("accessing directly backup {} as it cannot be renamed to {}", backup.getAbsolutePath(), file.getAbsolutePath());
return backup; //bets effort:read from backup
}
else {
log.info("cannot read {} but can access its backup {}", backup.getAbsolutePath(), file.getAbsolutePath());
return file;
}
}
if (file.isDirectory())
throw new IllegalArgumentException(path + " cannot be used in write mode because it's folder");
//create folder structure it does not exist
if (!file.getParentFile().exists())
file.getParentFile().mkdirs();
else
if (file.exists())
try (
BufferedReader reader = new BufferedReader(new FileReader(file));
BufferedWriter writer = new BufferedWriter(new FileWriter(new File(file.getAbsolutePath() + ".backup")));
)
{
String line;
while ((line = reader.readLine()) != null)
writer.write(line);
}
catch (Exception e) {
log.warn("cannot back up "+file.getAbsolutePath()+" on writing ", e);
}
return file;
}
public static ServiceInfo getServiceInfo(ApplicationContext application){
String hostedin = String.format("%s_%d", application.container().configuration().hostname(), application.container().configuration().port());
return
new ServiceInfo(new ServiceIdentifier(application.configuration().serviceClass(), application.configuration().name(), hostedin));
}
}

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<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<handlers>
<accounting-management />
<profile-management />
</handlers>

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<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<extensions>
<remote-management/>
</extensions>

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@ -0,0 +1,10 @@
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<handlers>
<lifecycle>
<profile-management />
</lifecycle>
<request>
<request-validation />
<request-accounting />
</request>
</handlers>

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<?xml version="1.0" encoding="iso-8859-1"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>${name}</title>
<style type="text/css">
body {
background-color: rgb(227, 227, 227);
color: rgb(18, 132, 194);
padding: 0;
margin: 0;
font-family: 'HelveticaNeue-UltraLight', 'Helvetica Neue', 'Arial', sans-serif;
}
a:link {color: rgb(69, 114, 132); text-decoration:none}
a:hover {color: rgb(18, 132, 194);}
#top, #bottom {
background-color: rgb(218, 218, 218);
}
#container {
width: 906px;
margin-left: 60px;
margin-top: 10px;
margin-top: 5px;
}
#top {
padding-left: 16px;
}
#top h1, #top h2 {
width:99%;
font-weight: normal;
margin: 0 0;
}
#top h1 {
font-size: 65px;
padding-top: 16px;
}
#top h2 {
font-size: 25px;
color: rgb(69, 114, 132);
}
#middle {
min-height: 300px;
padding: 1em;
padding-top: 40px;
padding-left: 30px;
}
#middle p {
font-size: 25px;
margin-top: 0;
margin-bottom: 0;
padding-top: .2em;
padding-bottom: .2em;
color: rgb(69, 114, 132);
}
#middle p em {
color: rgb(18, 132, 194);
font-family: HelveticaNeue-Light, 'Helvetica Neue', Arial, sans-serif;
font-style: normal;
font-variant: normal;
font-weight: 300;
}
#bottom {
padding-top: 2px;
}
.half {
width: 49%;
}
.left {
text-align: left;
}
.right {
text-align: right;
}
.toolbar, .footer {
vertical-align: middle;
display: inline-block;
}
</style>
</head>
<body>
<div id="container">
<div id="top">
<h1>${name}</h1>
<h2>v.${version}</h2>
<h2 style="text-align:right">managed by <a href="http://www.gcube-system.org">gCube</a></h2>
</div>
<div id="middle">
<p>Welcome to <em>${name}</em>,</p>
<p>a resource of the <em>${infra}</em> infrastructure shared in <em>${vos}</em> VOs.</p>
<p style="padding-top:30px">The resource is <em>${status}</em>.</p>
</div>
<div id="bottom">
<span class="toolbar half left">
<a href="${profile_link}">
<img alt="profile" src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACAAAAAeCAYAAABNChwpAAAKQWlDQ1BJQ0MgUHJvZmlsZQAASA2d
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</a>
<a href="${config_link}">
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</span>
<span class="footer half right">SmartGears ${smartgears-version}</span>
</div>
</div>
</body>
</html>

View File

@ -0,0 +1 @@
org.gcube.smartgears.Bootstrap

View File

@ -0,0 +1 @@
org.gcube.smartgears.extensions.resource.RemoteResource

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