Compare commits
44 Commits
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@ -1,11 +1,11 @@
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eclipse.preferences.version=1
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org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
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org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
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org.eclipse.jdt.core.compiler.compliance=1.7
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org.eclipse.jdt.core.compiler.compliance=1.8
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||||
org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
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||||
org.eclipse.jdt.core.compiler.problem.enablePreviewFeatures=disabled
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||||
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
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||||
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
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||||
org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=ignore
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org.eclipse.jdt.core.compiler.release=disabled
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org.eclipse.jdt.core.compiler.source=1.7
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org.eclipse.jdt.core.compiler.source=1.8
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|
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21
CHANGELOG.md
21
CHANGELOG.md
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@ -4,6 +4,27 @@
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All notable changes to this project will be documented in this file.
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This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [v1.1.4] - 2023-12-21
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- Fixing `publication_date` issue [#26166]
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## [v1.1.3] - 2023-07-25
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- Fixing `null` issue, recompiling this component [#25275]
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## [v1.1.2] - 2022-10-27
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**Enhancements**
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- [#24038] Moved to GWT 2.9.0
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- Moved to maven-portal-bom 3.6.4
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## [v1.1.0] - 2021-10-05
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**New Features**
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[#19988] Integrated with `checkEnvironment` reporting the status of "Upload to Zenodo" facility
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Moved to `maven-portal-bom` 3.6.3
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## [v1.0.2] - 2021-04-26
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**Bug fixes**
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34
pom.xml
34
pom.xml
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@ -7,15 +7,14 @@
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<parent>
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<artifactId>maven-parent</artifactId>
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<groupId>org.gcube.tools</groupId>
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<version>1.1.0</version>
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<version>1.2.0</version>
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<relativePath />
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</parent>
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<groupId>org.gcube.portlets.widgets</groupId>
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<artifactId>ckan2zenodo-publisher-widget</artifactId>
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<packaging>jar</packaging>
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<version>1.0.2</version>
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<version>1.1.4</version>
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<description>
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gCube Ckan2Zenodo Publisher widget allows to publish D4Science catalogue's items on Zenodo
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@ -31,10 +30,10 @@
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<properties>
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<!-- Convenience property to set the GWT version -->
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<gwtVersion>2.7.0</gwtVersion>
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<gwtVersion>2.10.0</gwtVersion>
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<!-- GWT needs at least java 1.6 -->
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<maven.compiler.source>1.7</maven.compiler.source>
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<maven.compiler.source>1.8</maven.compiler.source>
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<maven.compiler.target>1.8</maven.compiler.target>
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<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
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</properties>
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@ -44,7 +43,7 @@
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<dependency>
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<groupId>org.gcube.distribution</groupId>
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<artifactId>maven-portal-bom</artifactId>
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<version>3.6.1</version>
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<version>3.6.4</version>
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<type>pom</type>
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<scope>import</scope>
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</dependency>
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@ -58,6 +57,18 @@
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<version>${gwtVersion}</version>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>com.google.gwt</groupId>
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<artifactId>gwt-servlet</artifactId>
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<version>${gwtVersion}</version>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>com.google.gwt</groupId>
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<artifactId>gwt-dev</artifactId>
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<version>${gwtVersion}</version>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>com.github.gwtbootstrap</groupId>
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<artifactId>gwt-bootstrap</artifactId>
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@ -65,7 +76,7 @@
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<dependency>
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<groupId>org.gcube.portlets.widgets</groupId>
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<artifactId>switch-button-widget</artifactId>
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<version>[1.0.0, 2.0.0)</version>
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<version>[1.0.0, 2.0.0-SNAPSHOT)</version>
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<scope>compile</scope>
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</dependency>
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<dependency>
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@ -119,6 +130,15 @@
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<artifactId>slf4j-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<!-- REQUIRED FOR JDK_11 -->
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<dependency>
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<groupId>org.projectlombok</groupId>
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<artifactId>lombok</artifactId>
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<version>1.18.4</version>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>junit</groupId>
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<artifactId>junit</artifactId>
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|
|
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@ -12,6 +12,7 @@ import org.gcube.portlets.widgets.ckan2zenodopublisher.client.view.FormValidator
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import org.gcube.portlets.widgets.ckan2zenodopublisher.client.view.LoaderIcon;
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import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.CatalogueItem;
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import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.ZenodoError;
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import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.DOI_dv;
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import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoItem;
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import com.github.gwtbootstrap.client.ui.Alert;
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@ -30,6 +31,8 @@ import com.google.gwt.json.client.JSONParser;
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import com.google.gwt.json.client.JSONValue;
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import com.google.gwt.user.client.Window;
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import com.google.gwt.user.client.rpc.AsyncCallback;
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import com.google.gwt.user.client.ui.FlowPanel;
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import com.google.gwt.user.client.ui.HTML;
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import com.google.gwt.user.client.ui.VerticalPanel;
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import com.google.gwt.user.client.ui.Widget;
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@ -97,6 +100,7 @@ public class CkanToZendoPublisherWidget {
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@Override
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public void onSuccess(ZenodoItem result) {
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GWT.log("Zenodo item returned is: "+result);
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loader.setVisible(false);
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modal.remove(loader);
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manager = new Ckan2ZenodoViewManager();
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|
@ -163,7 +167,7 @@ public class CkanToZendoPublisherWidget {
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//Submit publish on zenodo.
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ZenodoItem zenodoItem = manager.getZenodoItemFromFieldsForm();
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GWT.log("Publishing file: "+zenodoItem.getFiles());
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ckanToZenodoService.publishOnZenodo(zenodoItem, new AsyncCallback<String>() {
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ckanToZenodoService.publishOnZenodo(zenodoItem, new AsyncCallback<DOI_dv>() {
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@Override
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public void onFailure(Throwable caught) {
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|
@ -179,7 +183,7 @@ public class CkanToZendoPublisherWidget {
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}
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@Override
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public void onSuccess(String doi) {
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public void onSuccess(DOI_dv doi_dv) {
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buttonPublish.setEnabled(false);
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basicTabPanel.getElement().getStyle().setOpacity(1.0);
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try {
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|
@ -189,15 +193,27 @@ public class CkanToZendoPublisherWidget {
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}
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String msg = "The item has been uploaded to Zenodo correctly";
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if(doi!=null)
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msg+=" "+doi;
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Alert infoLabel = new Alert();
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infoLabel.setClose(false);
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infoLabel.setType(AlertType.INFO);
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infoLabel.setText(msg);
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showResults(Arrays.asList(infoLabel.asWidget()));
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Modal modal = new Modal(true, true);
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modal.setCloseVisible(true);
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modal.setTitle("Item uploaded to Zenodo!");
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modal.add(infoLabel);
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if(doi_dv!=null) {
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FlowPanel dF = new FlowPanel();
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dF.add(new HTML("DOI: "+doi_dv.getDoi()));
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FlowPanel dFU = new FlowPanel();
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dFU.add(new HTML("DOI URL: <a href='"+doi_dv.getDoi_url()+"' target='_blank'>"+doi_dv.getDoi_url()+"</a>"));
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modal.add(dF);
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modal.add(dFU);
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}
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modal.show();
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//showResults(Arrays.asList(infoLabel.asWidget()));
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}
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});
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|
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@ -3,6 +3,7 @@ package org.gcube.portlets.widgets.ckan2zenodopublisher.client;
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import java.util.Map;
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import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.CatalogueItem;
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import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.DOI_dv;
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import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoItem;
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import com.google.gwt.user.client.rpc.RemoteService;
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@ -34,7 +35,7 @@ public interface CkanToZenodoPublisherService extends RemoteService {
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* @return the DOI of published Zenodo Item
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* @throws Exception the exception
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*/
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String publishOnZenodo(ZenodoItem zenodoItem) throws Exception;
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DOI_dv publishOnZenodo(ZenodoItem zenodoItem) throws Exception;
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/**
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* Read fields descriptions.
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@ -44,4 +45,12 @@ public interface CkanToZenodoPublisherService extends RemoteService {
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*/
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Map<String, String> readFieldsDescriptions() throws Exception;
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/**
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* Check zenodo environment.
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*
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* @return the true is Zenodo environment is configured in the operating scope,
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* false otherwise
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||||
*/
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||||
Boolean checkZenodoEnvironment();
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||||
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||||
}
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||||
|
|
|
@ -3,6 +3,7 @@ package org.gcube.portlets.widgets.ckan2zenodopublisher.client;
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|||
import java.util.Map;
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||||
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||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.CatalogueItem;
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||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.DOI_dv;
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||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoItem;
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||||
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||||
import com.google.gwt.core.client.GWT;
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||||
|
@ -33,9 +34,11 @@ public interface CkanToZenodoPublisherServiceAsync {
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|||
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||||
void convertToZenodoItem(CatalogueItem item, AsyncCallback<ZenodoItem> callback);
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||||
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||||
void publishOnZenodo(ZenodoItem zenodoItem, AsyncCallback<String> callback);
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||||
void publishOnZenodo(ZenodoItem zenodoItem, AsyncCallback<DOI_dv> callback);
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||||
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||||
void readFieldsDescriptions(AsyncCallback<Map<String, String>> callback);
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||||
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||||
void checkZenodoEnvironment(AsyncCallback<Boolean> callback);
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||||
|
||||
|
||||
}
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||||
|
|
|
@ -259,6 +259,8 @@ public class BasicInformationView extends Composite implements FormValidator {
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InfoTextAndLabels.addTooltipForFieldKey("description", cl_description);
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field_doi.setValue(zenodoItem.getDoi());
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GWT.log("Filling form with: "+zenodoItem.getMetadata());
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|
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ZenodoMetadata zMeta = zenodoItem.getMetadata();
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||||
if (zMeta != null) {
|
||||
|
||||
|
@ -327,20 +329,19 @@ public class BasicInformationView extends Composite implements FormValidator {
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InfoTextAndLabels.addTooltipForFieldKey("access_conditions", cl_access_conditions);
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|
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// License
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||||
if (zMeta.getLicenses() != null) {
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List<String> listLicensesIds = null;
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List<String> selectedLicensesId = FieldUtil.toZenodoIds(zMeta.getLicenses().getSelectedValues());
|
||||
if(zMeta.getLicenses().getSelectableValues()!=null) {
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listLicensesIds = FieldUtil.toZenodoIds(zMeta.getLicenses().getSelectableValues());
|
||||
FieldUtil.addValuesToListBox(field_license, listLicensesIds);
|
||||
if (zMeta.getLicenseIDs() != null) {
|
||||
//List<String> listLicensesIds = null;
|
||||
List<String> selectedLicensesId = FieldUtil.toZenodoIds(zMeta.getLicenseIDs());
|
||||
if(selectedLicensesId!=null) {
|
||||
FieldUtil.addValuesToListBox(field_license, selectedLicensesId);
|
||||
field_license.setEnabled(true);
|
||||
}else {
|
||||
//Exception case on missing list of selectable license ids
|
||||
FieldUtil.addValuesToListBox(field_license, selectedLicensesId);
|
||||
//FieldUtil.addValuesToListBox(field_license, selectedLicensesId);
|
||||
field_license.setEnabled(false); //only one license id is available
|
||||
|
||||
}
|
||||
FieldUtil.selectValueToListBox(field_license, selectedLicensesId);
|
||||
//FieldUtil.selectValueToListBox(field_license, selectedLicensesId);
|
||||
}else
|
||||
field_license.setEnabled(false);
|
||||
|
||||
|
|
|
@ -8,7 +8,6 @@ import java.util.List;
|
|||
import org.gcube.portlets.widgets.ckan2zenodopublisher.client.ui.BasicTabPanel;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.client.ui.basicinformation.BasicInformationView;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.SerializableEnum;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.LicenseBean;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoContributor;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoCreator;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoFile;
|
||||
|
@ -124,6 +123,9 @@ public class Ckan2ZenodoViewManager {
|
|||
meta.setDescription(basicForm.getField_description().getValue());
|
||||
meta.setKeywords(basicForm.getTags()); // these are the keywords
|
||||
|
||||
//Setting publication date fxing #26166
|
||||
meta.setPublication_date(basicForm.getField_publication_date().getValue());
|
||||
|
||||
List<ZenodoCreator> creators = basicForm.getListOfCreators();
|
||||
GWT.log("Read creators from FORM: "+creators);
|
||||
meta.setCreators(creators);
|
||||
|
@ -162,8 +164,11 @@ public class Ckan2ZenodoViewManager {
|
|||
//license
|
||||
String licenseId = basicForm.getField_license().getSelectedValue();
|
||||
if(licenseId!=null) {
|
||||
LicenseBean licenseBean = new LicenseBean(licenseId, null, null);
|
||||
meta.setLicenses(new SerializableEnum<LicenseBean>(Arrays.asList(licenseBean),null));
|
||||
//LicenseDTO licenseBean = new LicenseDTO(licenseId, null, null);
|
||||
List<String> licenses = new ArrayList<String>();
|
||||
licenses.add(licenseId);
|
||||
meta.setLicenseIDs(licenses);
|
||||
//meta.setLicenses(Arrays.asList(licenseBean));
|
||||
}
|
||||
|
||||
//embargo date
|
||||
|
|
|
@ -3,9 +3,6 @@ package org.gcube.portlets.widgets.ckan2zenodopublisher.client.view;
|
|||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.ZenodoLicense;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.LicenseBean;
|
||||
|
||||
import com.github.gwtbootstrap.client.ui.ControlGroup;
|
||||
import com.github.gwtbootstrap.client.ui.ListBox;
|
||||
import com.github.gwtbootstrap.client.ui.TextBox;
|
||||
|
@ -98,17 +95,18 @@ public class FieldUtil {
|
|||
|
||||
/**
|
||||
* To zenodo ids.
|
||||
* TODO Must passed an object License
|
||||
*
|
||||
* @param listLicenses the list licenses
|
||||
* @return the list
|
||||
*/
|
||||
public static List<String> toZenodoIds(List<LicenseBean> listLicenses){
|
||||
public static List<String> toZenodoIds(List<String> listLicenses){
|
||||
if(listLicenses==null)
|
||||
return null;
|
||||
|
||||
List<String> licenses = new ArrayList<String>(listLicenses.size());
|
||||
for (ZenodoLicense zenodoLicense : listLicenses) {
|
||||
licenses.add(zenodoLicense.getId());
|
||||
for (String zenodoLicense : listLicenses) {
|
||||
licenses.add(zenodoLicense);
|
||||
}
|
||||
|
||||
return licenses;
|
||||
|
|
|
@ -1,5 +1,6 @@
|
|||
package org.gcube.portlets.widgets.ckan2zenodopublisher.server;
|
||||
|
||||
import java.util.Date;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
@ -15,6 +16,7 @@ import org.gcube.data.publishing.ckan2zenodo.model.faults.ConfigurationException
|
|||
import org.gcube.data.publishing.ckan2zenodo.model.faults.GcatException;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.faults.TransformationException;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.faults.ZenodoException;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.report.EnvironmentReport;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.zenodo.DepositionMetadata;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.zenodo.ZenodoDeposition;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.client.CkanToZenodoPublisherService;
|
||||
|
@ -24,6 +26,7 @@ import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.CatalogueItem;
|
|||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.ItemTranslateError;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.ItemTranslateError.ERROR_TYPE;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.ZenodoError;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.DOI_dv;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoFile;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoItem;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoMetadata;
|
||||
|
@ -45,13 +48,16 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
|
||||
private static Logger LOG = LoggerFactory.getLogger(CkanToZenodoPublisherServiceImpl.class);
|
||||
|
||||
|
||||
/* (non-Javadoc)
|
||||
* @see org.gcube.portlets.widgets.ckan2zenodopublisher.client.CkanToZenodoPublisherService#publishOnZenodo(org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoItem)
|
||||
/*
|
||||
* (non-Javadoc)
|
||||
*
|
||||
* @see org.gcube.portlets.widgets.ckan2zenodopublisher.client.
|
||||
* CkanToZenodoPublisherService#publishOnZenodo(org.gcube.portlets.widgets.
|
||||
* ckan2zenodopublisher.shared.wrapped.ZenodoItem)
|
||||
*/
|
||||
@Override
|
||||
public String publishOnZenodo(ZenodoItem zenodoItem) throws Exception {
|
||||
|
||||
public DOI_dv publishOnZenodo(ZenodoItem zenodoItem) throws Exception {
|
||||
LOG.info("publishOnZenodo called");
|
||||
try {
|
||||
|
||||
if (isOutFromPortal()) {
|
||||
|
@ -59,6 +65,7 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
PortalUtils.getCurrentToken(this.getThreadLocalRequest(), true);
|
||||
}
|
||||
|
||||
LOG.debug("publishOnZenodo called with metadata: "+zenodoItem.getMetadata());
|
||||
|
||||
Ckan2Zenodo client = new Ckan2ZenodoImpl();
|
||||
// Get the item representation
|
||||
|
@ -79,7 +86,8 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
// Updating Deposition Metadata potentially changed on client-side
|
||||
ZenodoMetadata metadata = zenodoItem.getMetadata();
|
||||
DepositionMetadata depositionMetadata = zenodoDepositionPreview.getMetadata();
|
||||
depositionMetadata = ItemToZenodoConverter.updateMetadataInfoOfDepositionMetadata(metadata, depositionMetadata);
|
||||
depositionMetadata = ItemToZenodoConverter.updateMetadataInfoOfDepositionMetadata(metadata,
|
||||
depositionMetadata);
|
||||
zenodoDepositionPreview.setMetadata(depositionMetadata);
|
||||
|
||||
// Loading Filtered resources according to VRE policies
|
||||
|
@ -93,7 +101,8 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
for (CkanResource ckanResource : filteredResources) {
|
||||
if (zf.getId().compareTo(ckanResource.getId()) == 0 && zf.getIsAlreadyPublished() == false) {
|
||||
if (CkanToZenodoUtil.isNotEmpty(zf.getFilename())) {
|
||||
ckanResource.setName(zf.getFilename()); //only the filename can be changed on clien-side
|
||||
ckanResource.setName(zf.getFilename()); // only the filename can be changed on
|
||||
// clien-side
|
||||
toUpload.add(ckanResource);
|
||||
}
|
||||
}
|
||||
|
@ -105,12 +114,22 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
// Step 1 : metadata
|
||||
client = new Ckan2ZenodoImpl();
|
||||
LOG.debug("Calling updatedMetadata for: " + zenodoDepositionPreview);
|
||||
|
||||
//fixing issue #26166
|
||||
Date thePublicationDate = zenodoDepositionPreview.getMetadata().getPublication_date();
|
||||
LOG.debug("Publication_Date before update is: " + thePublicationDate);
|
||||
|
||||
zenodoDepositionPreview = client.updatedMetadata(zenodoDepositionPreview);
|
||||
|
||||
// Step 2 : publish Resources
|
||||
if (toUpload.size() > 0) {
|
||||
LOG.debug("Trying to publish the set of CKAN resources: " + toUpload.toString());
|
||||
|
||||
//fixing issue #26166
|
||||
zenodoDepositionPreview.getMetadata().setPublication_date(thePublicationDate);
|
||||
LOG.debug("Publication_Date before uploadFiles is: " + zenodoDepositionPreview.getMetadata().getPublication_date());
|
||||
Future<ZenodoDeposition> future_Dep = client.uploadFiles(toUpload, zenodoDepositionPreview);
|
||||
|
||||
while (!future_Dep.isDone()) {
|
||||
LOG.debug("Waiting for completed future computation (publishing of resources on Zenodo)...");
|
||||
Thread.sleep(2000);
|
||||
|
@ -120,10 +139,15 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
|
||||
// Get the item representation
|
||||
CkanItemDescriptor item = client.read(zenodoItem.getName());
|
||||
|
||||
//fixing issue #26166
|
||||
LOG.debug("Publication_Date before publish is: " + thePublicationDate);
|
||||
zenodoDepositionPreview.getMetadata().setPublication_date(thePublicationDate);
|
||||
|
||||
// Finalize
|
||||
LOG.debug("Calling publish on Zenodo for: " + zenodoDepositionPreview);
|
||||
zenodoDepositionPreview = client.publish(zenodoDepositionPreview, item);
|
||||
return zenodoDepositionPreview.getDoi();
|
||||
return new DOI_dv(zenodoDepositionPreview.getDoi(), zenodoDepositionPreview.getDoi_url());
|
||||
|
||||
// throw new ZenodoException();
|
||||
|
||||
|
@ -133,7 +157,8 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
String clientError = String.format("%s", error);
|
||||
throw new Exception(clientError);
|
||||
} catch (ZenodoException e) {
|
||||
String error = ZenodoException.class.getName()+" during upload to Zenodo the catalogue item: "+zenodoItem.getName();
|
||||
String error = ZenodoException.class.getName() + " during upload to Zenodo the catalogue item: "
|
||||
+ zenodoItem.getName();
|
||||
LOG.error(error, e);
|
||||
// String clientError = String.format("%s", e.getRemoteMessage());
|
||||
ZenodoError zenodoError = new ZenodoError(e);
|
||||
|
@ -149,12 +174,16 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
|
||||
}
|
||||
|
||||
/* (non-Javadoc)
|
||||
* @see org.gcube.portlets.widgets.ckan2zenodopublisher.client.CkanToZenodoPublisherService#convertToZenodoItem(org.gcube.portlets.widgets.ckan2zenodopublisher.shared.CatalogueItem)
|
||||
/*
|
||||
* (non-Javadoc)
|
||||
*
|
||||
* @see org.gcube.portlets.widgets.ckan2zenodopublisher.client.
|
||||
* CkanToZenodoPublisherService#convertToZenodoItem(org.gcube.portlets.widgets.
|
||||
* ckan2zenodopublisher.shared.CatalogueItem)
|
||||
*/
|
||||
@Override
|
||||
public ZenodoItem convertToZenodoItem(CatalogueItem item) throws Exception {
|
||||
|
||||
LOG.info("convertToZenodoItem called");
|
||||
try {
|
||||
|
||||
if (isOutFromPortal()) {
|
||||
|
@ -170,16 +199,14 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
ItemTranslateError itemTrError = null;
|
||||
try {
|
||||
zdDeposition = client.translate(itemDescr);
|
||||
} catch (ConfigurationException e) {
|
||||
} catch (ConfigurationException | TransformationException e) {
|
||||
LOG.info(ConfigurationException.class.getSimpleName() + " thrown, trying to use forceTranslation for: "
|
||||
+ itemDescr.getName());
|
||||
itemTrError = new ItemTranslateError(e.getMessage(), ERROR_TYPE.INFO);
|
||||
zdDeposition = client.forceTranslation(itemDescr);
|
||||
}
|
||||
|
||||
//Loading Filtered resources according to VRE policies
|
||||
List<CkanResource> filteredResources = loadFilterResources(item.getItemId());
|
||||
|
||||
LOG.debug("Loaded filtered resources: " + filteredResources);
|
||||
|
||||
// Converting ZenodoDeposition to ZenodoItem
|
||||
|
@ -192,16 +219,22 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
List<ZenodoFile> resources = ItemToZenodoConverter.toZenodoFiles(filteredResources, false);
|
||||
zenodoItem.addFiles(resources);
|
||||
|
||||
//I'M SETTING THE ID BECAUSE THE NAME IS NULL INTO BEAN PASSED FROM PORTLET SIDE
|
||||
// I'M SETTING THE ID BECAUSE THE NAME IS NULL INTO BEAN PASSED FROM PORTLET
|
||||
// SIDE
|
||||
// TODO I'M WAITING FOR itemName retrieved from ckan2zenodo library
|
||||
zenodoItem.setName(item.getItemId());
|
||||
|
||||
LOG.debug("zenodoItem getLicenses as list: " + zenodoItem.getMetadata().getLicenseIDs());
|
||||
//LOG.debug("setting licenses at null");
|
||||
//zenodoItem.getMetadata().setLicenseIDs(null);
|
||||
|
||||
LOG.debug("Returning item: " + zenodoItem);
|
||||
|
||||
return zenodoItem;
|
||||
|
||||
} catch (ZenodoException e) {
|
||||
String error = ZenodoException.class.getName()+" on converting the catalogue item with id: "+item.getItemId();
|
||||
String error = ZenodoException.class.getName() + " on converting the catalogue item with id: "
|
||||
+ item.getItemId();
|
||||
LOG.error(error, e);
|
||||
// String clientError = String.format("%s. %s", error, e.getRemoteMessage());
|
||||
ZenodoError zenodoError = new ZenodoError(e);
|
||||
|
@ -218,12 +251,16 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
|
||||
}
|
||||
|
||||
/* (non-Javadoc)
|
||||
* @see org.gcube.portlets.widgets.ckan2zenodopublisher.client.CkanToZenodoPublisherService#convertToZenodoItem(org.gcube.portlets.widgets.ckan2zenodopublisher.shared.CatalogueItem)
|
||||
/*
|
||||
* (non-Javadoc)
|
||||
*
|
||||
* @see org.gcube.portlets.widgets.ckan2zenodopublisher.client.
|
||||
* CkanToZenodoPublisherService#convertToZenodoItem(org.gcube.portlets.widgets.
|
||||
* ckan2zenodopublisher.shared.CatalogueItem)
|
||||
*/
|
||||
@Override
|
||||
public Map<String, String> readFieldsDescriptions() throws Exception {
|
||||
|
||||
LOG.info("readFieldsDescriptions called");
|
||||
try {
|
||||
|
||||
if (isOutFromPortal()) {
|
||||
|
@ -242,6 +279,31 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
|
||||
}
|
||||
|
||||
@Override
|
||||
public Boolean checkZenodoEnvironment() {
|
||||
LOG.info("checkZenodoEnvironment called");
|
||||
boolean isZenodoConfigured = false;
|
||||
|
||||
try {
|
||||
|
||||
if (isOutFromPortal()) {
|
||||
PortalUtils.getCurrentContext(this.getThreadLocalRequest(), true);
|
||||
PortalUtils.getCurrentToken(this.getThreadLocalRequest(), true);
|
||||
}
|
||||
|
||||
LOG.info("readFieldsDescriptions called");
|
||||
Ckan2Zenodo client = new Ckan2ZenodoImpl();
|
||||
EnvironmentReport report = client.checkEnvironment();
|
||||
LOG.info("EnvironmentReport returned: " + report);
|
||||
isZenodoConfigured = report.isok();
|
||||
} catch (Exception e) {
|
||||
LOG.error("Error occurred during checkEnvironment: ", e);
|
||||
}
|
||||
|
||||
LOG.info("Is Zenodo Environment configured? " + isZenodoConfigured);
|
||||
return isZenodoConfigured;
|
||||
}
|
||||
|
||||
/**
|
||||
* Load filter resources.
|
||||
*
|
||||
|
@ -251,7 +313,8 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
* @throws ConfigurationException the configuration exception
|
||||
* @throws TransformationException the transformation exception
|
||||
*/
|
||||
private List<CkanResource> loadFilterResources(String itemName) throws GcatException, ConfigurationException, TransformationException {
|
||||
private List<CkanResource> loadFilterResources(String itemName)
|
||||
throws GcatException, ConfigurationException, TransformationException {
|
||||
|
||||
Ckan2Zenodo client = new Ckan2ZenodoImpl();
|
||||
// Get the item representation
|
||||
|
@ -269,10 +332,10 @@ public class CkanToZenodoPublisherServiceImpl extends RemoteServiceServlet imple
|
|||
try {
|
||||
UserLocalServiceUtil.getService();
|
||||
return false;
|
||||
}
|
||||
catch (com.liferay.portal.kernel.bean.BeanLocatorException ex) {
|
||||
} catch (com.liferay.portal.kernel.bean.BeanLocatorException ex) {
|
||||
LOG.debug("Development Mode ON");
|
||||
return true;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -4,7 +4,6 @@ import java.util.ArrayList;
|
|||
import java.util.List;
|
||||
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.SerializableEnum;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.ZenodoLicense;
|
||||
|
||||
|
||||
/**
|
||||
|
@ -48,20 +47,6 @@ public class CkanToZenodoUtil {
|
|||
return new SerializableEnum<String>(selectedValues, values);
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* To serializable enum.
|
||||
*
|
||||
* @param <E> the element type
|
||||
* @param selectedLicense the selected license
|
||||
* @param allLicenses the all licenses
|
||||
* @return the serializable enum
|
||||
*/
|
||||
public static <E extends ZenodoLicense> SerializableEnum<E> toSerializableEnum(List<E> selectedLicense, List<E> allLicenses) {
|
||||
|
||||
return new SerializableEnum<E>(selectedLicense, allLicenses);
|
||||
}
|
||||
|
||||
/**
|
||||
* Checks if is not empty.
|
||||
*
|
||||
|
|
|
@ -1,7 +1,6 @@
|
|||
package org.gcube.portlets.widgets.ckan2zenodopublisher.server.converter;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
import java.util.Date;
|
||||
import java.util.List;
|
||||
|
||||
|
@ -23,7 +22,6 @@ import org.gcube.data.publishing.ckan2zenodo.model.zenodo.Subject;
|
|||
import org.gcube.data.publishing.ckan2zenodo.model.zenodo.ZenodoDeposition;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.server.CkanToZenodoUtil;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.SerializableEnum;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.LicenseBean;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoAuthor;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoCommunity;
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoContributor;
|
||||
|
@ -37,8 +35,6 @@ import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped.ZenodoSubj
|
|||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
|
||||
|
||||
/**
|
||||
* The Class ItemToZenodoConverter.
|
||||
*
|
||||
|
@ -49,6 +45,7 @@ import org.slf4j.LoggerFactory;
|
|||
public class ItemToZenodoConverter {
|
||||
|
||||
private static Logger LOG = LoggerFactory.getLogger(ItemToZenodoConverter.class);
|
||||
|
||||
/**
|
||||
* **
|
||||
*
|
||||
|
@ -59,7 +56,6 @@ public class ItemToZenodoConverter {
|
|||
* @return the zenodo item
|
||||
*/
|
||||
|
||||
|
||||
/**
|
||||
* To zenodo item.
|
||||
*
|
||||
|
@ -97,7 +93,6 @@ public class ItemToZenodoConverter {
|
|||
return zi;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Adds the files.
|
||||
*
|
||||
|
@ -137,8 +132,6 @@ public class ItemToZenodoConverter {
|
|||
return listOfFiles;
|
||||
}
|
||||
|
||||
|
||||
|
||||
/**
|
||||
* To zenodo file.
|
||||
*
|
||||
|
@ -160,7 +153,6 @@ public class ItemToZenodoConverter {
|
|||
return zf;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* To zenodo file.
|
||||
*
|
||||
|
@ -185,7 +177,6 @@ public class ItemToZenodoConverter {
|
|||
return zf;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* To zenodo metadata.
|
||||
*
|
||||
|
@ -201,6 +192,9 @@ public class ItemToZenodoConverter {
|
|||
zm.setAccess_conditions(depositionMetadata.getAccess_conditions());
|
||||
zm.setDescription(depositionMetadata.getDescription());
|
||||
|
||||
// fixing bug #26165 on publication_date = null
|
||||
zm.setPublication_date(depositionMetadata.getPublication_date());
|
||||
|
||||
// Access Type
|
||||
AccessRights[] accessRight = null;
|
||||
if (depositionMetadata.getAccess_right() != null) {
|
||||
|
@ -235,11 +229,14 @@ public class ItemToZenodoConverter {
|
|||
zm.setImage_type(CkanToZenodoUtil.toSerializableEnum(imageType, ImageType.values()));
|
||||
|
||||
// Licenses
|
||||
List<LicenseBean> selectedLicenses = null;
|
||||
List<String> selectedLicenses = null;
|
||||
if (depositionMetadata.getLicense() != null) {
|
||||
selectedLicenses = Arrays.asList(new LicenseBean(depositionMetadata.getLicense(),depositionMetadata.getLicense(), null));
|
||||
selectedLicenses = new ArrayList<String>();
|
||||
selectedLicenses.add(depositionMetadata.getLicense()); // NEED TO ADD ALL LICENSES
|
||||
}
|
||||
if (selectedLicenses != null) {
|
||||
zm.setLicenseIDs(selectedLicenses);
|
||||
}
|
||||
zm.setLicenses(CkanToZenodoUtil.toSerializableEnum(selectedLicenses, null)); //NEED TO ADD ALL LICENSES
|
||||
|
||||
if (depositionMetadata.getEmbargo_date() != null) {
|
||||
|
||||
|
@ -274,7 +271,6 @@ public class ItemToZenodoConverter {
|
|||
return zm;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* To zenodo subjects.
|
||||
*
|
||||
|
@ -316,7 +312,6 @@ public class ItemToZenodoConverter {
|
|||
return list;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* To zenodo date intervals.
|
||||
*
|
||||
|
@ -336,7 +331,8 @@ public class ItemToZenodoConverter {
|
|||
types = CkanToZenodoUtil.toSerializableEnum(rel, DateInterval.Type.values());
|
||||
}
|
||||
|
||||
list.add(new ZenodoDateInterval(dateInterval.getStart(), dateInterval.getEnd(), types, dateInterval.getDescription()));
|
||||
list.add(new ZenodoDateInterval(dateInterval.getStart(), dateInterval.getEnd(), types,
|
||||
dateInterval.getDescription()));
|
||||
}
|
||||
|
||||
return list;
|
||||
|
@ -415,7 +411,6 @@ public class ItemToZenodoConverter {
|
|||
return list;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* To service file deposition.
|
||||
*
|
||||
|
@ -439,7 +434,6 @@ public class ItemToZenodoConverter {
|
|||
return fileDep;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Update metadata info of deposition metadata.
|
||||
*
|
||||
|
@ -447,7 +441,8 @@ public class ItemToZenodoConverter {
|
|||
* @param depositionMetadata the deposition metadata
|
||||
* @return the deposition metadata
|
||||
*/
|
||||
public static DepositionMetadata updateMetadataInfoOfDepositionMetadata(ZenodoMetadata metadata, DepositionMetadata depositionMetadata) {
|
||||
public static DepositionMetadata updateMetadataInfoOfDepositionMetadata(ZenodoMetadata metadata,
|
||||
DepositionMetadata depositionMetadata) {
|
||||
|
||||
// description
|
||||
String description = metadata.getDescription();
|
||||
|
@ -525,13 +520,13 @@ public class ItemToZenodoConverter {
|
|||
}
|
||||
|
||||
// license
|
||||
SerializableEnum<LicenseBean> licenses = metadata.getLicenses();
|
||||
List<String> licenses = metadata.getLicenseIDs();
|
||||
LOG.debug("Read licenses: " + licenses);
|
||||
if(licenses!=null) {
|
||||
if (licenses != null && licenses.size() > 0) {
|
||||
try {
|
||||
LicenseBean lB = licenses.getSelectedValues().get(0);
|
||||
String lB = licenses.get(0);
|
||||
LOG.debug("Set license: " + lB);
|
||||
depositionMetadata.setLicense(lB.getId());
|
||||
depositionMetadata.setLicense(lB);
|
||||
} catch (Exception e) {
|
||||
LOG.warn("Set license error: ", e);
|
||||
}
|
||||
|
@ -568,7 +563,6 @@ public class ItemToZenodoConverter {
|
|||
return depositionMetadata;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* To creators.
|
||||
*
|
||||
|
@ -638,6 +632,4 @@ public class ItemToZenodoConverter {
|
|||
return listOfContributors;
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
|
|
@ -32,7 +32,7 @@ public class ItemTranslateError implements Serializable {
|
|||
/**
|
||||
* Instantiates a new zenodo translate error.
|
||||
*/
|
||||
ItemTranslateError() {
|
||||
public ItemTranslateError() {
|
||||
}
|
||||
|
||||
/**
|
||||
|
|
|
@ -1,34 +0,0 @@
|
|||
package org.gcube.portlets.widgets.ckan2zenodopublisher.shared;
|
||||
|
||||
|
||||
/**
|
||||
* The Interface ZenodoLicense.
|
||||
*
|
||||
* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
|
||||
*
|
||||
* Jan 21, 2020
|
||||
*/
|
||||
public interface ZenodoLicense {
|
||||
|
||||
/**
|
||||
* Gets the id.
|
||||
*
|
||||
* @return the id
|
||||
*/
|
||||
String getId();
|
||||
|
||||
/**
|
||||
* Gets the title.
|
||||
*
|
||||
* @return the title
|
||||
*/
|
||||
String getTitle();
|
||||
|
||||
/**
|
||||
* Gets the url.
|
||||
*
|
||||
* @return the url
|
||||
*/
|
||||
String getUrl();
|
||||
|
||||
}
|
|
@ -0,0 +1,92 @@
|
|||
package org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
|
||||
/**
|
||||
* The Class DOI_dv.
|
||||
*
|
||||
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
|
||||
*
|
||||
* Jul 28, 2023
|
||||
*/
|
||||
public class DOI_dv implements Serializable {
|
||||
|
||||
/**
|
||||
*
|
||||
*/
|
||||
private static final long serialVersionUID = 1L;
|
||||
private String doi;
|
||||
private String doi_url;
|
||||
|
||||
/**
|
||||
* Instantiates a new DO I dv.
|
||||
*/
|
||||
public DOI_dv() {
|
||||
}
|
||||
|
||||
/**
|
||||
* Instantiates a new DO I dv.
|
||||
*
|
||||
* @param doi the doi
|
||||
* @param doi_url the doi url
|
||||
*/
|
||||
public DOI_dv(String doi, String doi_url) {
|
||||
super();
|
||||
this.doi = doi;
|
||||
this.doi_url = doi_url;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets the doi.
|
||||
*
|
||||
* @return the doi
|
||||
*/
|
||||
public String getDoi() {
|
||||
return doi;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets the doi url.
|
||||
*
|
||||
* @return the doi url
|
||||
*/
|
||||
public String getDoi_url() {
|
||||
return doi_url;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets the doi.
|
||||
*
|
||||
* @param doi the new doi
|
||||
*/
|
||||
public void setDoi(String doi) {
|
||||
this.doi = doi;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets the doi url.
|
||||
*
|
||||
* @param doi_url the new doi url
|
||||
*/
|
||||
public void setDoi_url(String doi_url) {
|
||||
this.doi_url = doi_url;
|
||||
}
|
||||
|
||||
/**
|
||||
* To string.
|
||||
*
|
||||
* @return the string
|
||||
*/
|
||||
@Override
|
||||
public String toString() {
|
||||
StringBuilder builder = new StringBuilder();
|
||||
builder.append("DOI_dv [doi=");
|
||||
builder.append(doi);
|
||||
builder.append(", doi_url=");
|
||||
builder.append(doi_url);
|
||||
builder.append("]");
|
||||
return builder.toString();
|
||||
}
|
||||
|
||||
}
|
|
@ -1,98 +0,0 @@
|
|||
package org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.ZenodoLicense;
|
||||
|
||||
/**
|
||||
* A license bean like the ckan's one.
|
||||
*
|
||||
* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
|
||||
*
|
||||
* Jan 13, 2020
|
||||
*/
|
||||
public class LicenseBean implements Serializable, ZenodoLicense{
|
||||
|
||||
/**
|
||||
*
|
||||
*/
|
||||
private static final long serialVersionUID = 6618784269251750489L;
|
||||
private String id;
|
||||
private String title;
|
||||
private String url;
|
||||
|
||||
/**
|
||||
* Instantiates a new license bean.
|
||||
*/
|
||||
public LicenseBean() {
|
||||
super();
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Instantiates a new license bean.
|
||||
*
|
||||
* @param id the id
|
||||
* @param title the title
|
||||
* @param url the url
|
||||
*/
|
||||
public LicenseBean(String id, String title, String url) {
|
||||
super();
|
||||
this.id = id;
|
||||
this.title = title;
|
||||
this.url = url;
|
||||
}
|
||||
|
||||
|
||||
|
||||
public String getTitle() {
|
||||
return title;
|
||||
}
|
||||
|
||||
|
||||
public void setTitle(String title) {
|
||||
this.title = title;
|
||||
}
|
||||
|
||||
|
||||
public String getUrl() {
|
||||
return url;
|
||||
}
|
||||
|
||||
|
||||
public void setUrl(String url) {
|
||||
this.url = url;
|
||||
}
|
||||
|
||||
public String getId() {
|
||||
return id;
|
||||
}
|
||||
|
||||
public void setId(String id) {
|
||||
this.id = id;
|
||||
}
|
||||
|
||||
|
||||
/* (non-Javadoc)
|
||||
* @see java.lang.Object#equals(java.lang.Object)
|
||||
*/
|
||||
@Override
|
||||
public boolean equals(Object obj) {
|
||||
return obj.getClass().equals(this.getClass()) && ((LicenseBean)obj).getTitle().equals(this.title);
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
StringBuilder builder = new StringBuilder();
|
||||
builder.append("LicenseBean [id=");
|
||||
builder.append(id);
|
||||
builder.append(", title=");
|
||||
builder.append(title);
|
||||
builder.append(", url=");
|
||||
builder.append(url);
|
||||
builder.append("]");
|
||||
return builder.toString();
|
||||
}
|
||||
|
||||
}
|
|
@ -0,0 +1,71 @@
|
|||
//package org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped;
|
||||
//
|
||||
//import java.io.Serializable;
|
||||
//
|
||||
///**
|
||||
// * A license bean like the ckan's one.
|
||||
// *
|
||||
// * @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
|
||||
// *
|
||||
// * Jan 13, 2020
|
||||
// */
|
||||
//public class LicenseDTO implements Serializable {
|
||||
//
|
||||
// /**
|
||||
// *
|
||||
// */
|
||||
// private static final long serialVersionUID = 8796338619448833841L;
|
||||
// private String id;
|
||||
// private String title;
|
||||
// private String url;
|
||||
//
|
||||
// /**
|
||||
// * Instantiates a new license bean.
|
||||
// */
|
||||
// public LicenseDTO() {
|
||||
// }
|
||||
//
|
||||
// public LicenseDTO(String id, String title, String url) {
|
||||
// this.id = id;
|
||||
// this.title = title;
|
||||
// this.url = url;
|
||||
// }
|
||||
//
|
||||
// public String getId() {
|
||||
// return id;
|
||||
// }
|
||||
//
|
||||
// public String getTitle() {
|
||||
// return title;
|
||||
// }
|
||||
//
|
||||
// public String getUrl() {
|
||||
// return url;
|
||||
// }
|
||||
//
|
||||
// public void setId(String id) {
|
||||
// this.id = id;
|
||||
// }
|
||||
//
|
||||
// public void setTitle(String title) {
|
||||
// this.title = title;
|
||||
// }
|
||||
//
|
||||
// public void setUrl(String url) {
|
||||
// this.url = url;
|
||||
// }
|
||||
//
|
||||
// @Override
|
||||
// public String toString() {
|
||||
// StringBuilder builder = new StringBuilder();
|
||||
// builder.append("LicenseDTO [id=");
|
||||
// builder.append(id);
|
||||
// builder.append(", title=");
|
||||
// builder.append(title);
|
||||
// builder.append(", url=");
|
||||
// builder.append(url);
|
||||
// builder.append("]");
|
||||
// return builder.toString();
|
||||
// }
|
||||
//
|
||||
//}
|
|
@ -1,5 +1,7 @@
|
|||
package org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.SerializableEnum;
|
||||
|
||||
|
||||
|
@ -10,7 +12,7 @@ import org.gcube.portlets.widgets.ckan2zenodopublisher.shared.SerializableEnum;
|
|||
*
|
||||
* Jan 15, 2020
|
||||
*/
|
||||
public class ZenodoContributor extends ZenodoCreator{
|
||||
public class ZenodoContributor extends ZenodoCreator implements Serializable {
|
||||
|
||||
/**
|
||||
*
|
||||
|
|
|
@ -28,7 +28,7 @@ public class ZenodoDateInterval implements Serializable {
|
|||
/**
|
||||
* Instantiates a new zenodo date interval.
|
||||
*/
|
||||
ZenodoDateInterval() {
|
||||
public ZenodoDateInterval() {
|
||||
}
|
||||
|
||||
/**
|
||||
|
|
|
@ -0,0 +1,34 @@
|
|||
//package org.gcube.portlets.widgets.ckan2zenodopublisher.shared.wrapped;
|
||||
//
|
||||
//
|
||||
///**
|
||||
// * The Interface ZenodoLicense.
|
||||
// *
|
||||
// * @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
|
||||
// *
|
||||
// * Jan 21, 2020
|
||||
// */
|
||||
//public interface ZenodoLicense {
|
||||
//
|
||||
// /**
|
||||
// * Gets the id.
|
||||
// *
|
||||
// * @return the id
|
||||
// */
|
||||
// String getId();
|
||||
//
|
||||
// /**
|
||||
// * Gets the title.
|
||||
// *
|
||||
// * @return the title
|
||||
// */
|
||||
// String getTitle();
|
||||
//
|
||||
// /**
|
||||
// * Gets the url.
|
||||
// *
|
||||
// * @return the url
|
||||
// */
|
||||
// String getUrl();
|
||||
//
|
||||
//}
|
|
@ -77,7 +77,9 @@ public class ZenodoMetadata implements Serializable {
|
|||
private List<ZenodoDateInterval> dates;
|
||||
private String method; // TODO html
|
||||
|
||||
private SerializableEnum<LicenseBean> licenses;
|
||||
// private SerializableEnum<String> licenseIDs;
|
||||
|
||||
private List<String> licenseIDs;
|
||||
|
||||
/**
|
||||
* Instantiates a new zenodo metadata.
|
||||
|
@ -103,10 +105,20 @@ public class ZenodoMetadata implements Serializable {
|
|||
this.upload_type = upload_type;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets the contributors types.
|
||||
*
|
||||
* @return the contributors types
|
||||
*/
|
||||
public SerializableEnum<String> getContributorsTypes() {
|
||||
return contributorsTypes;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets the contributors types.
|
||||
*
|
||||
* @param contributorsTypes the new contributors types
|
||||
*/
|
||||
public void setContributorsTypes(SerializableEnum<String> contributorsTypes) {
|
||||
this.contributorsTypes = contributorsTypes;
|
||||
}
|
||||
|
@ -868,23 +880,28 @@ public class ZenodoMetadata implements Serializable {
|
|||
}
|
||||
|
||||
/**
|
||||
* Sets the licenses.
|
||||
* Sets the license IDs.
|
||||
*
|
||||
* @param licenses the new licenses
|
||||
* @param licensesIDs the new license IDs
|
||||
*/
|
||||
public void setLicenses(SerializableEnum<LicenseBean> licenses) {
|
||||
this.licenses = licenses;
|
||||
public void setLicenseIDs(List<String> licensesIDs) {
|
||||
this.licenseIDs = licensesIDs;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets the licenses.
|
||||
* Gets the license IDs.
|
||||
*
|
||||
* @return the licenses
|
||||
* @return the license IDs
|
||||
*/
|
||||
public SerializableEnum<LicenseBean> getLicenses() {
|
||||
return licenses;
|
||||
public List<String> getLicenseIDs() {
|
||||
return licenseIDs;
|
||||
}
|
||||
|
||||
/**
|
||||
* To string.
|
||||
*
|
||||
* @return the string
|
||||
*/
|
||||
@Override
|
||||
public String toString() {
|
||||
StringBuilder builder = new StringBuilder();
|
||||
|
@ -974,8 +991,8 @@ public class ZenodoMetadata implements Serializable {
|
|||
builder.append(dates);
|
||||
builder.append(", method=");
|
||||
builder.append(method);
|
||||
builder.append(", licenses=");
|
||||
builder.append(licenses);
|
||||
builder.append(", licenseIDs=");
|
||||
builder.append(licenseIDs);
|
||||
builder.append("]");
|
||||
return builder.toString();
|
||||
}
|
||||
|
|
|
@ -1,19 +1,101 @@
|
|||
package org.gcube.portlets.widgets.ckan2zenodopublisher.client;
|
||||
|
||||
import java.util.regex.Matcher;
|
||||
import java.util.regex.Pattern;
|
||||
import java.time.Instant;
|
||||
import java.util.Date;
|
||||
|
||||
import javax.ws.rs.client.Entity;
|
||||
|
||||
import org.gcube.data.publishing.ckan2zenodo.Fixer;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.faults.ZenodoException;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.zenodo.DepositionMetadata;
|
||||
import org.gcube.data.publishing.ckan2zenodo.model.zenodo.ZenodoDeposition;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonInclude.Include;
|
||||
import com.fasterxml.jackson.core.JsonProcessingException;
|
||||
import com.fasterxml.jackson.databind.DeserializationFeature;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.fasterxml.jackson.databind.SerializationFeature;
|
||||
|
||||
public class Tester {
|
||||
|
||||
public static String expression = "^\\/dataset(\\?([a-zA-Z0-9_.-]*.+))*";
|
||||
public static String toMatch = "/dataset?systemtype=E39_Actor&groups=huma_num___nakala";
|
||||
|
||||
private static ObjectMapper mapper = new ObjectMapper();
|
||||
|
||||
static {
|
||||
mapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES,false);
|
||||
mapper.configure(SerializationFeature.WRITE_EMPTY_JSON_ARRAYS, false);
|
||||
mapper.setSerializationInclusion(Include.NON_NULL);
|
||||
// mapper.configure(SerializationFeature.WRITE_DATES_AS_TIMESTAMPS, false);
|
||||
}
|
||||
|
||||
// public static void main(String[] args) {
|
||||
// Pattern p = Pattern.compile(expression);
|
||||
// Matcher m = p.matcher(toMatch);
|
||||
// boolean b = m.matches();
|
||||
//
|
||||
// System.out.println(b);
|
||||
//
|
||||
// }
|
||||
|
||||
|
||||
public static void main(String[] args) {
|
||||
Pattern p = Pattern.compile(expression);
|
||||
Matcher m = p.matcher(toMatch);
|
||||
boolean b = m.matches();
|
||||
|
||||
System.out.println(b);
|
||||
//ObjectMapper mapper = new ObjectMapper();
|
||||
ZenodoDeposition zed = new ZenodoDeposition();
|
||||
DepositionMetadata metadata = new DepositionMetadata();
|
||||
metadata.setPublication_date(Date.from(Instant.now()));
|
||||
//zed.setMetadata(metadata);
|
||||
|
||||
String serialized;
|
||||
try {
|
||||
System.out.println("init json: "+mapper.writeValueAsString(metadata));
|
||||
|
||||
serialized = "{\"metadata\":"+Fixer.fixIncoming(mapper.writeValueAsString(metadata))+"}";
|
||||
System.out.println("serialized: "+serialized);
|
||||
|
||||
Entity<String> JSON = Entity.json(serialized);
|
||||
System.out.println("JSON: "+JSON);
|
||||
ZenodoDeposition object = mapper.readValue(Fixer.fixIncoming(serialized), ZenodoDeposition.class);
|
||||
System.out.println("ZenodoDeposition: "+object);
|
||||
} catch (Exception e) {
|
||||
// TODO Auto-generated catch block
|
||||
e.printStackTrace();
|
||||
}
|
||||
|
||||
//System.out.println(metadata.getPublication_date());
|
||||
|
||||
// try {
|
||||
// updateMetadata(metadata);
|
||||
// } catch (ZenodoException e) {
|
||||
// // TODO Auto-generated catch block
|
||||
// e.printStackTrace();
|
||||
// }
|
||||
}
|
||||
|
||||
private static ZenodoDeposition updateMetadata(DepositionMetadata meta) throws ZenodoException {
|
||||
try{
|
||||
String serialized="{\"metadata\":"+Fixer.fixIncoming(mapper.writeValueAsString(meta))+"}";
|
||||
System.out.println("serialized: "+serialized);
|
||||
try {
|
||||
// Response resp = getWebClient().target(credentials.getBaseUrl()).
|
||||
// path(DEPOSITION_BASE_URL).path(depositionId+"").
|
||||
// queryParam(ACCESS_TOKEN, credentials.getKey()).request(CONTENT_TYPE)
|
||||
// .put(Entity.json(serialized));
|
||||
// return check(resp,ZenodoDeposition.class);
|
||||
|
||||
Entity<String> JSON = Entity.json(serialized);
|
||||
System.out.println("JSON: "+JSON);
|
||||
return mapper.readValue(Fixer.fixIncoming(serialized), ZenodoDeposition.class);
|
||||
}catch(Throwable t) {
|
||||
System.out.println("Error while tryin to update "+serialized);
|
||||
return null;
|
||||
}
|
||||
}catch(JsonProcessingException e) {
|
||||
System.out.println("Error while parsing "+meta + " " +e);
|
||||
throw new ZenodoException("Internal error.",e);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
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