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ckan2zenodo-library
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Clients basic implementation

This commit is contained in:
Fabio Sinibaldi 2019-11-22 18:17:10 +01:00
parent 5f825a1cb2
commit ed65a6879e
6 changed files with 240 additions and 25 deletions
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79
ckan2zenodo-library/pom.xml
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@ -1,27 +1,66 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.gcube.tools</groupId>
<artifactId>maven-parent</artifactId>
<version>1.1.0</version>
</parent>
<groupId>org.gcube.data.publishing</groupId>
<artifactId>ckan2zenodo-library</artifactId>
<version>0.0.1-SNAPSHOT</version>
<name>CKAN 2 Zenodo Library</name>
<description>Library to publish d4science CKAN items into Zenodo</description>
<dependencies>
<!-- EXTERNAL -->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.gcube.tools</groupId>
<artifactId>maven-parent</artifactId>
<version>1.1.0</version>
</parent>
<groupId>org.gcube.data.publishing</groupId>
<artifactId>ckan2zenodo-library</artifactId>
<version>0.0.1-SNAPSHOT</version>
<name>CKAN 2 Zenodo Library</name>
<description>Library to publish d4science CKAN items into Zenodo</description>
<properties>
<distroDirectory>${project.basedir}/distro</distroDirectory>
<gitBaseUrl>https://code-repo.d4science.org/gCubeSystem/</gitBaseUrl>
</properties>
<scm>
<connection>scm:git:${gitBaseUrl}/${project.artifactId}.git</connection>
<developerConnection>scm:git:${gitBaseUrl}/${project.artifactId}.git</developerConnection>
<url>${gitBaseUrl}/${project.artifactId}.git</url>
</scm>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>org.gcube.distribution</groupId>
<artifactId>gcube-bom</artifactId>
<version>1.3.1</version>
<type>pom</type>
<scope>import</scope>
</dependency>
<dependency>
<groupId>org.gcube.distribution</groupId>
<artifactId>gcube-smartgears-bom</artifactId>
<version>1.0.2</version>
<type>pom</type>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<dependency>
<groupId>org.gcube.data-publishing</groupId>
<artifactId>gcat-client</artifactId>
<version>[1.2.0,2.0.0-SNAPSHOT)</version>
</dependency>
<!-- EXTERNAL -->
<!-- lombok -->
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<version>1.14.8</version>
</dependency>
</dependencies>
</dependencies>
</project>

23
ckan2zenodo-library/src/main/java/org/gcube/data/publishing/ckan2zenodo/clients/GCat.java Normal file
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package org.gcube.data.publishing.ckan2zenodo.clients;
import java.net.MalformedURLException;
import org.gcube.data.publishing.ckan2zenodo.model.CkanItemDescriptor;
import org.gcube.gcat.client.Item;
public class GCat {
public CkanItemDescriptor getByID(String itemName) throws MalformedURLException {
CkanItemDescriptor toReturn=new CkanItemDescriptor();
toReturn.setContent(new Item().read(itemName));
toReturn.setItemName(itemName);
return toReturn;
}
public void updateItem(CkanItemDescriptor toUpdate) throws MalformedURLException {
new Item().update(toUpdate.getItemName(), toUpdate.getContent());
}
}

61
ckan2zenodo-library/src/main/java/org/gcube/data/publishing/ckan2zenodo/clients/Zenodo.java Normal file
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package org.gcube.data.publishing.ckan2zenodo.clients;
import javax.ws.rs.client.Client;
import javax.ws.rs.client.ClientBuilder;
import javax.ws.rs.core.Response;
import org.gcube.data.publishing.ckan2zenodo.model.faults.ZenodoException;
import org.gcube.data.publishing.ckan2zenodo.model.zenodo.ZenodoDeposition;
import org.glassfish.jersey.client.ClientProperties;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
@RequiredArgsConstructor
public class Zenodo {
private static final String BASE_URL="https://zenodo.org/api/";
private static final String CONTENT_TYPE="application/json";
private static final String DEPOSITION_BASE_URL="deposit/depositions";
private static final String AUTH="Authentication";
private static final String BEARER="Bearer ";
@NonNull
private String tokenValue;
Client client;
private synchronized Client getWebClient() {
if(client==null)
client = ClientBuilder.newClient(
// new ClientConfig().register(new HTTPBasicProvider(username, password))
)
.property(ClientProperties.SUPPRESS_HTTP_COMPLIANCE_VALIDATION, true);
return client;
}
public ZenodoDeposition readDeposition(String id) throws ZenodoException {
// String respString=null;
return getWebClient().target(BASE_URL).
path(DEPOSITION_BASE_URL).path(id).request(CONTENT_TYPE)
.header(AUTH, BEARER+tokenValue)
.get(ZenodoDeposition.class);
// respString=check(resp);
}
private static String check(Response resp) throws ZenodoException {
if(resp.getStatus()<200||resp.getStatus()>=300) {
throw new ZenodoException("RESP STATUS IS "+resp.getStatus()+". Message : "+resp.readEntity(String.class));
}else
return resp.readEntity(String.class);
}
}

14
ckan2zenodo-library/src/main/java/org/gcube/data/publishing/ckan2zenodo/model/CkanItemDescriptor.java
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@ -1,12 +1,24 @@
package org.gcube.data.publishing.ckan2zenodo.model;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.NonNull;
@Data
@NoArgsConstructor
public class CkanItemDescriptor {
@NonNull
private String itemId;
private String itemName;
@NonNull
private String content;
public String readField(String jsonContent,String field) {
throw new RuntimeException("Implement this");
}
public void writeField(String fieldName,String fieldValue) {
throw new RuntimeException("Implement this");
}
}

37
ckan2zenodo-library/src/main/java/org/gcube/data/publishing/ckan2zenodo/model/faults/ZenodoException.java Normal file
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package org.gcube.data.publishing.ckan2zenodo.model.faults;
public class ZenodoException extends Exception{
/**
*
*/
private static final long serialVersionUID = 4687842770251881142L;
public ZenodoException() {
super();
// TODO Auto-generated constructor stub
}
public ZenodoException(String arg0, Throwable arg1, boolean arg2, boolean arg3) {
super(arg0, arg1, arg2, arg3);
// TODO Auto-generated constructor stub
}
public ZenodoException(String arg0, Throwable arg1) {
super(arg0, arg1);
// TODO Auto-generated constructor stub
}
public ZenodoException(String arg0) {
super(arg0);
// TODO Auto-generated constructor stub
}
public ZenodoException(Throwable arg0) {
super(arg0);
// TODO Auto-generated constructor stub
}
}

51
ckan2zenodo-library/src/main/java/org/gcube/data/publishing/ckan2zenodo/model/zenodo/DepositionMetadata.java
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@ -10,15 +10,58 @@ import lombok.NoArgsConstructor;
@NoArgsConstructor
public class DepositionMetadata {
private String upload_type; // TODO ENUM
private String publication_type; //TODO ENUM
private String image_type; //TODO ENUM
public static enum UploadType{
publication,
poster,
presentation,
dataset,
image,
video,
software,
lesson,
other
}
public static enum PublicationType{
annotationcollection,
book,
section,
conferencepaper,
datamanagementplan,
article,
patent,
preprint,
deliverable,
milestone,
proposal,
report,
softwaredocumentation,
taxonomictreatment,
techincalnote,
thesis,
workingpaper,
other
}
public static enum ImageType{
figure,
plot,
drawing,
diagram,
photo,
other
}
private UploadType upload_type;
private PublicationType publication_type;
private ImageType image_type;
private Date publication_date;
private String title;
private ArrayList<Creator> creators;
private String description; // TODO HTML
private String access_rights;
private String license; // TODO ENUM
private String license; // TODO ENUM https://licenses.opendefinition.org/licenses/groups/all.json
private Date embargo_date;
private String access_conditions; // TODO HTML
private String doi;