Fixes #22228

src/main/java/org/gcube/data/publishing/ckan2zenodo/TransformerManager.java

@@ -9,6 +9,7 @@ import org.gcube.data.publishing.ckan2zenodo.commons.IS;
 import org.gcube.data.publishing.ckan2zenodo.model.faults.ConfigurationException;
 
 import lombok.Synchronized;
+import org.gcube.data.publishing.ckan2zenodo.model.parsing.Mappings;
 
 
 public class TransformerManager {
@@ -28,8 +29,11 @@ public class TransformerManager {
 
 	public Translator getByProfile(String profile) throws ConfigurationException {
 		for(GenericResource r: IS.queryForGenericResources("Ckan-Zenodo-Mappings")){
-			if (r.profile().name().equals(profile))
-				return new Translator(IS.readMappings(r));
+			if (r.profile().name().equals(profile)) {
+				Mappings m = IS.readMappings(r);
+				if(m == null) return new Translator();
+				else return  new Translator(m);
+			}
 		}
 		throw new ConfigurationException("No specific mapping for the catalogue item has been configured. "
 				+ "By continuing with the upload some metadata might not be upload to Zenodo.");

src/main/java/org/gcube/data/publishing/ckan2zenodo/commons/IS.java

@@ -5,6 +5,7 @@ import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
 
 import java.io.StringReader;
 import java.util.ArrayList;
+import java.util.Collections;
 import java.util.List;
 
 import javax.xml.bind.JAXBContext;
@@ -17,6 +18,7 @@ import org.gcube.common.resources.gcore.ServiceEndpoint;
 import org.gcube.data.publishing.ckan2zenodo.model.faults.ConfigurationException;
 import org.gcube.data.publishing.ckan2zenodo.model.parsing.Mapping;
 import org.gcube.data.publishing.ckan2zenodo.model.parsing.Mappings;
+import org.gcube.data.publishing.ckan2zenodo.model.parsing.ResourceFilter;
 import org.gcube.resources.discovery.client.api.DiscoveryClient;
 import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
 
@@ -60,9 +62,10 @@ public class IS {
 	        Unmarshaller um=JAXBContext.newInstance(Mappings.class).createUnmarshaller();
 	        
 
-	        return (Mappings) um.unmarshal(new StreamSource(new StringReader(body)));
-
-			
+	        Mappings m= (Mappings) um.unmarshal(new StreamSource(new StringReader(body)));
+			if(m.getMappings()==null) m.setMappings(Collections.emptyList());
+			if(m.getResourceFilters()==null||m.getResourceFilters().getFilters().isEmpty()) m.setResourceFilters(ResourceFilter.PASS_ALL);
+			return m;
 		}catch(Throwable t) {
 			log.debug("Error while parsing mapping from resource "+res.id()+" name : "+res.profile().name(),t);
 			throw new ConfigurationException("Invaild mapping resource "+res.id()+" name : "+res.profile().name(),t);

src/test/java/org/gcube/tests/EnvironmentCheckTests.java

@@ -2,12 +2,15 @@ package org.gcube.tests;
 
 import org.gcube.data.publishing.ckan2zenodo.Ckan2Zenodo;
 import org.gcube.data.publishing.ckan2zenodo.Ckan2ZenodoImpl;
+import org.gcube.data.publishing.ckan2zenodo.model.faults.*;
 import org.gcube.data.publishing.ckan2zenodo.model.report.EnvironmentReport;
 import org.junit.Assume;
 import org.junit.Test;
 
 public class EnvironmentCheckTests {
 
+    String context="/pred4s/preprod/preVRE";
+
     @Test
     public void failCheckEnvironemnt(){
         TokenSetter.set("/gcube");
@@ -19,10 +22,21 @@ public class EnvironmentCheckTests {
 
     @Test
     public void okCheckEnvironemnt(){
-        TokenSetter.set("/pred4s/preprod/preVRE");
+        TokenSetter.set(context);
         Ckan2Zenodo client=new Ckan2ZenodoImpl();
         EnvironmentReport report=client.checkEnvironment();
         Assume.assumeTrue(report.isok());
         System.out.println(report);
     }
+
+    @Test
+    public void checkMappings() throws GcatException, TransformationException, ConfigurationException, InvalidItemException, ZenodoException {
+        TokenSetter.set(context);
+        Ckan2Zenodo client=new Ckan2ZenodoImpl();
+
+        client.translate(client.read("knime_workflow_with_joined_consumer_phase_and_dose_response_model"));
+//        client.translate(client.read("lwr_in_prevre"));
+    client.translate(client.read("xyextractor_in_prevre"));
+
+    }
 }