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21 Commits

@ -8,9 +8,9 @@
"inputParameters" : ["token", "descriptor"],
"tasks" : [
{
"name": "LAMBDA_TASK",
"name": "INLINE_TASK",
"taskReferenceName": "init",
"type": "LAMBDA",
"type": "INLINE",
"inputParameters": {
"downloads" : "${workflow.input.descriptor.downloads.*}",
"storagehub" : "{{ storagehub }}",
@ -19,30 +19,35 @@
"auth" : "Bearer ${workflow.input.token}",
"parentfolder" : "Blue-Cloud Data Pool",
"folder" : "${workflow.input.descriptor.userOrderName}-${workflow.input.descriptor.orderNumber}",
"bcc" : ["prog@maris.nl","marco.lettere@nubisware.com"],
"bcc" : ["prog@maris.nl","orchestrator@d4science.org"],
"max_download_size" : 16106127360,
"scriptExpression": "1 === 1"
"evaluatorType" : "javascript",
"expression": "function f(){return { folder : $.folder.replace(/[<>&:/|?%\\[\\]\\\\]/g,' ').trim()}} f()"
}
},
{
"name" : "http",
"taskReferenceName" : "get_workspace",
"type" : "HTTP",
"inputParameters" : {
"http_request": {
"uri" : "${init.input.storagehub}/workspace",
"method" : "GET",
"headers" : { "Authorization" : "${init.input.auth}" }
}
}
"name" : "pyrest",
"taskReferenceName" : "get_workspace",
"type" : "SIMPLE",
"inputParameters" : {
"url" : "${init.input.storagehub}/workspace",
"method" : "GET",
"headers" : {
"Authorization" : "${init.input.auth}",
"Accept" : "application/json"
}
},
"retryCount" : 5,
"retryDelaySeconds": 10
},
{
"name": "LAMBDA_TASK",
"name": "INLINE_TASK",
"taskReferenceName": "init2",
"type": "LAMBDA",
"type": "INLINE",
"inputParameters": {
"workspace_root_folder_id" : "${get_workspace.output.response.body.item.id}",
"scriptExpression": "1 === 1"
"workspace_root_folder_id" : "${get_workspace.output.body.item.id}",
"evaluatorType" : "javascript",
"expression": "1 === 1"
}
},
{
@ -53,18 +58,22 @@
"http_request": {
"uri" : "${init.input.storagehub}/workspace/items/${init2.input.workspace_root_folder_id}/items/${init.input.parentfolder}",
"method" : "GET",
"readTimeOut" : 1000,
"headers" : { "Authorization" : "${init.input.auth}" }
}
}
},
"retryCount" : 5,
"retryDelaySeconds": 10
},
{
"name": "decision",
"taskReferenceName": "check_user_existance",
"taskReferenceName": "check_folder_existance",
"inputParameters": {
"folders": "${check_folder.output.response.body.itemlist}"
},
"type": "DECISION",
"caseExpression": "($.folders.length === 0 ? 'create' : 'exists')",
"type": "SWITCH",
"evaluatorType" : "javascript",
"expression": "($.folders.length === 0 ? 'create' : 'exists')",
"decisionCases": {
"create": [
{
@ -109,42 +118,102 @@
},
{
"name" : "pyrest",
"taskReferenceName" : "create_destination_folder",
"taskReferenceName" : "check_destination_folder",
"type" : "SIMPLE",
"inputParameters" : {
"url" : "${init.input.storagehub}/workspace/items/${workflow.variables.parent_folder_id}/create/FOLDER",
"method" : "POST",
"url" : "${init.input.storagehub}/workspace/items/${workflow.variables.parent_folder_id}/items/${init.output.result.folder}",
"expect" : [200, 404],
"method" : "GET",
"headers" : {
"Content-type": "application/x-www-form-urlencoded",
"Accept" : "text/plain",
"Authorization" : "${init.input.auth}"
},
"body" : {
"name" : "${init.input.folder}",
"description" : "Target folder of Bluecloud data downloads",
"hidden" : "false"
"Authorization" : "${init.input.auth}",
"Accept" : "application/json"
}
}
},
"retryCount" : 5,
"retryDelaySeconds": 10
},
{
"type": "SET_VARIABLE",
"name": "store_target_folderid",
"taskReferenceName": "store_target_folderid",
"inputParameters": {
"target_folder_id": "${create_destination_folder.output.body}"
}
"name": "decision",
"taskReferenceName": "check_destination_folder_existance",
"inputParameters": {
"folders": "${check_destination_folder.output.body.itemlist}",
"status": "${check_destination_folder.output.status}"
},
"type": "SWITCH",
"evaluatorType" : "javascript",
"expression": "((($.folders && $.folders.length === 0) || $.status === 404) ? 'create' : 'exists')",
"decisionCases": {
"create": [
{
"name" : "pyrest",
"taskReferenceName" : "create_destination_folder",
"type" : "SIMPLE",
"inputParameters" : {
"url" : "${init.input.storagehub}/workspace/items/${workflow.variables.parent_folder_id}/create/FOLDER",
"method" : "POST",
"headers" : {
"Content-type": "application/x-www-form-urlencoded",
"Accept" : "text/plain",
"Authorization" : "${init.input.auth}"
},
"body" : {
"name" : "${init.output.result.folder}",
"description" : "Target folder of Bluecloud data downloads",
"hidden" : "false"
}
}
},
{
"type": "SET_VARIABLE",
"name": "store_target_folderid",
"taskReferenceName": "store_target_folderid",
"inputParameters": {
"target_folder_id": "${create_destination_folder.output.body}"
}
},
{
"name" : "pyrest",
"taskReferenceName" : "ensure_destination_folder",
"type" : "SIMPLE",
"retryCount" : 5,
"retryDelaySeconds": 10,
"inputParameters" : {
"url" : "${init.input.storagehub}/workspace/items/${workflow.variables.target_folder_id}/items",
"method" : "GET",
"headers" : {
"Accept" : "application/json",
"Authorization" : "${init.input.auth}"
}
}
}
],
"exists" : [
{
"name": "terminate",
"taskReferenceName": "duplicate_folder",
"inputParameters": {
"terminationStatus": "FAILED",
"workflowOutput": "Order already processed."
},
"type": "TERMINATE",
"startDelay": 0,
"optional": false
}
]
}
},
{
"name": "LAMBDA_TASK",
"name": "INLINE_TASK",
"taskReferenceName": "build_transfer_tasks",
"type": "LAMBDA",
"type": "INLINE",
"inputParameters": {
"downloads" : "${workflow.input.descriptor.downloads.*}",
"upload" : "${init.input.storagehub}/workspace/items/${workflow.variables.target_folder_id}/create/ARCHIVE",
"auth" : "Bearer ${workflow.input.token}",
"description" : "${workflow.input.descriptor.userOrderName}",
"max" : "${init.input.max_download_size}",
"scriptExpression": "inputs={};tasks=[];rejected=[];for(var i=0;i<$.downloads.length;i++) if($.downloads[i].size > $.max) rejected.push($.downloads[i]); else download=$.downloads[i],tasks.push({name:'pyrestbridge',type:'SIMPLE',taskReferenceName:'downloads_'+i}),inputs['downloads_'+i]={ fail : false, datamap : { place: 'files', name : 'file'}, endpoint1 : { url: download.url}, endpoint2 : { url: $.upload, headers: { Authorization : $.auth}, files: { parentFolderName : 'download_' + download.number}} };return {tasks:Java.to(tasks,'java.util.Map[]'),rejected:Java.to(rejected,'java.util.Map[]'),inputs:inputs};"
"evaluatorType" : "javascript",
"expression": "inputs={};tasks=[];rejected=[];function f(){for(var i=0;i<$.downloads.length;i++) if($.downloads[i].size > $.max) rejected.push($.downloads[i]); else download=$.downloads[i],tasks.push({name:'pyrestbridge',type:'SIMPLE',taskReferenceName:'downloads_'+i}),inputs['downloads_'+i]={ fail : false, datamap : { place: 'files', name : 'file'}, endpoint1 : { url: download.url}, endpoint2 : { url: $.upload, headers: { Authorization : $.auth}, files: { parentFolderName : 'download_' + download.number}} };return {tasks:Java.to(tasks,'java.util.Map[]'),rejected:Java.to(rejected,'java.util.Map[]'),inputs:inputs};} f()"
}
},
{
@ -170,14 +239,15 @@
"forkTasks" : [
[
{
"name": "LAMBDA_TASK",
"name": "INLINE_TASK",
"taskReferenceName": "build_json_report",
"type": "LAMBDA",
"type": "INLINE",
"inputParameters": {
"input" : "${workflow.input.descriptor}",
"output" : "${join_parallel_downloads.output}",
"rejected" : "${build_transfer_tasks.output.result.rejected}",
"scriptExpression": "var k,report={requestId:$.input.requestId,orderNumber:$.input.orderNumber,errors:[]},keys=[],errors=[];for(var k in $.output) keys.push(k);keys.sort();for(k in keys){var index=keys[k].split('_')[1],o=$.output[keys[k]];o.endpoint1.error&&errors.push({url:$.input.downloads[index].url,number:index,error_number:1002,error_message:o.endpoint1.error}),o.endpoint2.error&&errors.push({url:$.input.descriptor.downloads[index].url,number:index,error_number:9999,error_message:o.endpoint2.error})};for(var r=0; r< $.rejected.length;r++) errors.push({url:$.rejected[r].url,number:$.rejected[r].number,error_number:9999,error_message:'Rejected because size is larger than allowed (16GB)'});report['errors']=Java.to(errors,'java.util.Map[]');return {report:report}"
"evaluatorType" : "javascript",
"expression": "var k,report={requestId:$.input.requestId,orderNumber:$.input.orderNumber,errors:[]},keys=[],errors=[];for(var k in $.output) keys.push(k);keys.sort();for(k in keys){var index=keys[k].split('_')[1],o=$.output[keys[k]];o.endpoint1.error&&errors.push({url:$.input.downloads[index].url,number:index,error_number:1002,error_message:o.endpoint1.error}),o.endpoint2.error&&errors.push({url:$.input.downloads[index].url,number:index,error_number:9999,error_message:o.endpoint2.error})};for(var r=0; r< $.rejected.length;r++) errors.push({url:$.rejected[r].url,number:$.rejected[r].number,error_number:9999,error_message:'Rejected because size is larger than allowed (16GB)'});report['errors']=Java.to(errors,'java.util.Map[]');function f(){return {report:report}} f()"
}
},
{
@ -216,22 +286,24 @@
],
[
{
"name": "LAMBDA_TASK",
"name": "INLINE_TASK",
"taskReferenceName": "build_email_report",
"type": "LAMBDA",
"type": "INLINE",
"inputParameters": {
"input" : "${workflow.input.descriptor}",
"output" : "${join_parallel_downloads.output}",
"scriptExpression": "var k,report='<table style=\"border: solid 1px gray\"><thead style=\"background-color:rgba(0,0,0,.1)\"><tr><th>Download</th><th style=\"width:100%;text-align:left;\">Outcome</th><!--th>Link</th--></tr></thead><tbody>',keys=[];for(var k in $.output) keys.push(k);keys.sort();for(k in keys){var index=keys[k].split('_')[1];report+='<tr><td>'+(Number(index)+1)+'</td>';var o=$.output[keys[k]];o.endpoint1.error||o.endpoint2.error?report+='<td>'+(o.endpoint1.error||'')+(o.endpoint2.error||'')+'</td>':report+='<td>OK</td>',report+='</tr>'}report+='</tbody></table>';return { report : report}"
"evaluatorType" : "javascript",
"expression": "var k,report='<table style=\"border: solid 1px gray\"><thead style=\"background-color:rgba(0,0,0,.1)\"><tr><th>Download</th><th style=\"width:100%;text-align:left;\">Outcome</th><!--th>Link</th--></tr></thead><tbody>',keys=[];for(var k in $.output) keys.push(k);keys.sort();for(k in keys){var index=keys[k].split('_')[1];report+='<tr><td>'+(Number(index)+1)+'</td>';var o=$.output[keys[k]];o.endpoint1.error||o.endpoint2.error?report+='<td>'+(o.endpoint1.error||'')+(o.endpoint2.error||'')+'</td>':report+='<td>OK</td>',report+='</tr>'}report+='</tbody></table>'; function f(){return { report : report}} f()"
}
},
{
"name": "LAMBDA_TASK",
"name": "INLINE_TASK",
"taskReferenceName": "build_rejected_email_report",
"type": "LAMBDA",
"type": "INLINE",
"inputParameters": {
"rejected" : "${build_transfer_tasks.output.result.rejected}",
"scriptExpression": "if($.rejected.length === 0) return {report: ''}; var k,report='<p>REJECTED:</p><table style=\"border: solid 1px gray\"><thead style=\"background-color:rgba(0,0,0,.1)\"><tr><th>Download</th><th style=\"width:100%;text-align:left;\">Rejection reason</th></tr></thead><tbody>';for(var r=0; r< $.rejected.length;r++){report+='<tr><td>'+$.rejected[r].number+'</td><td>'+$.rejected[r].size+' bytes exceeds maximum allowed of 15Gb.</td></tr>'}report+='</tbody></table>';return { report : report}"
"evaluatorType" : "javascript",
"expression": "function f(){if($.rejected.length === 0) return {report: ''}; var k,report='<p>REJECTED:</p><table style=\"border: solid 1px gray\"><thead style=\"background-color:rgba(0,0,0,.1)\"><tr><th>Download</th><th style=\"width:100%;text-align:left;\">Rejection reason</th></tr></thead><tbody>';for(var r=0; r< $.rejected.length;r++){report+='<tr><td>'+$.rejected[r].number+'</td><td>'+$.rejected[r].size+' bytes exceeds maximum allowed of 15Gb.</td></tr>'}report+='</tbody></table>';return { report : report}} f()"
}
},
{
@ -250,7 +322,7 @@
"v3" : "${workflow.input.descriptor.orderNumber}",
"v4" : "${build_email_report.output.result.report}<br/>${build_rejected_email_report.output.result.report}",
"v5" : "${init.input.workspace}/group/${init.input.workspace_group}/workspace?itemid=${workflow.variables.target_folder_id}&operation=gotofolder",
"v6" : "${init.input.parentfolder}/${init.input.folder}"
"v6" : "${init.input.parentfolder}/${init.output.result.folder}"
}
}
}

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