forked from D-Net/dnet-hadoop
80 lines
2.9 KiB
XML
80 lines
2.9 KiB
XML
<workflow-app name="BioSchemaHarvester" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>workingPath</name>
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<value>/data/bioschema/ped/</value>
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<description>the working path</description>
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</property>
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<property>
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<name>sitemapUrl</name>
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<value>https://proteinensemble.org/sitemap2.xml.gz</value>
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</property>
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<property>
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<name>sitemapURLKey</name>
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<value>loc</value>
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</property>
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<property>
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<name>dynamic</name>
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<value>true</value>
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<description>the dynamic boolean determines if the scraper should start using selenium or JSOUP to scrape the information (dynamic and static respectively)</description>
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</property>
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<property>
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<name>maxScrapedPages</name>
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<value>10</value>
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<description>max number of pages that will be scraped, default: no limit</description>
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</property>
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<property>
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<name>rdfOutput</name>
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<value>nquads.seq</value>
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<description>rdf output of scraping step</description>
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</property>
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<property>
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<name>scraping_java_opts</name>
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<value>-Xmx4g -Dwebdriver.chrome.whitelistedIps=</value>
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<description>Used to configure the heap size for the map JVM process. Should be 80% of mapreduce.map.memory.mb.</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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</global>
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<start to="ResetWorkingPath"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="ResetWorkingPath">
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<fs>
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<delete path='${workingPath}${rdfOutput}'/>
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</fs>
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<ok to="bmuseScraping"/>
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<error to="Kill"/>
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</action>
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<action name="bmuseScraping">
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<java>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>oozie.launcher.mapreduce.user.classpath.first</name>
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<value>true</value>
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</property>
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</configuration>
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<main-class>eu.dnetlib.dhp.bmuse.bioschema.ScrapingJob</main-class>
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<java-opts>${scraping_java_opts}</java-opts>
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<arg>--nameNode</arg><arg>${nameNode}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--rdfOutput</arg><arg>${rdfOutput}</arg>
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<arg>--sitemapUrl</arg><arg>${sitemapUrl}</arg>
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<arg>--sitemapURLKey</arg><arg>${sitemapURLKey}</arg>
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<arg>--dynamic</arg><arg>${dynamic}</arg>
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</java>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |