package eu.dnetlib.dhp.countrypropagation; import static eu.dnetlib.dhp.PropagationConstant.*; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession; import java.util.ArrayList; import java.util.Set; import java.util.stream.Collectors; import org.apache.commons.io.IOUtils; import org.apache.hadoop.io.compress.GzipCodec; import org.apache.spark.SparkConf; import org.apache.spark.sql.*; import org.apache.spark.sql.Dataset; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.oaf.*; import scala.Tuple2; public class PrepareResultCountrySet { private static final Logger log = LoggerFactory.getLogger(PrepareResultCountrySet.class); private static final String RESULT_COUNTRYSET_QUERY = "SELECT id resultId, collect_set(country) countrySet " + "FROM ( SELECT id, country " + "FROM datasource_country JOIN cfhb ON cf = dataSourceId " + "UNION ALL " + "SELECT id, country FROM datasource_country " + "JOIN cfhb ON hb = dataSourceId ) tmp " + "GROUP BY id"; public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( PrepareResultCountrySet.class .getResourceAsStream( "/eu/dnetlib/dhp/countrypropagation/input_prepareresultcountry_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String datasourcecountrypath = parser.get("preparedInfoPath"); log.info("preparedInfoPath: {}", datasourcecountrypath); final String resultClassName = parser.get("resultTableName"); log.info("resultTableName: {}", resultClassName); Class resultClazz = (Class) Class.forName(resultClassName); SparkConf conf = new SparkConf(); conf.set("hive.metastore.uris", parser.get("hive_metastore_uris")); runWithSparkHiveSession( conf, isSparkSessionManaged, spark -> { removeOutputDir(spark, outputPath); getPotentialResultToUpdate( spark, inputPath, outputPath, datasourcecountrypath, resultClazz); }); } private static void getPotentialResultToUpdate( SparkSession spark, String inputPath, String outputPath, String datasourcecountrypath, Class resultClazz) { Dataset result = readPath(spark, inputPath, resultClazz); result.createOrReplaceTempView("result"); // log.info("number of results: {}", result.count()); createCfHbforResult(spark); Dataset datasource_country = readPath(spark, datasourcecountrypath, DatasourceCountry.class); datasource_country.createOrReplaceTempView("datasource_country"); // log.info("datasource_country number : {}", datasource_country.count()); spark .sql(RESULT_COUNTRYSET_QUERY) .as(Encoders.bean(ResultCountrySet.class)) .toJavaRDD() .mapToPair(value -> new Tuple2<>(value.getResultId(), value)) .reduceByKey((a, b) -> { ArrayList countryList = a.getCountrySet(); Set countryCodes = countryList .stream() .map(country -> country.getClassid()) .collect(Collectors.toSet()); b .getCountrySet() .stream() .forEach(c -> { if (!countryCodes.contains(c.getClassid())) { countryList.add(c); countryCodes.add(c.getClassid()); } }); a.setCountrySet(countryList); return a; }) .map(couple -> OBJECT_MAPPER.writeValueAsString(couple._2())) .saveAsTextFile(outputPath, GzipCodec.class); // .write() // .option("compression", "gzip") // .mode(SaveMode.Append) // .json(outputPath); } }