mainPath
/data/bioschema/ped
the working path of Bioschema stores
datasourceKey
ped
the key that identifies the datasource (eg ped, disprot)
profile
protein
resource profile (eg protein, gene)
Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]
oozie.launcher.mapreduce.user.classpath.first
true
eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode
--actionNEW_VERSION
--mdStoreID${mdStoreOutputId}
--mdStoreManagerURI${mdStoreManagerURI}
yarn-cluster
cluster
TransformJob
eu.dnetlib.dhp.bioschema.GenerateBioschemaDatasetSpark
dhp-aggregation-${projectVersion}.jar
--executor-memory=${sparkExecutorMemory}
--executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory}
--conf spark.sql.shuffle.partitions=3840
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--sourcePath${mainPath}/json-datacite
--targetPath${mainPath}/dataset
--exportLinkstrue
--datasourceKey${datasourceKey}
--profile${profile}
--masteryarn-cluster
oozie.launcher.mapreduce.user.classpath.first
true
eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode
--actionCOMMIT
--namenode${nameNode}
--mdStoreVersion${wf:actionData('StartTransaction')['mdStoreVersion']}
--mdStoreManagerURI${mdStoreManagerURI}
oozie.launcher.mapreduce.user.classpath.first
true
eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode
--actionREAD_UNLOCK
--mdStoreManagerURI${mdStoreManagerURI}
--readMDStoreId${wf:actionData('BeginRead')['mdStoreReadLockVersion']}
oozie.launcher.mapreduce.user.classpath.first
true
eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode
--actionROLLBACK
--mdStoreVersion${wf:actionData('StartTransaction')['mdStoreVersion']}
--mdStoreManagerURI${mdStoreManagerURI}