package eu.dnetlib.doiboost.orcid import java.io.IOException import eu.dnetlib.dhp.schema.oaf.{Author, Publication} import eu.dnetlib.doiboost.DoiBoostMappingUtil import eu.dnetlib.doiboost.DoiBoostMappingUtil.{ORCID, PID_TYPES, createSP, generateDataInfo, generateIdentifier} import eu.dnetlib.doiboost.crossref.Crossref2Oaf import org.apache.commons.lang.StringUtils import org.codehaus.jackson.map.ObjectMapper import org.json4s import org.json4s.DefaultFormats import org.json4s.jackson.JsonMethods.parse import org.slf4j.{Logger, LoggerFactory} import scala.collection.JavaConverters._ case class ORCIDItem(oid:String,name:String,surname:String,creditName:String,errorCode:String){} case class ORCIDElement(doi:String, authors:List[ORCIDItem]) {} object ORCIDToOAF { val logger: Logger = LoggerFactory.getLogger(Crossref2Oaf.getClass) val mapper = new ObjectMapper def isJsonValid(inputStr: String): Boolean = { import java.io.IOException try { mapper.readTree(inputStr) true } catch { case e: IOException => false } } def extractValueFromInputString(input: String): (String, String) = { val i = input.indexOf('[') if (i <5) { return null } val orcidList = input.substring(i, input.length - 1) val doi = input.substring(1, i - 1) if (isJsonValid(orcidList)) { (doi, orcidList) } else null } def convertTOOAF(input:ORCIDElement) :Publication = { val doi = input.doi val pub:Publication = new Publication pub.setPid(List(createSP(doi, "doi", PID_TYPES)).asJava) pub.setDataInfo(generateDataInfo()) pub.setId(generateIdentifier(pub, doi.toLowerCase)) try{ pub.setAuthor(input.authors.map(a=> { generateAuhtor(a.name, a.surname, a.creditName, a.oid) }).asJava) pub.setCollectedfrom(List(DoiBoostMappingUtil.createORIDCollectedFrom()).asJava) pub.setDataInfo(DoiBoostMappingUtil.generateDataInfo()) pub } catch { case e: Throwable => logger.info(s"ERROR ON GENERATE Publication from $input") null } } def generateAuhtor(given: String, family: String, fullName:String, orcid: String): Author = { val a = new Author a.setName(given) a.setSurname(family) if (fullName!= null && fullName.nonEmpty) a.setFullname(fullName) else a.setFullname(s"$given $family") if (StringUtils.isNotBlank(orcid)) a.setPid(List(createSP(orcid, ORCID, PID_TYPES)).asJava) a } }