dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/bioschema/model/BioSchemaProtein.java

@@ -50,8 +50,6 @@ public class BioSchemaProtein {
 		private Link mainEntityOfPage;
 		@JsonProperty("https://schema.org/citation")
 		private Citation citation;
-		@JsonProperty("https://schema.org/hasSequenceAnnotation")
-		private SequenceAnnotation sequenceAnnotation;
 
 		public String getId() {
 			return id;
@@ -192,14 +190,6 @@ public class BioSchemaProtein {
 			this.mainEntityOfPage = mainEntityOfPage;
 		}
 
-		public SequenceAnnotation getSequenceAnnotation() {
-			return sequenceAnnotation;
-		}
-
-		public void setSequenceAnnotation(SequenceAnnotation sequenceAnnotation) {
-			this.sequenceAnnotation = sequenceAnnotation;
-		}
-
 		public Citation getCitation() {
 			return citation;
 		}
@@ -357,65 +347,6 @@ public class BioSchemaProtein {
 		}
 	}
 
-	public static class SequenceAnnotation {
-		@JsonProperty("https://schema.org/additionalProperty")
-		private List<AdditionalProperty> additionalProperty;
-
-		public List<AdditionalProperty> getAdditionalProperty() {
-			return additionalProperty;
-		}
-
-		public void setAdditionalProperty(List<AdditionalProperty> additionalProperty) {
-			this.additionalProperty = additionalProperty;
-		}
-	}
-
-	public static class AdditionalProperty {
-		@JsonProperty("https://schema.org/value")
-		private List<PropertyValue> propertyValue;
-
-		public List<PropertyValue> getPropertyValue() {
-			return propertyValue;
-		}
-
-		public void setPropertyValue(List<PropertyValue> propertyValue) {
-			this.propertyValue = propertyValue;
-		}
-	}
-
-	public static class PropertyValue {
-		@JsonProperty("@id")
-		private String id;
-		@JsonProperty("https://schema.org/termCode")
-		private String termCode;
-		@JsonProperty("https://schema.org/name")
-		private String name;
-
-		public String getId() {
-			return id;
-		}
-
-		public void setId(String id) {
-			this.id = id;
-		}
-
-		public String getTermCode() {
-			return termCode;
-		}
-
-		public void setTermCode(String termCode) {
-			this.termCode = termCode;
-		}
-
-		public String getName() {
-			return name;
-		}
-
-		public void setName(String name) {
-			this.name = name;
-		}
-	}
-
 	public String getId() {
 		return id;
 	}

dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/utils/RDFConverter.java

@@ -161,7 +161,7 @@ public class RDFConverter {
 
 				if (entry.getSameAs() != null) {
 					entry.getSameAs().stream().filter(Objects::nonNull).forEach(sameAs -> {
-						log.debug("sameAs value: " + sameAs.getId());
+						log.debug("sameAs: " + sameAs.getId());
 						addRelatedIdentifier(dataciteProtein, sameAs.getId(), "IsIdenticalTo");
 					});
 				}
@@ -173,10 +173,6 @@ public class RDFConverter {
 					});
 				}
 
-				if (entry.getSequenceAnnotation() !=null) {
-					log.debug("Sequence Annotation found " );
-				}
-
 				String proteinId = "";
 				try {
 					String[] identifierParts = dataciteProtein.getIdentifiers().get(0).getIdentifier().split("/");

dhp-workflows/pom.xml

@@ -38,8 +38,6 @@
         <module>dhp-usage-raw-data-update</module>
         <module>dhp-broker-events</module>
         <module>dhp-doiboost</module>
-        <module>dhp-rdfconverter</module>
-        <module>dhp-bmuse</module>
     </modules>
 
     <pluginRepositories>

pom.xml

@@ -105,18 +105,6 @@
 				<enabled>false</enabled>
 			</snapshots>
 		</repository>
-		<repository>
-			<id>dnet-deps</id>
-			<name>D-Net Dependencies</name>
-			<url>https://maven.d4science.org/nexus/content/repositories/dnet-deps/</url>
-			<releases>
-				<enabled>true</enabled>
-			</releases>
-			<snapshots>
-				<enabled>false</enabled>
-			</snapshots>
-			<layout>default</layout>
-		</repository>
 	</repositories>
 
 	<dependencies>