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106 Commits

Author SHA1 Message Date
Claudio Atzori 3a11a387a9 data provision workflow enhancement: added nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed 2020-08-03 14:28:08 +02:00
Claudio Atzori cc5d13da85 introduced parameter shouldIndex (true|false) 2020-07-16 13:46:39 +02:00
Claudio Atzori b098cc3cbe avoid repeating identical values for fields: source, description 2020-07-16 13:45:53 +02:00
Claudio Atzori 7d6e269b40 reverted CreateRelatedEntitiesJob_phase1 to its previous state 2020-07-13 22:54:04 +02:00
Claudio Atzori 8e97598eb4 avoid to NPE in case of null instances 2020-07-13 20:46:14 +02:00
Claudio Atzori 06c1913062 added different limits for grouping by source and by target, incremented spark.sql.shuffle.partitions for the join operations 2020-07-10 19:03:33 +02:00
Claudio Atzori 4c3836f62e materialize the related entities before joining them 2020-07-10 19:00:44 +02:00
Claudio Atzori b21866a2da allow to set different to relations cut points by source and by target; adjusted weight assigned to relationship types 2020-07-10 13:59:48 +02:00
Claudio Atzori ff4d6214f1 experimenting with pruning of relations 2020-07-10 10:06:41 +02:00
Claudio Atzori b383ed42fa pass optional parameter relationFilter to the PrepareRelationJob implementation 2020-07-07 14:21:28 +02:00
Claudio Atzori d380b85246 unit test for the preparation of the relations 2020-07-02 12:42:13 +02:00
Claudio Atzori 7817338e05 added test to verify the relation pre-processing 2020-06-26 17:58:33 +02:00
Claudio Atzori 8d59fdf34e WIP: dataset based PrepareRelationsJob 2020-06-26 14:32:58 +02:00
Claudio Atzori 216975c4ec restored complete provision workflow 2020-06-25 12:55:52 +02:00
Claudio Atzori 93f627ea51 code formatting 2020-06-25 12:54:21 +02:00
Claudio Atzori e62333192c WIP: prepare relation job 2020-06-25 12:22:18 +02:00
Claudio Atzori 6933ec11fb WIP: prepare relation job 2020-06-25 11:04:12 +02:00
Sandro La Bruzzo a6c0faac70 added test to verify secondary sorting 2020-06-25 10:48:15 +02:00
Claudio Atzori 69b0391708 WIP: prepare relation job 2020-06-25 10:19:56 +02:00
Claudio Atzori 46e76affeb WIP: prepare relation job 2020-06-24 19:01:15 +02:00
Claudio Atzori 0e723d378b added default from vocab for missing instance.refereed; remove spurious prefixes from orcid values; WIP: prepare relation job 2020-06-24 18:34:42 +02:00
Claudio Atzori 463489f59f code formatting 2020-06-12 12:03:25 +02:00
Claudio Atzori 4bcad1c9c3 Merge branch 'graph_cleaning' 2020-06-12 11:40:25 +02:00
Alessia Bardi e79943965b Fixes #5604: field oamandatepublications in XML 2020-06-11 12:49:31 +02:00
Claudio Atzori 67c7b31ba6 Merge branch 'master' into graph_cleaning 2020-06-10 15:00:35 +02:00
Claudio Atzori ce12f236bb disabled test, need to need to update the joined_entity.json file 2020-06-09 20:07:36 +02:00
Claudio Atzori a2fdf85ba1 WIP: graph cleaner implementation 2020-06-09 19:52:53 +02:00
Claudio Atzori 05f269a1c0 kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob 2020-06-01 00:32:42 +02:00
Claudio Atzori 6f5f498c78 restored common properties driving executor-cores and executor-memory in join_organization_relations wf node 2020-05-29 11:22:00 +02:00
Claudio Atzori b2f9564f13 WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob 2020-05-29 10:58:15 +02:00
Claudio Atzori a57965a3ea limiting the dimensions of outliers 2020-05-28 17:36:37 +02:00
Claudio Atzori 821be1f8b6 experimental implementation of custom aggregation using kryo encoders 2020-05-28 13:53:13 +02:00
Claudio Atzori 83504ecace limiting the maximum number of authors allowed in XML records to MAX_AUTHORS = 200; authors with ORCID can exceed that limit 2020-05-28 13:52:30 +02:00
Claudio Atzori ef11593068 JoinedEntity.links defined as empty list by default 2020-05-28 13:50:44 +02:00
Claudio Atzori 5dea155a87 increased number of partitions produced by the join_all_entities phase as well as spark.sql.shuffle.partitions in adjancency_lists phase 2020-05-28 13:49:59 +02:00
Claudio Atzori fdd54bad1c code formatting 2020-05-27 19:31:54 +02:00
Claudio Atzori cfd753217c repartition the join_entities in 24k files 2020-05-27 12:44:01 +02:00
Claudio Atzori 2f1a623d09 sync from master branch 2020-05-27 12:39:58 +02:00
Claudio Atzori 9e4ec1543b updated test 2020-05-27 12:38:42 +02:00
Claudio Atzori 8047d16dd9 added RDD based adjacency list creation procedure 2020-05-27 12:38:12 +02:00
Claudio Atzori f057dcdf65 limit the max number of externalreferences to MAX_EXTERNAL_ENTITIES 2020-05-27 12:37:33 +02:00
Claudio Atzori 4e36d689dd fixed XML serialization for children sub-elements (duplicates & externalreferences) 2020-05-26 18:30:40 +02:00
Claudio Atzori b8e541a454 fixing repeated organization.websiteurl in organization entities (#5645) as well as project.ecinternationalorganizationeurinterests 2020-05-26 10:30:09 +02:00
Claudio Atzori 925d933204 making XmlRecordFactory immune to graph encoding changes (mostly to avoid NPEs) 2020-05-22 08:50:44 +02:00
Claudio Atzori b33dd58be4 replaced parameter 'reuseRecords' with 'resumeFrom', allowing to restart the provision workflow execution from any step, useful for manual submissions or debugging 2020-05-22 08:50:06 +02:00
Claudio Atzori dbfb9c19fe minor changes 2020-05-21 10:00:14 +02:00
Claudio Atzori d7d2a0637f added extra parameters to the provision indexing workflow 2020-05-20 14:55:38 +02:00
Claudio Atzori 0bdfbb0a57 reintroduced RDD based relation cut off procedure 2020-05-19 15:02:21 +02:00
Claudio Atzori 8c67073a07 force speculative execution to false 2020-05-08 09:42:21 +02:00
Claudio Atzori bac37b3973 fixed children expansion in XML records 2020-05-04 11:51:17 +02:00