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1052 Commits

Author SHA1 Message Date
Sandro La Bruzzo 991b06bd0b removed generation of EBI links from old dump, now EBI link dump is created by another wf 2021-10-05 10:21:33 +02:00
Miriam Baglioni e653756e3d applied some suggestiond from Sonar Lint 2021-10-04 18:40:07 +02:00
Miriam Baglioni 9814c3e700 mergin with branch beta 2021-10-01 13:00:03 +02:00
Miriam Baglioni c4ccd7b32c - 2021-10-01 12:59:47 +02:00
Miriam Baglioni c8321ad31a merge with branch beta 2021-10-01 12:59:08 +02:00
Claudio Atzori 60a6a9a583 [graph2hive] added field 'measures' to the result view 2021-09-30 09:27:26 +02:00
Claudio Atzori ebf53a1616 added cleaning for relation fields: subRelType & relClass according to dedicated vocabs 2021-09-15 16:10:37 +02:00
Sandro La Bruzzo e8b3cb9147 Implemented method to download delta updates in EBI Links 2021-08-30 09:32:45 +02:00
Alessia Bardi ccf4103a25 keep the original url if the decoder fails for any reason 2021-08-25 10:07:58 +02:00
Sandro La Bruzzo 45898c71ac fixed wrong doi in pubmed 2021-08-24 15:20:04 +02:00
Alessia Bardi 00a28c0080 originalId was renamed to acronym 2021-08-23 15:02:21 +02:00
Alessia Bardi f19b04d41b code formatting after mvn compile 2021-08-23 14:33:39 +02:00
Alessia Bardi 931f430129 Merge branch 'beta' into datasource_model_eosc_beta 2021-08-23 11:57:21 +02:00
Alessia Bardi 4c1474e693 Dealing with #6859#note-2: we have to decode URLs to avoid & and other chars encoded becasue of the original XML representation of data 2021-08-20 17:03:30 +02:00
Miriam Baglioni e5cf11d088 change open access route to result matching hbm to gold 2021-08-19 10:29:04 +02:00
Claudio Atzori f74adc4752 added DownloadCSV2 as alternative implementation of the same download procedure 2021-08-13 15:52:15 +02:00
Claudio Atzori 5f0903d50d fixed CSV downloader & tests 2021-08-13 14:17:54 +02:00
Claudio Atzori 17cefe6a97 [HBM] removed stale replace option 2021-08-13 12:43:59 +02:00
Claudio Atzori 7ee2757fcd fixed DownloadCSV parameters spec; workflow patching the hostedby replaces the graph content (publication, datasource) rather than creating a copy 2021-08-13 12:41:01 +02:00
Claudio Atzori c3ad4ab701 minor fixes 2021-08-13 12:23:15 +02:00
Claudio Atzori baed5e3337 test classes moved in specific components 2021-08-13 12:14:47 +02:00
Claudio Atzori 3359f73fcf cleanup & best practices 2021-08-13 12:00:42 +02:00
Miriam Baglioni f4ec81c92c mergin with branch beta 2021-08-13 10:31:35 +02:00
Miriam Baglioni 32fd75691f refactoring 2021-08-13 10:15:42 +02:00
Miriam Baglioni 01db1f8bc4 GetCSV refactoring - removed not needed import 2021-08-13 10:14:17 +02:00
Miriam Baglioni 964a46ca21 GetCSV refactoring - modified due to movement of classes 2021-08-13 10:11:18 +02:00
Miriam Baglioni eaf077fc34 GetCSV refactoring - removed not needed dependency 2021-08-13 10:08:58 +02:00
Claudio Atzori 9587d4aee8 Merge branch 'beta' into hostedbymap 2021-08-12 17:04:30 +02:00
Claudio Atzori 86d940044c added test to verify bad records from FWF-E-Book-Library 2021-08-12 11:32:56 +02:00
Claudio Atzori 8cdce59e0e [graph raw] let the mapping exceptions propagate 2021-08-12 11:32:26 +02:00
Miriam Baglioni 08dd2b2102 moving the dependency version to the external pom file 2021-08-11 18:09:41 +02:00
Miriam Baglioni 785db1d5b2 refactoring 2021-08-11 17:44:07 +02:00
Miriam Baglioni b966329833 reverting 2021-08-11 17:37:00 +02:00
Miriam Baglioni 8ad7c71417 reverting 2021-08-11 17:36:12 +02:00
Miriam Baglioni 0e1a6bec20 reverting 2021-08-11 17:32:29 +02:00
Miriam Baglioni c6a2a780a9 reverting 2021-08-11 17:30:17 +02:00
Miriam Baglioni 8229632839 adding assertions to the mapping of the unibi part of gold list 2021-08-11 16:36:01 +02:00
Miriam Baglioni b1c6140ebf removed all comments in Italian 2021-08-11 16:23:33 +02:00
Miriam Baglioni 8da3a25cf6 merging with branch beta 2021-08-11 15:55:34 +02:00
Claudio Atzori 9f4db73f30 updated/fixed unit tests 2021-08-11 15:02:51 +02:00
Claudio Atzori 61d811ba53 suggestions from intellij 2021-08-11 12:18:20 +02:00
Claudio Atzori 2ee21da43b suggestions from SonarLint 2021-08-11 12:13:22 +02:00
Miriam Baglioni b954fe9ba8 mergin with branch beta 2021-08-11 10:12:46 +02:00
Miriam Baglioni b688567db5 hostedbymap - modified part of test to check the bestaccessright changed 2021-08-11 10:12:10 +02:00
Miriam Baglioni 9731a6144a hostedbymap - in case the journal is open access the access may be changed also for the best access right in the result 2021-08-10 17:49:45 +02:00
Miriam Baglioni a90bac3bc9 Graph Dump - added method to test class to verify addition of validation date in projects for community result 2021-08-09 16:36:54 +02:00
Miriam Baglioni bd0d7bfba7 Graph Dump - added resources for testing addition of validation date in project for communityresult 2021-08-09 16:36:17 +02:00
Miriam Baglioni 8daaa32e90 Graph Dump - added resources for testing 2021-08-09 15:46:29 +02:00
Miriam Baglioni bc9e3a06ba Graph Dump - extended the test class 2021-08-09 15:46:06 +02:00
Miriam Baglioni 2efa5abda5 refactoring 2021-08-09 12:28:36 +02:00
Miriam Baglioni eff499af9f added new tests and changed the test example 2021-08-09 11:12:30 +02:00
Miriam Baglioni c3931557e3 extended the logic of the dump to consider the validation date in the relation (also in the dumped result for communities and funders at the level of the project), the extention on the instance for the APC, the pid, the alternate identifiers, and the extention of the AccessRight to store the OpenAccessRoute. Added new resourec for testing and extended the old class to verify the new dump. Fixed also issue on relation dump: only relation whose source and target are entities in the graph are dumped. The same hold for references to projects 2021-08-06 18:56:18 +02:00
Miriam Baglioni 6bd1eca7e0 merge branch with beta 2021-08-05 15:23:32 +02:00
Miriam Baglioni 73dc082927 added new dumped field (openaccessroute, pid and alternate identifier at the level of the instance) and the bipFinder measure at the level of the result 2021-08-05 15:20:50 +02:00
Miriam Baglioni ee13da9258 merge branch with master 2021-08-05 11:34:20 +02:00
Claudio Atzori 83c04e5d28 mapping test for dataset records adapted to reflect the delegated pid authority (zenodo) 2021-08-04 10:37:57 +02:00
Miriam Baglioni c7b71647c6 Hosted By Map - modification of the resource for testing the presence of only one entry per datasource id 2021-08-04 10:20:02 +02:00
Miriam Baglioni eb8c3f8594 Hosted By Map - test modified because of the application of the new aggregator on datasources 2021-08-04 10:19:17 +02:00
Miriam Baglioni e94ae0b1de Hosted By Map - extention of the workflow to consider also the application of the map to publications and datasources 2021-08-04 10:18:11 +02:00
Miriam Baglioni 67ba4c40e0 Hosted By Map - added parameter resources 2021-08-04 10:17:28 +02:00
Miriam Baglioni eccf3851b0 Hosted By Map - refactoring 2021-08-04 10:16:30 +02:00
Sandro La Bruzzo 74afe43c3a fixed wrong test file 2021-08-04 10:16:17 +02:00
Miriam Baglioni 1e952cccf6 Hosted By Map - refactoring and deletion of not needed methods 2021-08-04 10:15:43 +02:00
Miriam Baglioni 8ba8c77f92 Hosted By Map - refactoring 2021-08-04 10:14:57 +02:00
Miriam Baglioni 8f7623e77a Hosted By Map - refactoring and application of the new aggregator 2021-08-04 10:14:20 +02:00
Sandro La Bruzzo 3fc820203b fixed wrong test file 2021-08-04 10:13:59 +02:00
Miriam Baglioni a7bf314fd2 Hosted By Map - added new aggregator to get just one result per datasource id 2021-08-04 10:13:30 +02:00
Miriam Baglioni 100e54e6c8 mergin with branch beta 2021-08-03 10:47:11 +02:00
Miriam Baglioni 461b8a29a0 removed not needed class 2021-08-03 10:46:51 +02:00
Miriam Baglioni 327cddde33 Hosted By Map - refactoring 2021-08-03 10:44:13 +02:00
Miriam Baglioni 17292c6641 Hosted By Map - resources for testing purposes 2021-08-02 19:37:08 +02:00
Miriam Baglioni ee7ccb98dc Hosted By Map - test class to verify the application of the hbm to results and datasource 2021-08-02 19:36:18 +02:00
Miriam Baglioni 90e91486e2 Hosted By Map - test class to verify each step in the preparation process 2021-08-02 19:35:52 +02:00
Miriam Baglioni 1e859706a3 Hosted By Map - Classes to apply the HBM to results and datasources 2021-08-02 19:35:23 +02:00
Miriam Baglioni 72df8f9232 Hosted By Map - removed the aggregator for the datasource (it is no more needed) and added a new aggregator for the results. Changed also the hostedBYMap aggregator 2021-08-02 19:34:44 +02:00
Miriam Baglioni ff1ce75e33 Hosted By Map - modification in the code to prepare the info needed to apply the HostedByMap. There is no need to join datasources with the hbm: all the information needed is in the hosted by map already 2021-08-02 19:32:59 +02:00
Claudio Atzori e826aae848 using constants from ModelConstants 2021-08-02 14:28:59 +02:00
Miriam Baglioni 1695d45bd4 Hosted By Map - Test class to verify the preparation of the intermediate information 2021-07-30 17:57:01 +02:00
Miriam Baglioni 7c6ea2f4c7 Hosted By Map - first attempt for the creation of intermedia information to be used to applu the hosted by map on the graph entities 2021-07-30 17:56:27 +02:00
Miriam Baglioni d8b9b0553b Hosted By Map - model classes to store the intermediate information to be used to apply the hosted by map 2021-07-30 17:55:39 +02:00
Miriam Baglioni 613bd3bde0 Hosted By Map - refactor of the first attemp to prepare a new hosted by map dependent on the datasource in the graph and on two external sources: the gold list from unibi ad the doaj list of open access journal. Both the lists are downloaded from provided url parameter 2021-07-30 17:54:45 +02:00
Miriam Baglioni d1807781c0 mergin with branch beta 2021-07-30 14:34:07 +02:00
Miriam Baglioni 1d6ac3715b merge branch with beta 2021-07-30 11:58:29 +02:00
Claudio Atzori 19620eed46 applying PR#131, Patch the identifiers (source/target) in the relations, refinements 2021-07-30 11:09:32 +02:00
Claudio Atzori 4f78565c04 fixed implementation of PatchRelationsApplication, refined the relative unit test 2021-07-30 11:07:09 +02:00
Claudio Atzori a6a38cca9e fixed implementation of PatchRelationsApplication, refined the relative unit test 2021-07-30 11:06:11 +02:00
Miriam Baglioni 9bc4fd3b69 Patch FCT relations - fixed issue with join 2021-07-30 10:34:05 +02:00
Miriam Baglioni 2fc89fc9b5 Merge branch 'fct_project_id_replacement' of https://code-repo.d4science.org/D-Net/dnet-hadoop into fct_project_id_replacement 2021-07-30 10:20:43 +02:00
Claudio Atzori 081fe92a21 Merge branch 'fct_project_id_replacement' of https://code-repo.d4science.org/D-Net/dnet-hadoop into fct_project_id_replacement 2021-07-30 10:13:56 +02:00
Claudio Atzori 576693d782 added unit test for PatchRelationsApplication 2021-07-30 10:13:33 +02:00
Miriam Baglioni baad01cadc hostedbymap 2021-07-29 13:04:39 +02:00
Claudio Atzori e725c88ebb [raw_all] patching relation identifier phase to be run at the end, i.e. includes also claimed relations 2021-07-29 13:03:43 +02:00
Claudio Atzori 5d08ad86ae [raw_all] patching relation identifier phase to be run at the end, i.e. includes also claimed relations 2021-07-29 13:03:16 +02:00
Claudio Atzori e87e1805c4 [raw_all] added extra workflow step for patching the identifiers in the relations, given an id mapping dataset 2021-07-29 12:13:06 +02:00
Claudio Atzori 5f7330d407 Merge branch 'master' into fct_project_id_replacement 2021-07-29 11:38:22 +02:00
Claudio Atzori 1923c1ce21 replaced full join + filtering with a left join 2021-07-29 11:36:20 +02:00
Claudio Atzori a9961a1835 [cleaning] title cleaning based on the me.xuender:unidecode library 2021-07-28 16:36:33 +02:00
Claudio Atzori e1797c0a42 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-07-28 16:21:36 +02:00
Claudio Atzori 6dddad86ee [cleaning] title cleaning based on the me.xuender:unidecode library 2021-07-28 16:21:29 +02:00
Alessia Bardi c806387d4b tests for enermaps 2021-07-28 11:54:36 +02:00