code formatting

dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala

@@ -27,7 +27,8 @@ object SparkCreateBaselineDataFrame {
   def requestBaseLineUpdatePage(maxFile: String): List[(String, String)] = {
     val data = requestPage("https://ftp.ncbi.nlm.nih.gov/pubmed/updatefiles/")
 
-    val result = data.linesWithSeparators.map(l => l.stripLineEnd)
+    val result = data.linesWithSeparators
+      .map(l => l.stripLineEnd)
       .filter(l => l.startsWith("<a href="))
       .map { l =>
         val end = l.lastIndexOf("\">")

dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/sx/bio/BioScholixTest.scala

@@ -63,7 +63,9 @@ class BioScholixTest extends AbstractVocabularyTest {
     val records: String = Source
       .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/bio/pubmed_dump"))
       .mkString
-    val r: List[Oaf] = records.linesWithSeparators.map(l => l.stripLineEnd).toList
+    val r: List[Oaf] = records.linesWithSeparators
+      .map(l => l.stripLineEnd)
+      .toList
       .map(s => mapper.readValue(s, classOf[PMArticle]))
       .map(a => PubMedToOaf.convert(a, vocabularies))
     assertEquals(10, r.size)
@@ -175,7 +177,8 @@ class BioScholixTest extends AbstractVocabularyTest {
       .mkString
     records.linesWithSeparators.map(l => l.stripLineEnd).foreach(s => assertTrue(s.nonEmpty))
 
-    val result: List[Oaf] = records.linesWithSeparators.map(l => l.stripLineEnd).toList.flatMap(o => BioDBToOAF.pdbTOOaf(o))
+    val result: List[Oaf] =
+      records.linesWithSeparators.map(l => l.stripLineEnd).toList.flatMap(o => BioDBToOAF.pdbTOOaf(o))
 
     assertTrue(result.nonEmpty)
     result.foreach(r => assertNotNull(r))
@@ -196,7 +199,8 @@ class BioScholixTest extends AbstractVocabularyTest {
       .mkString
     records.linesWithSeparators.map(l => l.stripLineEnd).foreach(s => assertTrue(s.nonEmpty))
 
-    val result: List[Oaf] = records.linesWithSeparators.map(l => l.stripLineEnd).toList.flatMap(o => BioDBToOAF.uniprotToOAF(o))
+    val result: List[Oaf] =
+      records.linesWithSeparators.map(l => l.stripLineEnd).toList.flatMap(o => BioDBToOAF.uniprotToOAF(o))
 
     assertTrue(result.nonEmpty)
     result.foreach(r => assertNotNull(r))
@@ -241,7 +245,8 @@ class BioScholixTest extends AbstractVocabularyTest {
       .mkString
     records.linesWithSeparators.map(l => l.stripLineEnd).foreach(s => assertTrue(s.nonEmpty))
 
-    val result: List[Oaf] = records.linesWithSeparators.map(l => l.stripLineEnd).map(s => BioDBToOAF.crossrefLinksToOaf(s)).toList
+    val result: List[Oaf] =
+      records.linesWithSeparators.map(l => l.stripLineEnd).map(s => BioDBToOAF.crossrefLinksToOaf(s)).toList
 
     assertNotNull(result)
     assertTrue(result.nonEmpty)
@@ -280,10 +285,13 @@ class BioScholixTest extends AbstractVocabularyTest {
 
     implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
 
-    val l: List[ScholixResolved] = records.linesWithSeparators.map(l => l.stripLineEnd).map { input =>
+    val l: List[ScholixResolved] = records.linesWithSeparators
-      lazy val json = parse(input)
+      .map(l => l.stripLineEnd)
-      json.extract[ScholixResolved]
+      .map { input =>
-    }.toList
+        lazy val json = parse(input)
+        json.extract[ScholixResolved]
+      }
+      .toList
 
     val result: List[Oaf] = l.map(s => BioDBToOAF.scholixResolvedToOAF(s))
 

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java

@@ -48,10 +48,13 @@ public class ConversionUtils {
 
 	private static final Logger log = LoggerFactory.getLogger(ConversionUtils.class);
 
-	private ConversionUtils() {}
+	private ConversionUtils() {
+	}
 
 	public static List<OaBrokerInstance> oafInstanceToBrokerInstances(final Instance i) {
-		if (i == null) { return new ArrayList<>(); }
+		if (i == null) {
+			return new ArrayList<>();
+		}
 
 		return mappedList(i.getUrl(), url -> {
 			final OaBrokerInstance res = new OaBrokerInstance();
@@ -72,7 +75,9 @@ public class ConversionUtils {
 	}
 
 	public static OaBrokerRelatedDataset oafDatasetToBrokerDataset(final Dataset d) {
-		if (d == null) { return null; }
+		if (d == null) {
+			return null;
+		}
 
 		final OaBrokerRelatedDataset res = new OaBrokerRelatedDataset();
 		res.setOpenaireId(cleanOpenaireId(d.getId()));
@@ -85,7 +90,9 @@ public class ConversionUtils {
 	}
 
 	public static OaBrokerRelatedPublication oafPublicationToBrokerPublication(final Publication p) {
-		if (p == null) { return null; }
+		if (p == null) {
+			return null;
+		}
 
 		final OaBrokerRelatedPublication res = new OaBrokerRelatedPublication();
 		res.setOpenaireId(cleanOpenaireId(p.getId()));
@@ -99,7 +106,9 @@ public class ConversionUtils {
 	}
 
 	public static OaBrokerMainEntity oafResultToBrokerResult(final Result result) {
-		if (result == null) { return null; }
+		if (result == null) {
+			return null;
+		}
 
 		final OaBrokerMainEntity res = new OaBrokerMainEntity();
 
@@ -116,7 +125,8 @@ public class ConversionUtils {
 		res.setEmbargoenddate(fieldValue(result.getEmbargoenddate()));
 		res.setContributor(fieldList(result.getContributor()));
 		res
-			.setJournal(result instanceof Publication ? oafJournalToBrokerJournal(((Publication) result).getJournal()) : null);
+			.setJournal(
+				result instanceof Publication ? oafJournalToBrokerJournal(((Publication) result).getJournal()) : null);
 		res.setPids(allResultPids(result));
 		res.setInstances(flatMappedList(result.getInstance(), ConversionUtils::oafInstanceToBrokerInstances));
 		res
@@ -141,7 +151,9 @@ public class ConversionUtils {
 	}
 
 	private static OaBrokerAuthor oafAuthorToBrokerAuthor(final Author author) {
-		if (author == null) { return null; }
+		if (author == null) {
+			return null;
+		}
 
 		final String pids = author.getPid() != null ? author
 			.getPid()
@@ -165,7 +177,9 @@ public class ConversionUtils {
 	}
 
 	private static OaBrokerJournal oafJournalToBrokerJournal(final Journal journal) {
-		if (journal == null) { return null; }
+		if (journal == null) {
+			return null;
+		}
 
 		final OaBrokerJournal res = new OaBrokerJournal();
 		res.setName(journal.getName());
@@ -177,7 +191,9 @@ public class ConversionUtils {
 	}
 
 	private static OaBrokerExternalReference oafExtRefToBrokerExtRef(final ExternalReference ref) {
-		if (ref == null) { return null; }
+		if (ref == null) {
+			return null;
+		}
 
 		final OaBrokerExternalReference res = new OaBrokerExternalReference();
 		res.setRefidentifier(ref.getRefidentifier());
@@ -188,7 +204,9 @@ public class ConversionUtils {
 	}
 
 	public static OaBrokerProject oafProjectToBrokerProject(final Project p) {
-		if (p == null) { return null; }
+		if (p == null) {
+			return null;
+		}
 
 		final OaBrokerProject res = new OaBrokerProject();
 		res.setOpenaireId(cleanOpenaireId(p.getId()));
@@ -212,7 +230,9 @@ public class ConversionUtils {
 	}
 
 	public static OaBrokerRelatedSoftware oafSoftwareToBrokerSoftware(final Software sw) {
-		if (sw == null) { return null; }
+		if (sw == null) {
+			return null;
+		}
 
 		final OaBrokerRelatedSoftware res = new OaBrokerRelatedSoftware();
 		res.setOpenaireId(cleanOpenaireId(sw.getId()));
@@ -225,7 +245,9 @@ public class ConversionUtils {
 	}
 
 	public static OaBrokerRelatedDatasource oafDatasourceToBrokerDatasource(final Datasource ds) {
-		if (ds == null) { return null; }
+		if (ds == null) {
+			return null;
+		}
 
 		final OaBrokerRelatedDatasource res = new OaBrokerRelatedDatasource();
 		res.setName(StringUtils.defaultIfBlank(fieldValue(ds.getOfficialname()), fieldValue(ds.getEnglishname())));
@@ -285,7 +307,9 @@ public class ConversionUtils {
 	}
 
 	private static List<OaBrokerTypedValue> structPropTypedList(final List<StructuredProperty> list) {
-		if (list == null) { return new ArrayList<>(); }
+		if (list == null) {
+			return new ArrayList<>();
+		}
 
 		return list
 			.stream()
@@ -295,7 +319,9 @@ public class ConversionUtils {
 	}
 
 	private static <F, T> List<T> mappedList(final Collection<F> list, final Function<F, T> func) {
-		if (list == null) { return new ArrayList<>(); }
+		if (list == null) {
+			return new ArrayList<>();
+		}
 
 		return list
 			.stream()
@@ -306,7 +332,9 @@ public class ConversionUtils {
 	}
 
 	private static <F, T> List<T> flatMappedList(final List<F> list, final Function<F, List<T>> func) {
-		if (list == null) { return new ArrayList<>(); }
+		if (list == null) {
+			return new ArrayList<>();
+		}
 
 		return list
 			.stream()
@@ -318,7 +346,9 @@ public class ConversionUtils {
 	}
 
 	private static <F, T> T mappedFirst(final List<F> list, final Function<F, T> func) {
-		if (list == null) { return null; }
+		if (list == null) {
+			return null;
+		}
 
 		return list
 			.stream()

dhp-workflows/dhp-broker-events/src/test/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtilsTest.java

@@ -1,3 +1,4 @@
+
 package eu.dnetlib.dhp.broker.oa.util;
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
@@ -17,7 +18,8 @@ import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
 class ConversionUtilsTest {
 
 	@BeforeEach
-	void setUp() throws Exception {}
+	void setUp() throws Exception {
+	}
 
 	@Test
 	void testAllResultPids() {

dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/orcid/MappingORCIDToOAFTest.scala

@@ -25,9 +25,11 @@ class MappingORCIDToOAFTest {
       .mkString
     assertNotNull(json)
     assertFalse(json.isEmpty)
-    json.linesWithSeparators.map(l => l.stripLineEnd).foreach(s => {
+    json.linesWithSeparators
-      assertNotNull(ORCIDToOAF.extractValueFromInputString(s))
+      .map(l => l.stripLineEnd)
-    })
+      .foreach(s => {
+        assertNotNull(ORCIDToOAF.extractValueFromInputString(s))
+      })
   }
 
   @Test

dhp-workflows/dhp-graph-mapper/src/test/scala/eu/dnetlib/dhp/oa/graph/resolution/ResolveEntitiesTest.scala

@@ -53,7 +53,8 @@ class ResolveEntitiesTest extends Serializable {
   def generateUpdates(spark: SparkSession): Unit = {
     val template = Source.fromInputStream(this.getClass.getResourceAsStream("updates")).mkString
 
-    val pids: List[String] = template.linesWithSeparators.map(l => l.stripLineEnd)
+    val pids: List[String] = template.linesWithSeparators
+      .map(l => l.stripLineEnd)
       .map { id =>
         val r = new Result
         r.setId(id.toLowerCase.trim)
@@ -264,7 +265,8 @@ class ResolveEntitiesTest extends Serializable {
       Source
         .fromInputStream(this.getClass.getResourceAsStream(s"publication"))
         .mkString
-        .linesWithSeparators.map(l => l.stripLineEnd)
+        .linesWithSeparators
+        .map(l => l.stripLineEnd)
         .next(),
       classOf[Publication]
     )

dhp-workflows/dhp-graph-mapper/src/test/scala/eu/dnetlib/dhp/sx/graph/scholix/ScholixGraphTest.scala

@@ -69,7 +69,8 @@ class ScholixGraphTest extends AbstractVocabularyTest {
         getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/merge_result_scholix")
       )
       .mkString
-    val result: List[(Relation, ScholixSummary)] = inputRelations.linesWithSeparators.map(l => l.stripLineEnd)
+    val result: List[(Relation, ScholixSummary)] = inputRelations.linesWithSeparators
+      .map(l => l.stripLineEnd)
       .sliding(2)
       .map(s => (s.head, s(1)))
       .map(p => (mapper.readValue(p._1, classOf[Relation]), mapper.readValue(p._2, classOf[ScholixSummary])))