enrico.ottonello
/
dnet-hadoop
forked from D-Net/dnet-hadoop
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

added the implements Serializable to each class

This commit is contained in:
Miriam Baglioni 2020-04-23 11:48:47 +02:00
parent 24fa81d7e8
commit e431fe4f5b
14 changed files with 173 additions and 175 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

47
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/community/CommunityConfigurationFactory.java
View File

@ -4,11 +4,14 @@ import com.google.common.collect.Lists;
import com.google.common.collect.Maps; import com.google.common.collect.Maps;
import com.google.gson.Gson; import com.google.gson.Gson;
import com.google.gson.GsonBuilder; import com.google.gson.GsonBuilder;
import eu.dnetlib.dhp.selectioncriteria.InterfaceAdapter; import eu.dnetlib.dhp.selectioncriteria.InterfaceAdapter;
import eu.dnetlib.dhp.selectioncriteria.Selection; import eu.dnetlib.dhp.selectioncriteria.Selection;
import eu.dnetlib.dhp.selectioncriteria.VerbResolver; import eu.dnetlib.dhp.selectioncriteria.VerbResolver;
import eu.dnetlib.dhp.selectioncriteria.VerbResolverFactory; import eu.dnetlib.dhp.selectioncriteria.VerbResolverFactory;
import java.io.StringReader;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log; import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory; import org.apache.commons.logging.LogFactory;
@ -17,15 +20,7 @@ import org.dom4j.DocumentException;
import org.dom4j.Node; import org.dom4j.Node;
import org.dom4j.io.SAXReader; import org.dom4j.io.SAXReader;
/** Created by miriam on 03/08/2018. */
import java.io.StringReader;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
/**
* Created by miriam on 03/08/2018.
*/
public class CommunityConfigurationFactory { public class CommunityConfigurationFactory {
private static final Log log = LogFactory.getLog(CommunityConfigurationFactory.class); private static final Log log = LogFactory.getLog(CommunityConfigurationFactory.class);
@ -38,9 +33,9 @@ public class CommunityConfigurationFactory {
final Document doc = new SAXReader().read(new StringReader(xml)); final Document doc = new SAXReader().read(new StringReader(xml));
final Map<String,Community> communities = Maps.newHashMap(); final Map<String, Community> communities = Maps.newHashMap();
for(final Object o : doc.selectNodes("//community")) { for (final Object o : doc.selectNodes("//community")) {
final Node node = (Node) o; final Node node = (Node) o;
@ -54,8 +49,7 @@ public class CommunityConfigurationFactory {
log.info(String.format("loaded %s community configuration profiles", communities.size())); log.info(String.format("loaded %s community configuration profiles", communities.size()));
log.debug(String.format("loaded community configuration:\n%s", communities.toString())); log.debug(String.format("loaded community configuration:\n%s", communities.toString()));
return new CommunityConfiguration(communities);
return new CommunityConfiguration(communities);
} }
public static CommunityConfiguration fromJson(final String json) { public static CommunityConfiguration fromJson(final String json) {
@ -88,9 +82,9 @@ public class CommunityConfigurationFactory {
final List<String> subjects = Lists.newArrayList(); final List<String> subjects = Lists.newArrayList();
final List <Node> list = node.selectNodes("./subjects/subject"); final List<Node> list = node.selectNodes("./subjects/subject");
for(Node n : list){ for (Node n : list) {
log.debug("text of the node " + n.getText()); log.debug("text of the node " + n.getText());
subjects.add(StringUtils.trim(n.getText())); subjects.add(StringUtils.trim(n.getText()));
} }
@ -98,11 +92,10 @@ public class CommunityConfigurationFactory {
return subjects; return subjects;
} }
private static List<Datasource> parseDatasources(final Node node) { private static List<Datasource> parseDatasources(final Node node) {
final List <Node> list = node.selectNodes("./datasources/datasource"); final List<Node> list = node.selectNodes("./datasources/datasource");
final List<Datasource> datasourceList = new ArrayList<>(); final List<Datasource> datasourceList = new ArrayList<>();
for(Node n : list){ for (Node n : list) {
Datasource d = new Datasource(); Datasource d = new Datasource();
d.setOpenaireId(n.selectSingleNode("./openaireId").getText()); d.setOpenaireId(n.selectSingleNode("./openaireId").getText());
d.setSelCriteria(n.selectSingleNode("./selcriteria"), resolver); d.setSelCriteria(n.selectSingleNode("./selcriteria"), resolver);
@ -115,23 +108,21 @@ public class CommunityConfigurationFactory {
private static List<ZenodoCommunity> parseZenodoCommunities(final Node node) { private static List<ZenodoCommunity> parseZenodoCommunities(final Node node) {
final Node oacommunitynode = node.selectSingleNode("./oacommunity"); final Node oacommunitynode = node.selectSingleNode("./oacommunity");
String oacommunity = null; String oacommunity = null;
if (oacommunitynode != null){ if (oacommunitynode != null) {
String tmp = oacommunitynode.getText(); String tmp = oacommunitynode.getText();
if(StringUtils.isNotBlank(tmp)) if (StringUtils.isNotBlank(tmp)) oacommunity = tmp;
oacommunity = tmp;
} }
final List<Node> list = node.selectNodes("./zenodocommunities/zenodocommunity"); final List<Node> list = node.selectNodes("./zenodocommunities/zenodocommunity");
final List<ZenodoCommunity> zenodoCommunityList = new ArrayList<>(); final List<ZenodoCommunity> zenodoCommunityList = new ArrayList<>();
for(Node n : list){ for (Node n : list) {
ZenodoCommunity zc = new ZenodoCommunity(); ZenodoCommunity zc = new ZenodoCommunity();
zc.setZenodoCommunityId(n.selectSingleNode("./zenodoid").getText()); zc.setZenodoCommunityId(n.selectSingleNode("./zenodoid").getText());
zc.setSelCriteria(n.selectSingleNode("./selcriteria")); zc.setSelCriteria(n.selectSingleNode("./selcriteria"));
zenodoCommunityList.add(zc); zenodoCommunityList.add(zc);
} }
if(oacommunity != null){ if (oacommunity != null) {
ZenodoCommunity zc = new ZenodoCommunity(); ZenodoCommunity zc = new ZenodoCommunity();
zc.setZenodoCommunityId(oacommunity); zc.setZenodoCommunityId(oacommunity);
zenodoCommunityList.add(zc); zenodoCommunityList.add(zc);
@ -139,8 +130,4 @@ public class CommunityConfigurationFactory {
log.info("size of the zenodo community list " + zenodoCommunityList.size()); log.info("size of the zenodo community list " + zenodoCommunityList.size());
return zenodoCommunityList; return zenodoCommunityList;
} }
}
}

25
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/community/Constraint.java
View File

@ -1,22 +1,17 @@
package eu.dnetlib.dhp.community; package eu.dnetlib.dhp.community;
import eu.dnetlib.dhp.selectioncriteria.Selection; import eu.dnetlib.dhp.selectioncriteria.Selection;
import eu.dnetlib.dhp.selectioncriteria.VerbResolver; import eu.dnetlib.dhp.selectioncriteria.VerbResolver;
import java.io.Serializable; import java.io.Serializable;
import java.lang.reflect.InvocationTargetException; import java.lang.reflect.InvocationTargetException;
public class Constraint implements Serializable { public class Constraint implements Serializable {
private String verb; private String verb;
private String field; private String field;
private String value; private String value;
private Selection selection; private Selection selection;
public Constraint() { public Constraint() {}
}
public String getVerb() { public String getVerb() {
return verb; return verb;
@ -42,21 +37,17 @@ public class Constraint implements Serializable {
this.value = value; this.value = value;
} }
public void setSelection(Selection sel) {
public void setSelection(Selection sel){
selection = sel; selection = sel;
} }
public void setSelection(VerbResolver resolver) throws InvocationTargetException, NoSuchMethodException, InstantiationException, IllegalAccessException { public void setSelection(VerbResolver resolver)
selection = resolver.getSelectionCriteria(verb,value); throws InvocationTargetException, NoSuchMethodException, InstantiationException,
IllegalAccessException {
selection = resolver.getSelectionCriteria(verb, value);
} }
public boolean verifyCriteria(String metadata) {
public boolean verifyCriteria(String metadata){
return selection.apply(metadata); return selection.apply(metadata);
} }
}
}

40
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/community/Constraints.java
View File

@ -1,32 +1,25 @@
package eu.dnetlib.dhp.community; package eu.dnetlib.dhp.community;
import com.google.gson.Gson; import com.google.gson.Gson;
import com.google.gson.reflect.TypeToken; import com.google.gson.reflect.TypeToken;
import eu.dnetlib.dhp.selectioncriteria.VerbResolver; import eu.dnetlib.dhp.selectioncriteria.VerbResolver;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import java.io.Serializable; import java.io.Serializable;
import java.lang.reflect.InvocationTargetException; import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Type; import java.lang.reflect.Type;
import java.util.Collection; import java.util.Collection;
import java.util.List; import java.util.List;
import java.util.Map; import java.util.Map;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
/** /** Created by miriam on 02/08/2018. */
* Created by miriam on 02/08/2018.
*/
public class Constraints implements Serializable { public class Constraints implements Serializable {
private static final Log log = LogFactory.getLog(Constraints.class); private static final Log log = LogFactory.getLog(Constraints.class);
//private ConstraintEncapsulator ce; // private ConstraintEncapsulator ce;
private List<Constraint> constraint; private List<Constraint> constraint;
public Constraints() {}
public Constraints() {
}
public List<Constraint> getConstraint() { public List<Constraint> getConstraint() {
return constraint; return constraint;
} }
@ -35,14 +28,13 @@ public class Constraints implements Serializable {
this.constraint = constraint; this.constraint = constraint;
} }
public void setSc(String json){ public void setSc(String json) {
Type collectionType = new TypeToken<Collection<Constraint>>(){}.getType(); Type collectionType = new TypeToken<Collection<Constraint>>() {}.getType();
constraint = new Gson().fromJson(json, collectionType); constraint = new Gson().fromJson(json, collectionType);
} }
void setSelection(VerbResolver resolver) { void setSelection(VerbResolver resolver) {
for(Constraint st: constraint){ for (Constraint st : constraint) {
try { try {
st.setSelection(resolver); st.setSelection(resolver);
@ -56,24 +48,20 @@ public class Constraints implements Serializable {
log.error(e.getMessage()); log.error(e.getMessage());
} }
} }
} }
// Constraint in and
//Constraint in and
public boolean verifyCriteria(final Map<String, List<String>> param) { public boolean verifyCriteria(final Map<String, List<String>> param) {
for(Constraint sc : constraint) { for (Constraint sc : constraint) {
boolean verified = false; boolean verified = false;
for(String value : param.get(sc.getField())){ for (String value : param.get(sc.getField())) {
if (sc.verifyCriteria(value.trim())){ if (sc.verifyCriteria(value.trim())) {
verified = true; verified = true;
} }
} }
if(!verified) if (!verified) return verified;
return verified;
} }
return true; return true;
} }
}
}

92
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/community/QueryInformationSystem.java
View File

@ -4,63 +4,59 @@ import com.google.common.base.Joiner;
import eu.dnetlib.dhp.utils.ISLookupClientFactory; import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import java.util.List;
import org.dom4j.DocumentException; import org.dom4j.DocumentException;
import java.util.List;
public class QueryInformationSystem { public class QueryInformationSystem {
private static final String XQUERY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') " + private static final String XQUERY =
" let $subj := $x//CONFIGURATION/context/param[./@name='subject']/text() " + "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
" let $datasources := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::contentproviders')]/concept " + + " let $subj := $x//CONFIGURATION/context/param[./@name='subject']/text() "
" let $organizations := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::resultorganizations')]/concept " + + " let $datasources := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::contentproviders')]/concept "
" let $communities := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::zenodocommunities')]/concept " + + " let $organizations := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::resultorganizations')]/concept "
" where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " + + " let $communities := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::zenodocommunities')]/concept "
" return " + + " where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] "
" <community> " + + " return "
" { $x//CONFIGURATION/context/@id} " + + " <community> "
" <subjects> " + + " { $x//CONFIGURATION/context/@id} "
" {for $y in tokenize($subj,',') " + + " <subjects> "
" return " + + " {for $y in tokenize($subj,',') "
" <subject>{$y}</subject>} " + + " return "
" </subjects> " + + " <subject>{$y}</subject>} "
" <datasources> " + + " </subjects> "
" {for $d in $datasources " + + " <datasources> "
" where $d/param[./@name='enabled']/text()='true' " + + " {for $d in $datasources "
" return " + + " where $d/param[./@name='enabled']/text()='true' "
" <datasource> " + + " return "
" <openaireId> " + + " <datasource> "
" {$d//param[./@name='openaireId']/text()} " + + " <openaireId> "
" </openaireId> " + + " {$d//param[./@name='openaireId']/text()} "
" <selcriteria> " + + " </openaireId> "
" {$d/param[./@name='selcriteria']/text()} " + + " <selcriteria> "
" </selcriteria> " + + " {$d/param[./@name='selcriteria']/text()} "
" </datasource> } " + + " </selcriteria> "
" </datasources> " + + " </datasource> } "
" <zenodocommunities> " + + " </datasources> "
" {for $zc in $communities " + + " <zenodocommunities> "
" return " + + " {for $zc in $communities "
" <zenodocommunity> " + + " return "
" <zenodoid> " + + " <zenodocommunity> "
" {$zc/param[./@name='zenodoid']/text()} " + + " <zenodoid> "
" </zenodoid> " + + " {$zc/param[./@name='zenodoid']/text()} "
" <selcriteria> " + + " </zenodoid> "
" {$zc/param[./@name='selcriteria']/text()} " + + " <selcriteria> "
" </selcriteria> " + + " {$zc/param[./@name='selcriteria']/text()} "
" </zenodocommunity>} " + + " </selcriteria> "
" </zenodocommunities> " + + " </zenodocommunity>} "
" </community>"; + " </zenodocommunities> "
+ " </community>";
public static CommunityConfiguration getCommunityConfiguration(final String isLookupUrl) throws ISLookUpException, DocumentException { public static CommunityConfiguration getCommunityConfiguration(final String isLookupUrl)
throws ISLookUpException, DocumentException {
ISLookUpService isLookUp = ISLookupClientFactory.getLookUpService(isLookupUrl); ISLookUpService isLookUp = ISLookupClientFactory.getLookUpService(isLookupUrl);
final List<String> res = isLookUp.quickSearchProfile(XQUERY); final List<String> res = isLookUp.quickSearchProfile(XQUERY);
final String xmlConf = "<communities>" + Joiner.on(" ").join(res) + "</communities>"; final String xmlConf = "<communities>" + Joiner.on(" ").join(res) + "</communities>";
return CommunityConfigurationFactory.newInstance(xmlConf); return CommunityConfigurationFactory.newInstance(xmlConf);
} }
} }

15
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/community/ResultTagger.java
View File

@ -56,7 +56,8 @@ public class ResultTagger implements Serializable {
// Verify if the entity is deletedbyinference. In case verify if to clean the context list // Verify if the entity is deletedbyinference. In case verify if to clean the context list
// from all the zenodo communities // from all the zenodo communities
if (result.getDataInfo().getDeletedbyinference()) { if (result.getDataInfo().getDeletedbyinference()) {
if (clearContext(result)) return result; clearContext(result);
return result;
} }
// communities contains all the communities to be added as context for the result // communities contains all the communities to be added as context for the result
@ -118,7 +119,15 @@ public class ResultTagger implements Serializable {
.map( .map(
c -> { c -> {
if (communities.contains(c.getId())) { if (communities.contains(c.getId())) {
List<DataInfo> dataInfoList = c.getDataInfo(); Optional<List<DataInfo>> opt_dataInfoList =
Optional.ofNullable(c.getDataInfo());
List<DataInfo> dataInfoList;
if (opt_dataInfoList.isPresent())
dataInfoList = opt_dataInfoList.get();
else {
dataInfoList = new ArrayList<>();
c.setDataInfo(dataInfoList);
}
if (subjects.contains(c.getId())) if (subjects.contains(c.getId()))
dataInfoList.add( dataInfoList.add(
getDataInfo( getDataInfo(
@ -153,7 +162,7 @@ public class ResultTagger implements Serializable {
c -> { c -> {
Context context = new Context(); Context context = new Context();
context.setId(c); context.setId(c);
List<DataInfo> dataInfoList = Arrays.asList(); List<DataInfo> dataInfoList = new ArrayList<>();
if (subjects.contains(c)) if (subjects.contains(c))
dataInfoList.add( dataInfoList.add(
getDataInfo( getDataInfo(

23
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/community/SelectionConstraints.java
View File

@ -3,8 +3,6 @@ package eu.dnetlib.dhp.community;
import com.google.gson.Gson; import com.google.gson.Gson;
import com.google.gson.reflect.TypeToken; import com.google.gson.reflect.TypeToken;
import eu.dnetlib.dhp.selectioncriteria.VerbResolver; import eu.dnetlib.dhp.selectioncriteria.VerbResolver;
import java.io.Serializable; import java.io.Serializable;
import java.lang.reflect.Type; import java.lang.reflect.Type;
import java.util.Collection; import java.util.Collection;
@ -14,9 +12,7 @@ import java.util.Map;
public class SelectionConstraints implements Serializable { public class SelectionConstraints implements Serializable {
private List<Constraints> criteria; private List<Constraints> criteria;
public SelectionConstraints() { public SelectionConstraints() {}
}
public List<Constraints> getCriteria() { public List<Constraints> getCriteria() {
return criteria; return criteria;
@ -26,24 +22,25 @@ public class SelectionConstraints implements Serializable {
this.criteria = criteria; this.criteria = criteria;
} }
public void setSc(String json){ public void setSc(String json) {
Type collectionType = new TypeToken<Collection<Constraints>>(){}.getType(); Type collectionType = new TypeToken<Collection<Constraints>>() {}.getType();
criteria = new Gson().fromJson(json, collectionType); criteria = new Gson().fromJson(json, collectionType);
} }
//Constraints in or // Constraints in or
public boolean verifyCriteria(final Map<String, List<String>> param){ public boolean verifyCriteria(final Map<String, List<String>> param) {
for(Constraints selc : criteria) { for (Constraints selc : criteria) {
if(selc.verifyCriteria(param)){ if (selc.verifyCriteria(param)) {
return true; return true;
} }
} }
return false; return false;
} }
public void setSelection(VerbResolver resolver) { public void setSelection(VerbResolver resolver) {
for(Constraints cs : criteria){ for (Constraints cs : criteria) {
cs.setSelection(resolver); cs.setSelection(resolver);
} }
} }
} }

9
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/ContainsVerb.java
View File

@ -1,12 +1,13 @@
package eu.dnetlib.dhp.selectioncriteria; package eu.dnetlib.dhp.selectioncriteria;
import java.io.Serializable;
@VerbClass("contains") @VerbClass("contains")
public class ContainsVerb implements Selection { public class ContainsVerb implements Selection, Serializable {
private String param; private String param;
public ContainsVerb() { public ContainsVerb() {}
}
public ContainsVerb(final String param) { public ContainsVerb(final String param) {
this.param = param; this.param = param;
@ -24,4 +25,4 @@ public class ContainsVerb implements Selection {
public void setParam(String param) { public void setParam(String param) {
this.param = param; this.param = param;
} }
} }

9
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/EqualVerb.java
View File

@ -1,19 +1,18 @@
package eu.dnetlib.dhp.selectioncriteria; package eu.dnetlib.dhp.selectioncriteria;
import java.io.Serializable;
@VerbClass("equals") @VerbClass("equals")
public class EqualVerb implements Selection { public class EqualVerb implements Selection, Serializable {
private String param; private String param;
public EqualVerb() { public EqualVerb() {}
}
public EqualVerb(final String param) { public EqualVerb(final String param) {
this.param = param; this.param = param;
} }
@Override @Override
public boolean apply(String value) { public boolean apply(String value) {
return value.equalsIgnoreCase(param); return value.equalsIgnoreCase(param);
@ -26,4 +25,4 @@ public class EqualVerb implements Selection {
public void setParam(String param) { public void setParam(String param) {
this.param = param; this.param = param;
} }
} }

17
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/InterfaceAdapter.java
View File

@ -1,7 +1,6 @@
package eu.dnetlib.dhp.selectioncriteria; package eu.dnetlib.dhp.selectioncriteria;
import com.google.gson.*; import com.google.gson.*;
import java.lang.reflect.Type; import java.lang.reflect.Type;
public class InterfaceAdapter implements JsonSerializer, JsonDeserializer { public class InterfaceAdapter implements JsonSerializer, JsonDeserializer {
@ -9,8 +8,11 @@ public class InterfaceAdapter implements JsonSerializer, JsonDeserializer {
private static final String CLASSNAME = "CLASSNAME"; private static final String CLASSNAME = "CLASSNAME";
private static final String DATA = "DATA"; private static final String DATA = "DATA";
public Object deserialize(JsonElement jsonElement, Type type, public Object deserialize(
JsonDeserializationContext jsonDeserializationContext) throws JsonParseException { JsonElement jsonElement,
Type type,
JsonDeserializationContext jsonDeserializationContext)
throws JsonParseException {
JsonObject jsonObject = jsonElement.getAsJsonObject(); JsonObject jsonObject = jsonElement.getAsJsonObject();
JsonPrimitive prim = (JsonPrimitive) jsonObject.get(CLASSNAME); JsonPrimitive prim = (JsonPrimitive) jsonObject.get(CLASSNAME);
@ -18,20 +20,21 @@ public class InterfaceAdapter implements JsonSerializer, JsonDeserializer {
Class klass = getObjectClass(className); Class klass = getObjectClass(className);
return jsonDeserializationContext.deserialize(jsonObject.get(DATA), klass); return jsonDeserializationContext.deserialize(jsonObject.get(DATA), klass);
} }
public JsonElement serialize(Object jsonElement, Type type, JsonSerializationContext jsonSerializationContext) {
public JsonElement serialize(
Object jsonElement, Type type, JsonSerializationContext jsonSerializationContext) {
JsonObject jsonObject = new JsonObject(); JsonObject jsonObject = new JsonObject();
jsonObject.addProperty(CLASSNAME, jsonElement.getClass().getName()); jsonObject.addProperty(CLASSNAME, jsonElement.getClass().getName());
jsonObject.add(DATA, jsonSerializationContext.serialize(jsonElement)); jsonObject.add(DATA, jsonSerializationContext.serialize(jsonElement));
return jsonObject; return jsonObject;
} }
/****** Helper method to get the className of the object to be deserialized *****/ /** **** Helper method to get the className of the object to be deserialized **** */
public Class getObjectClass(String className) { public Class getObjectClass(String className) {
try { try {
return Class.forName(className); return Class.forName(className);
} catch (ClassNotFoundException e) { } catch (ClassNotFoundException e) {
//e.printStackTrace(); // e.printStackTrace();
throw new JsonParseException(e.getMessage()); throw new JsonParseException(e.getMessage());
} }
} }
} }

9
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/NotContainsVerb.java
View File

@ -1,12 +1,13 @@
package eu.dnetlib.dhp.selectioncriteria; package eu.dnetlib.dhp.selectioncriteria;
import java.io.Serializable;
@VerbClass("not_contains") @VerbClass("not_contains")
public class NotContainsVerb implements Selection { public class NotContainsVerb implements Selection, Serializable {
private String param; private String param;
public NotContainsVerb() { public NotContainsVerb() {}
}
public NotContainsVerb(final String param) { public NotContainsVerb(final String param) {
this.param = param; this.param = param;
@ -24,4 +25,4 @@ public class NotContainsVerb implements Selection {
public void setParam(String param) { public void setParam(String param) {
this.param = param; this.param = param;
} }
} }

9
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/NotEqualVerb.java
View File

@ -1,18 +1,17 @@
package eu.dnetlib.dhp.selectioncriteria; package eu.dnetlib.dhp.selectioncriteria;
import java.io.Serializable;
@VerbClass("not_equals") @VerbClass("not_equals")
public class NotEqualVerb implements Selection { public class NotEqualVerb implements Selection, Serializable {
private String param; private String param;
public NotEqualVerb(final String param) { public NotEqualVerb(final String param) {
this.param = param; this.param = param;
} }
public NotEqualVerb() { public NotEqualVerb() {}
}
public String getParam() { public String getParam() {
return param; return param;
@ -26,4 +25,4 @@ public class NotEqualVerb implements Selection {
public boolean apply(String value) { public boolean apply(String value) {
return !value.equalsIgnoreCase(param); return !value.equalsIgnoreCase(param);
} }
} }

2
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/Selection.java
View File

@ -3,4 +3,4 @@ package eu.dnetlib.dhp.selectioncriteria;
public interface Selection { public interface Selection {
boolean apply(String value); boolean apply(String value);
} }

46
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/VerbResolver.java
View File

@ -1,29 +1,57 @@
package eu.dnetlib.dhp.selectioncriteria; package eu.dnetlib.dhp.selectioncriteria;
import io.github.classgraph.ClassGraph;
import io.github.classgraph.ClassInfo;
import io.github.classgraph.ClassInfoList;
import io.github.classgraph.ScanResult;
import java.io.Serializable; import java.io.Serializable;
import java.lang.reflect.InvocationTargetException; import java.lang.reflect.InvocationTargetException;
import java.util.Map; import java.util.Map;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import org.reflections.Reflections;
public class VerbResolver implements Serializable { public class VerbResolver implements Serializable {
private final Map<String, Class<Selection>> map; private Map<String, Class<Selection>> map = null; // = new HashMap<>();
private final ClassGraph classgraph = new ClassGraph();
public VerbResolver() { public VerbResolver() {
this.map = try (ScanResult scanResult = // Assign scanResult in try-with-resources
new Reflections("eu.dnetlib") classgraph // Create a new ClassGraph instance
.getTypesAnnotatedWith(VerbClass.class).stream() .verbose() // If you want to enable logging to stderr
.collect( .enableAllInfo() // Scan classes, methods, fields, annotations
Collectors.toMap( .whitelistPackages(
v -> v.getAnnotation(VerbClass.class).value(), "eu.dnetlib.dhp.selectioncriteria") // Scan com.xyz and subpackages
v -> (Class<Selection>) v)); .scan()) { // Perform the scan and return a ScanResult
ClassInfoList routeClassInfoList =
scanResult.getClassesWithAnnotation(
"eu.dnetlib.dhp.selectioncriteria.VerbClass");
this.map =
routeClassInfoList.stream()
.collect(
Collectors.toMap(
value ->
(String)
((ClassInfo) value)
.getAnnotationInfo()
.get(0)
.getParameterValues()
.get(0)
.getValue(),
value ->
(Class<Selection>)
((ClassInfo) value).loadClass()));
} catch (Exception e) {
e.printStackTrace();
}
} }
public Selection getSelectionCriteria(String name, String param) public Selection getSelectionCriteria(String name, String param)
throws NoSuchMethodException, IllegalAccessException, InvocationTargetException, throws NoSuchMethodException, IllegalAccessException, InvocationTargetException,
InstantiationException { InstantiationException {
// return Class.forName(tmp_map.get(name)).
return map.get(name).getDeclaredConstructor((String.class)).newInstance(param); return map.get(name).getDeclaredConstructor((String.class)).newInstance(param);
} }
} }

5
dhp-workflows/dhp-bulktag/src/main/java/eu/dnetlib/dhp/selectioncriteria/VerbResolverFactory.java
View File

@ -2,9 +2,8 @@ package eu.dnetlib.dhp.selectioncriteria;
public class VerbResolverFactory { public class VerbResolverFactory {
public static VerbResolver newInstance(){ public static VerbResolver newInstance() {
return new VerbResolver(); return new VerbResolver();
} }
}
}