forked from D-Net/dnet-hadoop
better logging, WIP: collectorWorker error reporting
This commit is contained in:
parent
2ee0c3e47e
commit
a8a758925e
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@ -2,18 +2,43 @@
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package eu.dnetlib.dhp.application;
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import java.io.*;
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import java.util.Map;
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import java.util.Properties;
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import org.apache.hadoop.conf.Configuration;
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import com.google.common.collect.Maps;
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public class ApplicationUtils {
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public static void populateOOZIEEnv(final String paramName, String value) throws IOException {
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public static Configuration getHadoopConfiguration(String nameNode) {
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// ====== Init HDFS File System Object
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Configuration conf = new Configuration();
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// Set FileSystem URI
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conf.set("fs.defaultFS", nameNode);
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// Because of Maven
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conf.set("fs.hdfs.impl", org.apache.hadoop.hdfs.DistributedFileSystem.class.getName());
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conf.set("fs.file.impl", org.apache.hadoop.fs.LocalFileSystem.class.getName());
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System.setProperty("hadoop.home.dir", "/");
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return conf;
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}
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public static void populateOOZIEEnv(final Map<String, String> report) throws IOException {
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File file = new File(System.getProperty("oozie.action.output.properties"));
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Properties props = new Properties();
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report.forEach((k, v) -> props.setProperty(k, v));
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props.setProperty(paramName, value);
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OutputStream os = new FileOutputStream(file);
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try(OutputStream os = new FileOutputStream(file)) {
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props.store(os, "");
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os.close();
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}
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}
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public static void populateOOZIEEnv(final String paramName, String value) throws IOException {
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Map<String, String> report = Maps.newHashMap();
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report.put(paramName, value);
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populateOOZIEEnv(report);
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}
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}
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@ -4,6 +4,7 @@ package eu.dnetlib.dhp.aggregation.common;
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public class AggregationConstants {
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public static final String SEQUENCE_FILE_NAME = "/sequence_file";
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public static final String REPORT_FILE_NAME = "/report";
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public static final String MDSTORE_DATA_PATH = "/store";
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public static final String MDSTORE_SIZE_PATH = "/size";
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@ -2,9 +2,14 @@
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package eu.dnetlib.dhp.aggregation.common;
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import java.io.BufferedOutputStream;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.io.InputStream;
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import java.nio.charset.StandardCharsets;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.FSDataInputStream;
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import org.apache.hadoop.fs.FSDataOutputStream;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.hadoop.fs.Path;
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@ -25,16 +30,31 @@ public class AggregationUtility {
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public static final ObjectMapper MAPPER = new ObjectMapper();
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public static void writeTotalSizeOnHDFS(final SparkSession spark, final Long total, final String path)
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public static void writeHdfsFile(final Configuration conf, final String content, final String path)
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throws IOException {
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log.info("writing size ({}) info file {}", total, path);
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try (FileSystem fs = FileSystem.get(spark.sparkContext().hadoopConfiguration());
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log.info("writing file {}, size {}", path, content.length());
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try (FileSystem fs = FileSystem.get(conf);
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BufferedOutputStream os = new BufferedOutputStream(fs.create(new Path(path)))) {
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os.write(total.toString().getBytes(StandardCharsets.UTF_8));
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os.write(content.getBytes(StandardCharsets.UTF_8));
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os.flush();
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}
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}
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public static String readHdfsFile(Configuration conf, String path) throws IOException {
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log.info("reading file {}", path);
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try (FileSystem fs = FileSystem.get(conf)) {
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final Path p = new Path(path);
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if (!fs.exists(p)) {
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throw new FileNotFoundException(path);
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}
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return IOUtils.toString(fs.open(p));
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}
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}
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public static <T> T readHdfsFileAs(Configuration conf, String path, Class<T> clazz) throws IOException {
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return MAPPER.readValue(readHdfsFile(conf, path), clazz);
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}
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public static <T> void saveDataset(final Dataset<T> mdstore, final String targetPath) {
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@ -28,8 +28,6 @@ import org.dom4j.io.SAXReader;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.data.mdstore.manager.common.model.MDStoreVersion;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.model.mdstore.MetadataRecord;
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@ -47,7 +45,7 @@ public class GenerateNativeStoreSparkJob {
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.toString(
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GenerateNativeStoreSparkJob.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/collection/collection_input_parameters.json")));
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"/eu/dnetlib/dhp/collection/generate_native_input_parameters.json")));
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parser.parseArgument(args);
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final String provenanceArgument = parser.get("provenance");
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@ -148,7 +146,9 @@ public class GenerateNativeStoreSparkJob {
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final Long total = spark.read().load(targetPath).count();
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log.info("collected {} records for datasource '{}'", total, provenance.getDatasourceName());
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writeTotalSizeOnHDFS(spark, total, currentVersion.getHdfsPath() + MDSTORE_SIZE_PATH);
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writeHdfsFile(
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spark.sparkContext().hadoopConfiguration(), total.toString(),
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currentVersion.getHdfsPath() + MDSTORE_SIZE_PATH);
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}
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public static class MDStoreAggregator extends Aggregator<MetadataRecord, MetadataRecord, MetadataRecord> {
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@ -4,12 +4,11 @@ package eu.dnetlib.dhp.collection.plugin;
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import java.util.stream.Stream;
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import eu.dnetlib.dhp.collection.worker.CollectorException;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
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import eu.dnetlib.dhp.collector.worker.model.ApiDescriptor;
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public interface CollectorPlugin {
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Stream<String> collect(ApiDescriptor api) throws CollectorException;
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Stream<String> collect(ApiDescriptor api, CollectorPluginReport report) throws CollectorException;
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CollectorPluginErrorLogList getCollectionErrors();
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}
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@ -9,15 +9,14 @@ import java.util.Spliterators;
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import java.util.stream.Stream;
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import java.util.stream.StreamSupport;
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import org.jetbrains.annotations.NotNull;
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import com.google.common.base.Splitter;
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import com.google.common.collect.Iterators;
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import com.google.common.collect.Lists;
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import eu.dnetlib.dhp.collection.plugin.CollectorPlugin;
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import eu.dnetlib.dhp.collection.worker.CollectorException;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
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import eu.dnetlib.dhp.collection.worker.utils.HttpClientParams;
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import eu.dnetlib.dhp.collector.worker.model.ApiDescriptor;
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public class OaiCollectorPlugin implements CollectorPlugin {
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@ -29,19 +28,15 @@ public class OaiCollectorPlugin implements CollectorPlugin {
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private OaiIteratorFactory oaiIteratorFactory;
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private final CollectorPluginErrorLogList errorLogList = new CollectorPluginErrorLogList();
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private HttpClientParams clientParams;
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public OaiCollectorPlugin(HttpClientParams clientParams) {
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this.clientParams = clientParams;
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}
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@Override
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public Stream<String> collect(final ApiDescriptor api) throws CollectorException {
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try {
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return doCollect(api);
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} catch (CollectorException e) {
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errorLogList.add(e.getMessage());
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throw e;
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}
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}
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private Stream<String> doCollect(ApiDescriptor api) throws CollectorException {
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public Stream<String> collect(final ApiDescriptor api, final CollectorPluginReport report)
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throws CollectorException {
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final String baseUrl = api.getBaseUrl();
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final String mdFormat = api.getParams().get(FORMAT_PARAM);
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final String setParam = api.getParams().get(OAI_SET_PARAM);
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.stream()
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.map(
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set -> getOaiIteratorFactory()
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.newIterator(baseUrl, mdFormat, set, fromDate, untilDate, errorLogList))
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.newIterator(baseUrl, mdFormat, set, fromDate, untilDate, getClientParams(), report))
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.iterator();
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return StreamSupport
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return oaiIteratorFactory;
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}
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@Override
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public CollectorPluginErrorLogList getCollectionErrors() {
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return errorLogList;
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public HttpClientParams getClientParams() {
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return clientParams;
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}
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public void setClientParams(HttpClientParams clientParams) {
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this.clientParams = clientParams;
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}
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}
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@ -17,7 +17,7 @@ import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import eu.dnetlib.dhp.collection.worker.CollectorException;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
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import eu.dnetlib.dhp.collection.worker.utils.HttpConnector2;
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import eu.dnetlib.dhp.collection.worker.utils.XmlCleaner;
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@ -25,6 +25,8 @@ public class OaiIterator implements Iterator<String> {
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private static final Logger log = LoggerFactory.getLogger(OaiIterator.class);
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private final static String REPORT_PREFIX = "oai:";
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private final Queue<String> queue = new PriorityBlockingQueue<>();
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private final SAXReader reader = new SAXReader();
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@ -36,7 +38,7 @@ public class OaiIterator implements Iterator<String> {
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private String token;
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private boolean started;
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private final HttpConnector2 httpConnector;
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private CollectorPluginErrorLogList errorLogList;
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private CollectorPluginReport errorLogList;
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public OaiIterator(
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final String baseUrl,
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final String fromDate,
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final String untilDate,
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final HttpConnector2 httpConnector,
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final CollectorPluginErrorLogList errorLogList) {
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final CollectorPluginReport errorLogList) {
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this.baseUrl = baseUrl;
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this.mdFormat = mdFormat;
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this.set = set;
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@ -111,7 +113,7 @@ public class OaiIterator implements Iterator<String> {
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return downloadPage(url);
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} catch (final UnsupportedEncodingException e) {
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errorLogList.add(e.getMessage());
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errorLogList.put(e.getClass().getName(), e.getMessage());
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throw new CollectorException(e);
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}
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}
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@ -137,7 +139,7 @@ public class OaiIterator implements Iterator<String> {
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+ "?verb=ListRecords&resumptionToken="
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+ URLEncoder.encode(resumptionToken, "UTF-8"));
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} catch (final UnsupportedEncodingException e) {
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errorLogList.add(e.getMessage());
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errorLogList.put(e.getClass().getName(), e.getMessage());
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throw new CollectorException(e);
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}
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}
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@ -150,14 +152,14 @@ public class OaiIterator implements Iterator<String> {
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doc = reader.read(new StringReader(xml));
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} catch (final DocumentException e) {
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log.warn("Error parsing xml, I try to clean it. {}", e.getMessage());
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errorLogList.add(e.getMessage());
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errorLogList.put(e.getClass().getName(), e.getMessage());
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final String cleaned = XmlCleaner.cleanAllEntities(xml);
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try {
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doc = reader.read(new StringReader(cleaned));
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} catch (final DocumentException e1) {
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final String resumptionToken = extractResumptionToken(xml);
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if (resumptionToken == null) {
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errorLogList.add(e1.getMessage());
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errorLogList.put(e1.getClass().getName(), e1.getMessage());
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throw new CollectorException("Error parsing cleaned document:\n" + cleaned, e1);
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}
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return resumptionToken;
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@ -166,15 +168,15 @@ public class OaiIterator implements Iterator<String> {
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final Node errorNode = doc.selectSingleNode("/*[local-name()='OAI-PMH']/*[local-name()='error']");
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if (errorNode != null) {
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final String code = errorNode.valueOf("@code");
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if ("noRecordsMatch".equalsIgnoreCase(code.trim())) {
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final String code = errorNode.valueOf("@code").trim();
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if ("noRecordsMatch".equalsIgnoreCase(code)) {
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final String msg = "noRecordsMatch for oai call : " + url;
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log.warn(msg);
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errorLogList.add(msg);
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errorLogList.put(REPORT_PREFIX + code, msg);
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return null;
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} else {
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final String msg = code + " - " + errorNode.getText();
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errorLogList.add(msg);
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errorLogList.put(REPORT_PREFIX + "error", msg);
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throw new CollectorException(msg);
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}
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}
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@ -186,7 +188,7 @@ public class OaiIterator implements Iterator<String> {
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return doc.valueOf("//*[local-name()='resumptionToken']");
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}
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public CollectorPluginErrorLogList getErrorLogList() {
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public CollectorPluginReport getErrorLogList() {
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return errorLogList;
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}
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}
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@ -3,7 +3,8 @@ package eu.dnetlib.dhp.collection.plugin.oai;
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import java.util.Iterator;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
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import eu.dnetlib.dhp.collection.worker.utils.HttpClientParams;
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import eu.dnetlib.dhp.collection.worker.utils.HttpConnector2;
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public class OaiIteratorFactory {
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@ -16,13 +17,15 @@ public class OaiIteratorFactory {
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final String set,
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final String fromDate,
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final String untilDate,
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final CollectorPluginErrorLogList errorLogList) {
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return new OaiIterator(baseUrl, mdFormat, set, fromDate, untilDate, getHttpConnector(), errorLogList);
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final HttpClientParams clientParams,
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final CollectorPluginReport errorLogList) {
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return new OaiIterator(baseUrl, mdFormat, set, fromDate, untilDate, getHttpConnector(clientParams),
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errorLogList);
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}
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private HttpConnector2 getHttpConnector() {
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private HttpConnector2 getHttpConnector(HttpClientParams clientParams) {
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if (httpConnector == null)
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httpConnector = new HttpConnector2();
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httpConnector = new HttpConnector2(clientParams);
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return httpConnector;
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}
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}
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@ -1,14 +1,13 @@
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package eu.dnetlib.dhp.collection.worker;
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import static eu.dnetlib.dhp.aggregation.common.AggregationConstants.SEQUENCE_FILE_NAME;
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import static eu.dnetlib.dhp.application.ApplicationUtils.*;
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import java.io.IOException;
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import java.net.URI;
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import java.util.concurrent.atomic.AtomicInteger;
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import eu.dnetlib.dhp.message.Message;
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import eu.dnetlib.dhp.message.MessageSender;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.hadoop.fs.Path;
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import org.apache.hadoop.io.IntWritable;
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import org.apache.hadoop.io.SequenceFile;
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@ -16,10 +15,14 @@ import org.apache.hadoop.io.Text;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import eu.dnetlib.data.mdstore.manager.common.model.MDStoreVersion;
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import eu.dnetlib.dhp.collection.plugin.CollectorPlugin;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginFactory;
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import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
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import eu.dnetlib.dhp.collection.worker.utils.HttpClientParams;
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import eu.dnetlib.dhp.collection.worker.utils.UnknownCollectorPluginException;
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import eu.dnetlib.dhp.collector.worker.model.ApiDescriptor;
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import eu.dnetlib.dhp.message.MessageSender;
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public class CollectorWorker {
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@ -27,70 +30,71 @@ public class CollectorWorker {
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private final ApiDescriptor api;
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private final String hdfsuri;
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private final Configuration conf;
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private final String hdfsPath;
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private final MDStoreVersion mdStoreVersion;
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private final HttpClientParams clientParams;
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private final CollectorPluginReport report;
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private final MessageSender messageSender;
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public CollectorWorker(
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final ApiDescriptor api,
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final String hdfsuri,
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final String hdfsPath,
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final MessageSender messageSender) {
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final Configuration conf,
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final MDStoreVersion mdStoreVersion,
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final HttpClientParams clientParams,
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final MessageSender messageSender,
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final CollectorPluginReport report) {
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this.api = api;
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this.hdfsuri = hdfsuri;
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this.hdfsPath = hdfsPath;
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this.conf = conf;
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this.mdStoreVersion = mdStoreVersion;
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this.clientParams = clientParams;
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this.messageSender = messageSender;
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this.report = report;
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}
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public CollectorPluginErrorLogList collect() throws IOException, CollectorException {
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public void collect() throws UnknownCollectorPluginException, CollectorException, IOException {
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// ====== Init HDFS File System Object
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Configuration conf = new Configuration();
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// Set FileSystem URI
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conf.set("fs.defaultFS", hdfsuri);
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// Because of Maven
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conf.set("fs.hdfs.impl", org.apache.hadoop.hdfs.DistributedFileSystem.class.getName());
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conf.set("fs.file.impl", org.apache.hadoop.fs.LocalFileSystem.class.getName());
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final String outputPath = mdStoreVersion.getHdfsPath() + SEQUENCE_FILE_NAME;
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||||
log.info("outputPath path is {}", outputPath);
|
||||
|
||||
System.setProperty("hadoop.home.dir", "/");
|
||||
// Get the filesystem - HDFS
|
||||
|
||||
FileSystem.get(URI.create(hdfsuri), conf);
|
||||
Path hdfswritepath = new Path(hdfsPath);
|
||||
|
||||
log.info("Created path " + hdfswritepath.toString());
|
||||
|
||||
final CollectorPlugin plugin = CollectorPluginFactory.getPluginByProtocol(api.getProtocol());
|
||||
final CollectorPlugin plugin = CollectorPluginFactory.getPluginByProtocol(clientParams, api.getProtocol());
|
||||
final AtomicInteger counter = new AtomicInteger(0);
|
||||
|
||||
try (SequenceFile.Writer writer = SequenceFile
|
||||
.createWriter(
|
||||
conf,
|
||||
SequenceFile.Writer.file(hdfswritepath),
|
||||
SequenceFile.Writer.file(new Path(outputPath)),
|
||||
SequenceFile.Writer.keyClass(IntWritable.class),
|
||||
SequenceFile.Writer.valueClass(Text.class))) {
|
||||
final IntWritable key = new IntWritable(counter.get());
|
||||
final Text value = new Text();
|
||||
plugin
|
||||
.collect(api)
|
||||
.collect(api, report)
|
||||
.forEach(
|
||||
content -> {
|
||||
key.set(counter.getAndIncrement());
|
||||
if (counter.get()% 500 == 0)
|
||||
if (counter.get() % 500 == 0)
|
||||
messageSender.sendMessage(counter.longValue(), null);
|
||||
value.set(content);
|
||||
try {
|
||||
writer.append(key, value);
|
||||
} catch (IOException e) {
|
||||
} catch (Throwable e) {
|
||||
report.put(e.getClass().getName(), e.getMessage());
|
||||
log.warn("setting report to failed");
|
||||
report.setSuccess(false);
|
||||
throw new RuntimeException(e);
|
||||
}
|
||||
});
|
||||
} catch (Throwable e) {
|
||||
report.put(e.getClass().getName(), e.getMessage());
|
||||
log.warn("setting report to failed");
|
||||
report.setSuccess(false);
|
||||
} finally {
|
||||
messageSender.sendMessage(counter.longValue(),counter.longValue());
|
||||
return plugin.getCollectionErrors();
|
||||
messageSender.sendMessage(counter.longValue(), counter.longValue());
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -6,22 +6,27 @@ import static eu.dnetlib.dhp.aggregation.common.AggregationUtility.*;
|
|||
import static eu.dnetlib.dhp.application.ApplicationUtils.*;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.Optional;
|
||||
|
||||
import eu.dnetlib.dhp.message.Message;
|
||||
import eu.dnetlib.dhp.message.MessageSender;
|
||||
import org.apache.commons.cli.ParseException;
|
||||
import org.apache.commons.io.FileSystemUtils;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.hadoop.conf.Configuration;
|
||||
import org.apache.hadoop.fs.FSDataOutputStream;
|
||||
import org.apache.hadoop.fs.FileSystem;
|
||||
import org.apache.hadoop.fs.Path;
|
||||
import org.jetbrains.annotations.NotNull;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.data.mdstore.manager.common.model.MDStoreVersion;
|
||||
import eu.dnetlib.dhp.aggregation.common.AggregationUtility;
|
||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginFactory;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.HttpClientParams;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.UnknownCollectorPluginException;
|
||||
import eu.dnetlib.dhp.collector.worker.model.ApiDescriptor;
|
||||
import eu.dnetlib.dhp.message.MessageSender;
|
||||
|
||||
/**
|
||||
* CollectorWorkerApplication is the main class responsible to start the metadata collection process, storing the outcomes
|
||||
|
@ -35,19 +40,18 @@ public class CollectorWorkerApplication {
|
|||
|
||||
private static final Logger log = LoggerFactory.getLogger(CollectorWorkerApplication.class);
|
||||
|
||||
public static final String COLLECTOR_WORKER_ERRORS = "collectorWorker-errors";
|
||||
|
||||
/**
|
||||
* @param args
|
||||
*/
|
||||
public static void main(final String[] args) throws ParseException, IOException, CollectorException {
|
||||
public static void main(final String[] args)
|
||||
throws ParseException, IOException, UnknownCollectorPluginException, CollectorException {
|
||||
|
||||
final ArgumentApplicationParser argumentParser = new ArgumentApplicationParser(
|
||||
IOUtils
|
||||
.toString(
|
||||
CollectorWorker.class
|
||||
.getResourceAsStream(
|
||||
"/eu/dnetlib/dhp/collection/collector_parameter.json")));
|
||||
"/eu/dnetlib/dhp/collection/collector_worker_input_parameter.json")));
|
||||
argumentParser.parseArgument(args);
|
||||
|
||||
final String hdfsuri = argumentParser.get("namenode");
|
||||
|
@ -65,21 +69,61 @@ public class CollectorWorkerApplication {
|
|||
final String workflowId = argumentParser.get("workflowId");
|
||||
log.info("workflowId is {}", workflowId);
|
||||
|
||||
final MessageSender ms = new MessageSender(dnetMessageManagerURL,workflowId);
|
||||
final MessageSender ms = new MessageSender(dnetMessageManagerURL, workflowId);
|
||||
|
||||
final MDStoreVersion currentVersion = MAPPER.readValue(mdStoreVersion, MDStoreVersion.class);
|
||||
final String hdfsPath = currentVersion.getHdfsPath() + SEQUENCE_FILE_NAME;
|
||||
log.info("hdfs path is {}", hdfsPath);
|
||||
|
||||
final String reportPath = currentVersion.getHdfsPath() + REPORT_FILE_NAME;
|
||||
log.info("report path is {}", reportPath);
|
||||
|
||||
final HttpClientParams clientParams = getClientParams(argumentParser);
|
||||
|
||||
final ApiDescriptor api = MAPPER.readValue(apiDescriptor, ApiDescriptor.class);
|
||||
final Configuration conf = getHadoopConfiguration(hdfsuri);
|
||||
|
||||
final CollectorWorker worker = new CollectorWorker(api, hdfsuri, hdfsPath, ms);
|
||||
CollectorPluginErrorLogList errors = worker.collect();
|
||||
|
||||
populateOOZIEEnv(COLLECTOR_WORKER_ERRORS, errors.toString());
|
||||
|
||||
try (CollectorPluginReport report = new CollectorPluginReport(FileSystem.get(conf), new Path(reportPath))) {
|
||||
final CollectorWorker worker = new CollectorWorker(api, conf, currentVersion, clientParams, ms, report);
|
||||
worker.collect();
|
||||
report.setSuccess(true);
|
||||
} catch (Throwable e) {
|
||||
log.info("got exception {}, ignoring", e.getMessage());
|
||||
}
|
||||
}
|
||||
|
||||
private static HttpClientParams getClientParams(ArgumentApplicationParser argumentParser) {
|
||||
final HttpClientParams clientParams = new HttpClientParams();
|
||||
clientParams
|
||||
.setMaxNumberOfRetry(
|
||||
Optional
|
||||
.ofNullable(argumentParser.get("maxNumberOfRetry"))
|
||||
.map(Integer::parseInt)
|
||||
.orElse(HttpClientParams._maxNumberOfRetry));
|
||||
log.info("maxNumberOfRetry is {}", clientParams.getMaxNumberOfRetry());
|
||||
|
||||
clientParams
|
||||
.setRetryDelay(
|
||||
Optional
|
||||
.ofNullable(argumentParser.get("retryDelay"))
|
||||
.map(Integer::parseInt)
|
||||
.orElse(HttpClientParams._retryDelay));
|
||||
log.info("retryDelay is {}", clientParams.getRetryDelay());
|
||||
|
||||
clientParams
|
||||
.setConnectTimeOut(
|
||||
Optional
|
||||
.ofNullable(argumentParser.get("connectTimeOut"))
|
||||
.map(Integer::parseInt)
|
||||
.orElse(HttpClientParams._connectTimeOut));
|
||||
log.info("connectTimeOut is {}", clientParams.getConnectTimeOut());
|
||||
|
||||
clientParams
|
||||
.setReadTimeOut(
|
||||
Optional
|
||||
.ofNullable(argumentParser.get("readTimeOut"))
|
||||
.map(Integer::parseInt)
|
||||
.orElse(HttpClientParams._readTimeOut));
|
||||
log.info("readTimeOut is {}", clientParams.getReadTimeOut());
|
||||
return clientParams;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -0,0 +1,69 @@
|
|||
|
||||
package eu.dnetlib.dhp.collection.worker;
|
||||
|
||||
import static eu.dnetlib.dhp.aggregation.common.AggregationConstants.REPORT_FILE_NAME;
|
||||
import static eu.dnetlib.dhp.aggregation.common.AggregationUtility.*;
|
||||
import static eu.dnetlib.dhp.aggregation.common.AggregationUtility.MAPPER;
|
||||
import static eu.dnetlib.dhp.application.ApplicationUtils.getHadoopConfiguration;
|
||||
import static eu.dnetlib.dhp.application.ApplicationUtils.populateOOZIEEnv;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.Objects;
|
||||
|
||||
import org.apache.commons.cli.ParseException;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.hadoop.conf.Configuration;
|
||||
import org.apache.hadoop.yarn.webapp.hamlet.Hamlet;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.data.mdstore.manager.common.model.MDStoreVersion;
|
||||
import eu.dnetlib.dhp.aggregation.common.AggregationUtility;
|
||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.UnknownCollectorPluginException;
|
||||
|
||||
/**
|
||||
* CollectorWorkerReporter
|
||||
*/
|
||||
public class CollectorWorkerReporter {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(CollectorWorkerReporter.class);
|
||||
|
||||
/**
|
||||
* @param args
|
||||
*/
|
||||
public static void main(final String[] args) throws IOException, ParseException, CollectorException {
|
||||
|
||||
final ArgumentApplicationParser argumentParser = new ArgumentApplicationParser(
|
||||
IOUtils
|
||||
.toString(
|
||||
CollectorWorker.class
|
||||
.getResourceAsStream(
|
||||
"/eu/dnetlib/dhp/collection/collector_reporter_input_parameter.json")));
|
||||
argumentParser.parseArgument(args);
|
||||
|
||||
final String nameNode = argumentParser.get("namenode");
|
||||
log.info("nameNode is {}", nameNode);
|
||||
|
||||
final String mdStoreVersion = argumentParser.get("mdStoreVersion");
|
||||
log.info("mdStoreVersion is {}", mdStoreVersion);
|
||||
|
||||
final MDStoreVersion currentVersion = MAPPER.readValue(mdStoreVersion, MDStoreVersion.class);
|
||||
|
||||
final String reportPath = currentVersion.getHdfsPath() + REPORT_FILE_NAME;
|
||||
log.info("report path is {}", reportPath);
|
||||
|
||||
final Configuration conf = getHadoopConfiguration(nameNode);
|
||||
CollectorPluginReport report = readHdfsFileAs(conf, reportPath, CollectorPluginReport.class);
|
||||
if (Objects.isNull(report)) {
|
||||
throw new CollectorException("collection report is NULL");
|
||||
}
|
||||
log.info("report success: {}, size: {}", report.isSuccess(), report.size());
|
||||
report.forEach((k, v) -> log.info("{} - {}", k, v));
|
||||
if (!report.isSuccess()) {
|
||||
throw new CollectorException("collection report indicates a failure");
|
||||
}
|
||||
}
|
||||
|
||||
}
|
|
@ -1,19 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.collection.worker.utils;
|
||||
|
||||
import java.util.LinkedList;
|
||||
|
||||
public class CollectorPluginErrorLogList extends LinkedList<String> {
|
||||
|
||||
private static final long serialVersionUID = -6925786561303289704L;
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
String log = "";
|
||||
int index = 0;
|
||||
for (final String errorMessage : this) {
|
||||
log += String.format("Retry #%s: %s / ", index++, errorMessage);
|
||||
}
|
||||
return log;
|
||||
}
|
||||
}
|
|
@ -7,14 +7,15 @@ import eu.dnetlib.dhp.collection.worker.CollectorException;
|
|||
|
||||
public class CollectorPluginFactory {
|
||||
|
||||
public static CollectorPlugin getPluginByProtocol(final String protocol) throws CollectorException {
|
||||
public static CollectorPlugin getPluginByProtocol(final HttpClientParams clientParams, final String protocol)
|
||||
throws UnknownCollectorPluginException {
|
||||
if (protocol == null)
|
||||
throw new CollectorException("protocol cannot be null");
|
||||
throw new UnknownCollectorPluginException("protocol cannot be null");
|
||||
switch (protocol.toLowerCase().trim()) {
|
||||
case "oai":
|
||||
return new OaiCollectorPlugin();
|
||||
return new OaiCollectorPlugin(clientParams);
|
||||
default:
|
||||
throw new CollectorException("UNknown protocol");
|
||||
throw new UnknownCollectorPluginException("Unknown protocol");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
|
@ -0,0 +1,64 @@
|
|||
|
||||
package eu.dnetlib.dhp.collection.worker.utils;
|
||||
|
||||
import static eu.dnetlib.dhp.aggregation.common.AggregationUtility.MAPPER;
|
||||
|
||||
import java.io.Closeable;
|
||||
import java.io.IOException;
|
||||
import java.util.LinkedHashMap;
|
||||
import java.util.Objects;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.hadoop.fs.FSDataOutputStream;
|
||||
import org.apache.hadoop.fs.FileSystem;
|
||||
import org.apache.hadoop.fs.Path;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
|
||||
import eu.dnetlib.dhp.application.ApplicationUtils;
|
||||
|
||||
public class CollectorPluginReport extends LinkedHashMap<String, String> implements Closeable {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(CollectorPluginReport.class);
|
||||
|
||||
@JsonIgnore
|
||||
private FileSystem fs;
|
||||
|
||||
@JsonIgnore
|
||||
private Path path;
|
||||
|
||||
@JsonIgnore
|
||||
private FSDataOutputStream fos;
|
||||
|
||||
public static String SUCCESS = "success";
|
||||
|
||||
public CollectorPluginReport() {
|
||||
}
|
||||
|
||||
public CollectorPluginReport(FileSystem fs, Path path) throws IOException {
|
||||
this.fs = fs;
|
||||
this.path = path;
|
||||
|
||||
this.fos = fs.create(path);
|
||||
}
|
||||
|
||||
public Boolean isSuccess() {
|
||||
return Boolean.valueOf(get(SUCCESS));
|
||||
}
|
||||
|
||||
public void setSuccess(Boolean success) {
|
||||
put(SUCCESS, String.valueOf(success));
|
||||
}
|
||||
|
||||
@Override
|
||||
public void close() throws IOException {
|
||||
final String data = MAPPER.writeValueAsString(this);
|
||||
if (Objects.nonNull(fos)) {
|
||||
log.info("writing report {} to {}", data, path.toString());
|
||||
IOUtils.write(data, fos);
|
||||
ApplicationUtils.populateOOZIEEnv(this);
|
||||
}
|
||||
}
|
||||
}
|
|
@ -0,0 +1,62 @@
|
|||
|
||||
package eu.dnetlib.dhp.collection.worker.utils;
|
||||
|
||||
/**
|
||||
* Bundles the http connection parameters driving the client behaviour.
|
||||
*/
|
||||
public class HttpClientParams {
|
||||
|
||||
public static int _maxNumberOfRetry = 3;
|
||||
public static int _retryDelay = 10; // seconds
|
||||
public static int _connectTimeOut = 10; // seconds
|
||||
public static int _readTimeOut = 30; // seconds
|
||||
|
||||
private int maxNumberOfRetry;
|
||||
private int retryDelay;
|
||||
private int connectTimeOut;
|
||||
private int readTimeOut;
|
||||
|
||||
public HttpClientParams() {
|
||||
this(_maxNumberOfRetry, _retryDelay, _connectTimeOut, _readTimeOut);
|
||||
}
|
||||
|
||||
public HttpClientParams(int maxNumberOfRetry, int retryDelay, int connectTimeOut, int readTimeOut) {
|
||||
this.maxNumberOfRetry = maxNumberOfRetry;
|
||||
this.retryDelay = retryDelay;
|
||||
this.connectTimeOut = connectTimeOut;
|
||||
this.readTimeOut = readTimeOut;
|
||||
}
|
||||
|
||||
public int getMaxNumberOfRetry() {
|
||||
return maxNumberOfRetry;
|
||||
}
|
||||
|
||||
public void setMaxNumberOfRetry(int maxNumberOfRetry) {
|
||||
this.maxNumberOfRetry = maxNumberOfRetry;
|
||||
}
|
||||
|
||||
public int getRetryDelay() {
|
||||
return retryDelay;
|
||||
}
|
||||
|
||||
public void setRetryDelay(int retryDelay) {
|
||||
this.retryDelay = retryDelay;
|
||||
}
|
||||
|
||||
public void setConnectTimeOut(int connectTimeOut) {
|
||||
this.connectTimeOut = connectTimeOut;
|
||||
}
|
||||
|
||||
public int getConnectTimeOut() {
|
||||
return connectTimeOut;
|
||||
}
|
||||
|
||||
public int getReadTimeOut() {
|
||||
return readTimeOut;
|
||||
}
|
||||
|
||||
public void setReadTimeOut(int readTimeOut) {
|
||||
this.readTimeOut = readTimeOut;
|
||||
}
|
||||
|
||||
}
|
|
@ -1,218 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.collection.worker.utils;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.*;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.commons.lang.math.NumberUtils;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.dhp.collection.worker.CollectorException;
|
||||
|
||||
@Deprecated
|
||||
public class HttpConnector {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(HttpConnector.class);
|
||||
|
||||
private int maxNumberOfRetry = 6;
|
||||
private int defaultDelay = 120; // seconds
|
||||
private int readTimeOut = 120; // seconds
|
||||
|
||||
private String responseType = null;
|
||||
|
||||
private final String userAgent = "Mozilla/5.0 (compatible; OAI; +http://www.openaire.eu)";
|
||||
|
||||
public HttpConnector() {
|
||||
CookieHandler.setDefault(new CookieManager(null, CookiePolicy.ACCEPT_ALL));
|
||||
}
|
||||
|
||||
/**
|
||||
* Given the URL returns the content via HTTP GET
|
||||
*
|
||||
* @param requestUrl the URL
|
||||
* @return the content of the downloaded resource
|
||||
* @throws CollectorException when retrying more than maxNumberOfRetry times
|
||||
*/
|
||||
public String getInputSource(final String requestUrl) throws CollectorException {
|
||||
return attemptDownloadAsString(requestUrl, 1, new CollectorPluginErrorLogList());
|
||||
}
|
||||
|
||||
/**
|
||||
* Given the URL returns the content via HTTP GET
|
||||
*
|
||||
* @param requestUrl the URL
|
||||
* @param errorLogList the list of errors
|
||||
* @return the content of the downloaded resource
|
||||
* @throws CollectorException when retrying more than maxNumberOfRetry times
|
||||
*/
|
||||
public String getInputSource(final String requestUrl, CollectorPluginErrorLogList errorLogList)
|
||||
throws CollectorException {
|
||||
return attemptDownloadAsString(requestUrl, 1, errorLogList);
|
||||
}
|
||||
|
||||
/**
|
||||
* Given the URL returns the content as a stream via HTTP GET
|
||||
*
|
||||
* @param requestUrl the URL
|
||||
* @return the content of the downloaded resource as InputStream
|
||||
* @throws CollectorException when retrying more than maxNumberOfRetry times
|
||||
*/
|
||||
public InputStream getInputSourceAsStream(final String requestUrl) throws CollectorException {
|
||||
return attemptDownload(requestUrl, 1, new CollectorPluginErrorLogList());
|
||||
}
|
||||
|
||||
private String attemptDownloadAsString(
|
||||
final String requestUrl, final int retryNumber, final CollectorPluginErrorLogList errorList)
|
||||
throws CollectorException {
|
||||
|
||||
log.info("requesting URL [{}]", requestUrl);
|
||||
try {
|
||||
final InputStream s = attemptDownload(requestUrl, 1, new CollectorPluginErrorLogList());
|
||||
try {
|
||||
return IOUtils.toString(s);
|
||||
} catch (final IOException e) {
|
||||
log.error("error while retrieving from http-connection occurred: {}", requestUrl, e);
|
||||
Thread.sleep(defaultDelay * 1000);
|
||||
errorList.add(e.getMessage());
|
||||
return attemptDownloadAsString(requestUrl, retryNumber + 1, errorList);
|
||||
} finally {
|
||||
IOUtils.closeQuietly(s);
|
||||
}
|
||||
} catch (final InterruptedException e) {
|
||||
throw new CollectorException(e);
|
||||
}
|
||||
}
|
||||
|
||||
private InputStream attemptDownload(
|
||||
final String requestUrl, final int retryNumber, final CollectorPluginErrorLogList errorList)
|
||||
throws CollectorException {
|
||||
|
||||
if (retryNumber > maxNumberOfRetry) {
|
||||
throw new CollectorException("Max number of retries exceeded. Cause: \n " + errorList);
|
||||
}
|
||||
|
||||
log.debug("requesting URL [{}], try {}", requestUrl, retryNumber);
|
||||
try {
|
||||
InputStream input = null;
|
||||
|
||||
try {
|
||||
final HttpURLConnection urlConn = (HttpURLConnection) new URL(requestUrl).openConnection();
|
||||
urlConn.setInstanceFollowRedirects(false);
|
||||
urlConn.setReadTimeout(readTimeOut * 1000);
|
||||
urlConn.addRequestProperty("User-Agent", userAgent);
|
||||
|
||||
if (log.isDebugEnabled()) {
|
||||
logHeaderFields(urlConn);
|
||||
}
|
||||
|
||||
final int retryAfter = obtainRetryAfter(urlConn.getHeaderFields());
|
||||
if (retryAfter > 0 && urlConn.getResponseCode() == HttpURLConnection.HTTP_UNAVAILABLE) {
|
||||
log.warn("waiting and repeating request after {} sec.", retryAfter);
|
||||
Thread.sleep(retryAfter * 1000);
|
||||
errorList.add("503 Service Unavailable");
|
||||
urlConn.disconnect();
|
||||
return attemptDownload(requestUrl, retryNumber + 1, errorList);
|
||||
} else if (urlConn.getResponseCode() == HttpURLConnection.HTTP_MOVED_PERM
|
||||
|| urlConn.getResponseCode() == HttpURLConnection.HTTP_MOVED_TEMP) {
|
||||
final String newUrl = obtainNewLocation(urlConn.getHeaderFields());
|
||||
log.debug("The requested url has been moved to {}", newUrl);
|
||||
errorList
|
||||
.add(
|
||||
String
|
||||
.format(
|
||||
"%s %s. Moved to: %s",
|
||||
urlConn.getResponseCode(), urlConn.getResponseMessage(), newUrl));
|
||||
urlConn.disconnect();
|
||||
return attemptDownload(newUrl, retryNumber + 1, errorList);
|
||||
} else if (urlConn.getResponseCode() != HttpURLConnection.HTTP_OK) {
|
||||
final String msg = String
|
||||
.format("HTTP error: %s %s", urlConn.getResponseCode(), urlConn.getResponseMessage());
|
||||
log.error(msg);
|
||||
Thread.sleep(defaultDelay * 1000);
|
||||
errorList.add(msg);
|
||||
urlConn.disconnect();
|
||||
return attemptDownload(requestUrl, retryNumber + 1, errorList);
|
||||
} else {
|
||||
input = urlConn.getInputStream();
|
||||
responseType = urlConn.getContentType();
|
||||
return input;
|
||||
}
|
||||
} catch (final IOException e) {
|
||||
log.error("error while retrieving from http-connection occurred: {}", requestUrl, e);
|
||||
Thread.sleep(defaultDelay * 1000);
|
||||
errorList.add(e.getMessage());
|
||||
return attemptDownload(requestUrl, retryNumber + 1, errorList);
|
||||
}
|
||||
} catch (final InterruptedException e) {
|
||||
throw new CollectorException(e);
|
||||
}
|
||||
}
|
||||
|
||||
private void logHeaderFields(final HttpURLConnection urlConn) throws IOException {
|
||||
log.debug("StatusCode: {}", urlConn.getResponseMessage());
|
||||
|
||||
for (final Map.Entry<String, List<String>> e : urlConn.getHeaderFields().entrySet()) {
|
||||
if (e.getKey() != null) {
|
||||
for (final String v : e.getValue()) {
|
||||
log.debug(" key: {} value: {}", e.getKey(), v);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
private int obtainRetryAfter(final Map<String, List<String>> headerMap) {
|
||||
for (final String key : headerMap.keySet()) {
|
||||
if (key != null
|
||||
&& key.toLowerCase().equals("retry-after")
|
||||
&& headerMap.get(key).size() > 0
|
||||
&& NumberUtils.isNumber(headerMap.get(key).get(0))) {
|
||||
return Integer.parseInt(headerMap.get(key).get(0)) + 10;
|
||||
}
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
|
||||
private String obtainNewLocation(final Map<String, List<String>> headerMap)
|
||||
throws CollectorException {
|
||||
for (final String key : headerMap.keySet()) {
|
||||
if (key != null && key.toLowerCase().equals("location") && headerMap.get(key).size() > 0) {
|
||||
return headerMap.get(key).get(0);
|
||||
}
|
||||
}
|
||||
throw new CollectorException(
|
||||
"The requested url has been MOVED, but 'location' param is MISSING");
|
||||
}
|
||||
|
||||
public int getMaxNumberOfRetry() {
|
||||
return maxNumberOfRetry;
|
||||
}
|
||||
|
||||
public void setMaxNumberOfRetry(final int maxNumberOfRetry) {
|
||||
this.maxNumberOfRetry = maxNumberOfRetry;
|
||||
}
|
||||
|
||||
public int getDefaultDelay() {
|
||||
return defaultDelay;
|
||||
}
|
||||
|
||||
public void setDefaultDelay(final int defaultDelay) {
|
||||
this.defaultDelay = defaultDelay;
|
||||
}
|
||||
|
||||
public int getReadTimeOut() {
|
||||
return readTimeOut;
|
||||
}
|
||||
|
||||
public void setReadTimeOut(final int readTimeOut) {
|
||||
this.readTimeOut = readTimeOut;
|
||||
}
|
||||
|
||||
public String getResponseType() {
|
||||
return responseType;
|
||||
}
|
||||
}
|
|
@ -1,24 +1,17 @@
|
|||
|
||||
package eu.dnetlib.dhp.collection.worker.utils;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.*;
|
||||
import java.security.GeneralSecurityException;
|
||||
import java.security.cert.X509Certificate;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import javax.net.ssl.HttpsURLConnection;
|
||||
import javax.net.ssl.SSLContext;
|
||||
import javax.net.ssl.TrustManager;
|
||||
import javax.net.ssl.X509TrustManager;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.commons.lang3.math.NumberUtils;
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
import org.apache.http.HttpHeaders;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.dhp.collection.worker.CollectorException;
|
||||
|
||||
|
@ -29,84 +22,80 @@ import eu.dnetlib.dhp.collection.worker.CollectorException;
|
|||
*/
|
||||
public class HttpConnector2 {
|
||||
|
||||
private static final Log log = LogFactory.getLog(HttpConnector.class);
|
||||
private static final Logger log = LoggerFactory.getLogger(HttpConnector2.class);
|
||||
|
||||
private int maxNumberOfRetry = 6;
|
||||
private int defaultDelay = 120; // seconds
|
||||
private int readTimeOut = 120; // seconds
|
||||
private static final String REPORT_PREFIX = "http:";
|
||||
|
||||
private HttpClientParams clientParams;
|
||||
|
||||
private String responseType = null;
|
||||
|
||||
private String userAgent = "Mozilla/5.0 (compatible; OAI; +http://www.openaire.eu)";
|
||||
|
||||
public HttpConnector2() {
|
||||
this(new HttpClientParams());
|
||||
}
|
||||
|
||||
public HttpConnector2(HttpClientParams clientParams) {
|
||||
this.clientParams = clientParams;
|
||||
CookieHandler.setDefault(new CookieManager(null, CookiePolicy.ACCEPT_ALL));
|
||||
}
|
||||
|
||||
/**
|
||||
* @see HttpConnector2#getInputSource(java.lang.String, eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList)
|
||||
*/
|
||||
public String getInputSource(final String requestUrl) throws CollectorException {
|
||||
return attemptDownlaodAsString(requestUrl, 1, new CollectorPluginErrorLogList());
|
||||
}
|
||||
|
||||
/**
|
||||
* @see HttpConnector2#getInputSource(java.lang.String, eu.dnetlib.dhp.collection.worker.utils.CollectorPluginErrorLogList)
|
||||
* @see HttpConnector2#getInputSource(java.lang.String, CollectorPluginReport)
|
||||
*/
|
||||
public InputStream getInputSourceAsStream(final String requestUrl) throws CollectorException {
|
||||
return IOUtils.toInputStream(getInputSource(requestUrl));
|
||||
}
|
||||
|
||||
/**
|
||||
* @see HttpConnector2#getInputSource(java.lang.String, CollectorPluginReport)
|
||||
*/
|
||||
public String getInputSource(final String requestUrl) throws CollectorException {
|
||||
return attemptDownloadAsString(requestUrl, 1, new CollectorPluginReport());
|
||||
}
|
||||
|
||||
/**
|
||||
* Given the URL returns the content via HTTP GET
|
||||
*
|
||||
* @param requestUrl the URL
|
||||
* @param errorLogList the list of errors
|
||||
* @param report the list of errors
|
||||
* @return the content of the downloaded resource
|
||||
* @throws CollectorException when retrying more than maxNumberOfRetry times
|
||||
*/
|
||||
public String getInputSource(final String requestUrl, CollectorPluginErrorLogList errorLogList)
|
||||
public String getInputSource(final String requestUrl, CollectorPluginReport report)
|
||||
throws CollectorException {
|
||||
return attemptDownlaodAsString(requestUrl, 1, errorLogList);
|
||||
return attemptDownloadAsString(requestUrl, 1, report);
|
||||
}
|
||||
|
||||
private String attemptDownlaodAsString(final String requestUrl, final int retryNumber,
|
||||
final CollectorPluginErrorLogList errorList)
|
||||
throws CollectorException {
|
||||
try {
|
||||
InputStream s = attemptDownload(requestUrl, 1, new CollectorPluginErrorLogList());
|
||||
try {
|
||||
private String attemptDownloadAsString(final String requestUrl, final int retryNumber,
|
||||
final CollectorPluginReport report) throws CollectorException {
|
||||
|
||||
try (InputStream s = attemptDownload(requestUrl, retryNumber, report)) {
|
||||
return IOUtils.toString(s);
|
||||
} catch (IOException e) {
|
||||
log.error("error while retrieving from http-connection occured: " + requestUrl, e);
|
||||
Thread.sleep(defaultDelay * 1000);
|
||||
errorList.add(e.getMessage());
|
||||
return attemptDownlaodAsString(requestUrl, retryNumber + 1, errorList);
|
||||
} finally {
|
||||
IOUtils.closeQuietly(s);
|
||||
}
|
||||
} catch (InterruptedException e) {
|
||||
log.error(e.getMessage(), e);
|
||||
throw new CollectorException(e);
|
||||
}
|
||||
}
|
||||
|
||||
private InputStream attemptDownload(final String requestUrl, final int retryNumber,
|
||||
final CollectorPluginErrorLogList errorList)
|
||||
throws CollectorException {
|
||||
final CollectorPluginReport report) throws CollectorException, IOException {
|
||||
|
||||
if (retryNumber > maxNumberOfRetry) {
|
||||
throw new CollectorException("Max number of retries exceeded. Cause: \n " + errorList);
|
||||
if (retryNumber > getClientParams().getMaxNumberOfRetry()) {
|
||||
throw new CollectorException("Max number of retries exceeded. Cause: \n " + report);
|
||||
}
|
||||
|
||||
log.debug("Downloading " + requestUrl + " - try: " + retryNumber);
|
||||
try {
|
||||
log.info("Downloading attempt {} [{}]", retryNumber, requestUrl);
|
||||
|
||||
InputStream input = null;
|
||||
|
||||
try {
|
||||
final HttpURLConnection urlConn = (HttpURLConnection) new URL(requestUrl).openConnection();
|
||||
urlConn.setInstanceFollowRedirects(false);
|
||||
urlConn.setReadTimeout(readTimeOut * 1000);
|
||||
urlConn.addRequestProperty("User-Agent", userAgent);
|
||||
urlConn.setReadTimeout(getClientParams().getReadTimeOut() * 1000);
|
||||
urlConn.setConnectTimeout(getClientParams().getConnectTimeOut() * 1000);
|
||||
urlConn.addRequestProperty(HttpHeaders.USER_AGENT, userAgent);
|
||||
|
||||
if (log.isDebugEnabled()) {
|
||||
logHeaderFields(urlConn);
|
||||
|
@ -121,27 +110,26 @@ public class HttpConnector2 {
|
|||
if (is3xx(urlConn.getResponseCode())) {
|
||||
// REDIRECTS
|
||||
final String newUrl = obtainNewLocation(urlConn.getHeaderFields());
|
||||
log.debug(String.format("The requested url %s has been moved to %s", requestUrl, newUrl));
|
||||
errorList
|
||||
.add(
|
||||
String
|
||||
.format(
|
||||
"%s %s %s. Moved to: %s", requestUrl, urlConn.getResponseCode(),
|
||||
urlConn.getResponseMessage(), newUrl));
|
||||
log.info(String.format("The requested url has been moved to %s", newUrl));
|
||||
report
|
||||
.put(
|
||||
REPORT_PREFIX + urlConn.getResponseCode(),
|
||||
String.format("Moved to: %s", newUrl));
|
||||
urlConn.disconnect();
|
||||
if (retryAfter > 0)
|
||||
Thread.sleep(retryAfter * 1000);
|
||||
return attemptDownload(newUrl, retryNumber + 1, errorList);
|
||||
if (retryAfter > 0) {
|
||||
backoffAndSleep(retryAfter);
|
||||
}
|
||||
return attemptDownload(newUrl, retryNumber + 1, report);
|
||||
}
|
||||
if (is4xx(urlConn.getResponseCode())) {
|
||||
// CLIENT ERROR, DO NOT RETRY
|
||||
errorList
|
||||
.add(
|
||||
report
|
||||
.put(
|
||||
REPORT_PREFIX + urlConn.getResponseCode(),
|
||||
String
|
||||
.format(
|
||||
"%s error %s: %s", requestUrl, urlConn.getResponseCode(),
|
||||
urlConn.getResponseMessage()));
|
||||
throw new CollectorException("4xx error: request will not be repeated. " + errorList);
|
||||
"%s error: %s", requestUrl, urlConn.getResponseMessage()));
|
||||
throw new CollectorException("4xx error: request will not be repeated. " + report);
|
||||
}
|
||||
if (is5xx(urlConn.getResponseCode())) {
|
||||
// SERVER SIDE ERRORS RETRY ONLY on 503
|
||||
|
@ -152,39 +140,33 @@ public class HttpConnector2 {
|
|||
.warn(
|
||||
requestUrl + " - waiting and repeating request after suggested retry-after "
|
||||
+ retryAfter + " sec.");
|
||||
Thread.sleep(retryAfter * 1000);
|
||||
backoffAndSleep(retryAfter * 1000);
|
||||
} else {
|
||||
log
|
||||
.warn(
|
||||
requestUrl + " - waiting and repeating request after default delay of "
|
||||
+ defaultDelay + " sec.");
|
||||
Thread.sleep(defaultDelay * 1000);
|
||||
+ getClientParams().getRetryDelay() + " sec.");
|
||||
backoffAndSleep(retryNumber * getClientParams().getRetryDelay() * 1000);
|
||||
}
|
||||
errorList.add(requestUrl + " 503 Service Unavailable");
|
||||
report.put(REPORT_PREFIX + urlConn.getResponseCode(), requestUrl);
|
||||
urlConn.disconnect();
|
||||
return attemptDownload(requestUrl, retryNumber + 1, errorList);
|
||||
return attemptDownload(requestUrl, retryNumber + 1, report);
|
||||
default:
|
||||
errorList
|
||||
.add(
|
||||
report
|
||||
.put(
|
||||
REPORT_PREFIX + urlConn.getResponseCode(),
|
||||
String
|
||||
.format(
|
||||
"%s Error %s: %s", requestUrl, urlConn.getResponseCode(),
|
||||
urlConn.getResponseMessage()));
|
||||
throw new CollectorException(urlConn.getResponseCode() + " error " + errorList);
|
||||
"%s Error: %s", requestUrl, urlConn.getResponseMessage()));
|
||||
throw new CollectorException(urlConn.getResponseCode() + " error " + report);
|
||||
}
|
||||
}
|
||||
throw new CollectorException(
|
||||
String.format("Unexpected status code: %s error %s", urlConn.getResponseCode(), errorList));
|
||||
} catch (MalformedURLException | NoRouteToHostException e) {
|
||||
errorList.add(String.format("Error: %s for request url: %s", e.getCause(), requestUrl));
|
||||
throw new CollectorException(e + "error " + errorList);
|
||||
} catch (IOException e) {
|
||||
Thread.sleep(defaultDelay * 1000);
|
||||
errorList.add(requestUrl + " " + e.getMessage());
|
||||
return attemptDownload(requestUrl, retryNumber + 1, errorList);
|
||||
}
|
||||
} catch (InterruptedException e) {
|
||||
throw new CollectorException(e);
|
||||
String.format("Unexpected status code: %s error %s", urlConn.getResponseCode(), report));
|
||||
} catch (MalformedURLException | SocketException | UnknownHostException e) {
|
||||
log.error(e.getMessage(), e);
|
||||
report.put(e.getClass().getName(), e.getMessage());
|
||||
throw new CollectorException(e.getMessage(), e);
|
||||
}
|
||||
}
|
||||
|
||||
|
@ -200,12 +182,21 @@ public class HttpConnector2 {
|
|||
}
|
||||
}
|
||||
|
||||
private void backoffAndSleep(int sleepTime) throws CollectorException {
|
||||
log.info("I'm going to sleep for {}ms", sleepTime);
|
||||
try {
|
||||
Thread.sleep(sleepTime);
|
||||
} catch (InterruptedException e) {
|
||||
log.error(e.getMessage(), e);
|
||||
throw new CollectorException(e);
|
||||
}
|
||||
}
|
||||
|
||||
private int obtainRetryAfter(final Map<String, List<String>> headerMap) {
|
||||
for (String key : headerMap.keySet()) {
|
||||
if ((key != null) && key.toLowerCase().equals("retry-after") && (headerMap.get(key).size() > 0)
|
||||
if ((key != null) && key.equalsIgnoreCase(HttpHeaders.RETRY_AFTER) && (headerMap.get(key).size() > 0)
|
||||
&& NumberUtils.isCreatable(headerMap.get(key).get(0))) {
|
||||
return Integer
|
||||
.parseInt(headerMap.get(key).get(0)) + 10;
|
||||
return Integer.parseInt(headerMap.get(key).get(0)) + 10;
|
||||
}
|
||||
}
|
||||
return -1;
|
||||
|
@ -213,44 +204,13 @@ public class HttpConnector2 {
|
|||
|
||||
private String obtainNewLocation(final Map<String, List<String>> headerMap) throws CollectorException {
|
||||
for (String key : headerMap.keySet()) {
|
||||
if ((key != null) && key.toLowerCase().equals("location") && (headerMap.get(key).size() > 0)) {
|
||||
if ((key != null) && key.equalsIgnoreCase(HttpHeaders.LOCATION) && (headerMap.get(key).size() > 0)) {
|
||||
return headerMap.get(key).get(0);
|
||||
}
|
||||
}
|
||||
throw new CollectorException("The requested url has been MOVED, but 'location' param is MISSING");
|
||||
}
|
||||
|
||||
/**
|
||||
* register for https scheme; this is a workaround and not intended for the use in trusted environments
|
||||
*/
|
||||
public void initTrustManager() {
|
||||
final X509TrustManager tm = new X509TrustManager() {
|
||||
|
||||
@Override
|
||||
public void checkClientTrusted(final X509Certificate[] xcs, final String string) {
|
||||
}
|
||||
|
||||
@Override
|
||||
public void checkServerTrusted(final X509Certificate[] xcs, final String string) {
|
||||
}
|
||||
|
||||
@Override
|
||||
public X509Certificate[] getAcceptedIssuers() {
|
||||
return null;
|
||||
}
|
||||
};
|
||||
try {
|
||||
final SSLContext ctx = SSLContext.getInstance("TLS");
|
||||
ctx.init(null, new TrustManager[] {
|
||||
tm
|
||||
}, null);
|
||||
HttpsURLConnection.setDefaultSSLSocketFactory(ctx.getSocketFactory());
|
||||
} catch (GeneralSecurityException e) {
|
||||
log.fatal(e);
|
||||
throw new IllegalStateException(e);
|
||||
}
|
||||
}
|
||||
|
||||
private boolean is2xx(final int statusCode) {
|
||||
return statusCode >= 200 && statusCode <= 299;
|
||||
}
|
||||
|
@ -267,32 +227,15 @@ public class HttpConnector2 {
|
|||
return statusCode >= 500 && statusCode <= 599;
|
||||
}
|
||||
|
||||
public int getMaxNumberOfRetry() {
|
||||
return maxNumberOfRetry;
|
||||
}
|
||||
|
||||
public void setMaxNumberOfRetry(final int maxNumberOfRetry) {
|
||||
this.maxNumberOfRetry = maxNumberOfRetry;
|
||||
}
|
||||
|
||||
public int getDefaultDelay() {
|
||||
return defaultDelay;
|
||||
}
|
||||
|
||||
public void setDefaultDelay(final int defaultDelay) {
|
||||
this.defaultDelay = defaultDelay;
|
||||
}
|
||||
|
||||
public int getReadTimeOut() {
|
||||
return readTimeOut;
|
||||
}
|
||||
|
||||
public void setReadTimeOut(final int readTimeOut) {
|
||||
this.readTimeOut = readTimeOut;
|
||||
}
|
||||
|
||||
public String getResponseType() {
|
||||
return responseType;
|
||||
}
|
||||
|
||||
public HttpClientParams getClientParams() {
|
||||
return clientParams;
|
||||
}
|
||||
|
||||
public void setClientParams(HttpClientParams clientParams) {
|
||||
this.clientParams = clientParams;
|
||||
}
|
||||
}
|
||||
|
|
|
@ -0,0 +1,32 @@
|
|||
|
||||
package eu.dnetlib.dhp.collection.worker.utils;
|
||||
|
||||
public class UnknownCollectorPluginException extends Exception {
|
||||
|
||||
/** */
|
||||
private static final long serialVersionUID = -290723075076039757L;
|
||||
|
||||
public UnknownCollectorPluginException() {
|
||||
super();
|
||||
}
|
||||
|
||||
public UnknownCollectorPluginException(
|
||||
final String message,
|
||||
final Throwable cause,
|
||||
final boolean enableSuppression,
|
||||
final boolean writableStackTrace) {
|
||||
super(message, cause, enableSuppression, writableStackTrace);
|
||||
}
|
||||
|
||||
public UnknownCollectorPluginException(final String message, final Throwable cause) {
|
||||
super(message, cause);
|
||||
}
|
||||
|
||||
public UnknownCollectorPluginException(final String message) {
|
||||
super(message);
|
||||
}
|
||||
|
||||
public UnknownCollectorPluginException(final Throwable cause) {
|
||||
super(cause);
|
||||
}
|
||||
}
|
|
@ -105,7 +105,8 @@ public class TransformSparkJobNode {
|
|||
log.info("Total item " + ct.getTotalItems().count());
|
||||
log.info("Transformation Error item " + ct.getErrorItems().count());
|
||||
|
||||
writeTotalSizeOnHDFS(spark, mdstore.count(), outputBasePath + MDSTORE_SIZE_PATH);
|
||||
writeHdfsFile(
|
||||
spark.sparkContext().hadoopConfiguration(), "" + mdstore.count(), outputBasePath + MDSTORE_SIZE_PATH);
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -0,0 +1,14 @@
|
|||
[
|
||||
{
|
||||
"paramName": "n",
|
||||
"paramLongName": "namenode",
|
||||
"paramDescription": "the Name Node URI",
|
||||
"paramRequired": true
|
||||
},
|
||||
{
|
||||
"paramName": "mv",
|
||||
"paramLongName": "mdStoreVersion",
|
||||
"paramDescription": "the MDStore Version bean",
|
||||
"paramRequired": true
|
||||
}
|
||||
]
|
|
@ -23,12 +23,34 @@
|
|||
"paramDescription": "the End point URL to send Messages",
|
||||
"paramRequired": true
|
||||
},
|
||||
|
||||
|
||||
{
|
||||
"paramName": "w",
|
||||
"paramLongName": "workflowId",
|
||||
"paramDescription": "the identifier of the dnet Workflow",
|
||||
"paramRequired": true
|
||||
},
|
||||
{
|
||||
"paramName": "mr",
|
||||
"paramLongName": "maxNumberOfRetry",
|
||||
"paramDescription": "the maximum number of admitted connection retries",
|
||||
"paramRequired": false
|
||||
},
|
||||
{
|
||||
"paramName": "rd",
|
||||
"paramLongName": "retryDelay",
|
||||
"paramDescription": "the delay (ms) between retries",
|
||||
"paramRequired": false
|
||||
},
|
||||
{
|
||||
"paramName": "ct",
|
||||
"paramLongName": "connectTimeOut",
|
||||
"paramDescription": "the maximum allowed time (ms) to connect to the remote host",
|
||||
"paramRequired": false
|
||||
},
|
||||
{
|
||||
"paramName": "rt",
|
||||
"paramLongName": "readTimeOut",
|
||||
"paramDescription": "the maximum allowed time (ms) to receive content from the remote host",
|
||||
"paramRequired": false
|
||||
}
|
||||
]
|
|
@ -94,9 +94,22 @@
|
|||
<arg>--workflowId</arg><arg>${workflowId}</arg>
|
||||
<arg>--dnetMessageManagerURL</arg><arg>${dnetMessageManagerURL}</arg>
|
||||
<arg>--mdStoreVersion</arg><arg>${wf:actionData('StartTransaction')['mdStoreVersion']}</arg>
|
||||
|
||||
<arg>--maxNumberOfRetry</arg><arg>${maxNumberOfRetry}</arg>
|
||||
<arg>--retryDelay</arg><arg>${retryDelay}</arg>
|
||||
<arg>--connectTimeOut</arg><arg>${connectTimeOut}</arg>
|
||||
<arg>--readTimeOut</arg><arg>${readTimeOut}</arg>
|
||||
<capture-output/>
|
||||
</java>
|
||||
<ok to="CollectorReport"/>
|
||||
<error to="CollectorReport"/>
|
||||
</action>
|
||||
|
||||
<action name="CollectorReport">
|
||||
<java>
|
||||
<main-class>eu.dnetlib.dhp.collection.worker.CollectorWorkerReporter</main-class>
|
||||
<arg>--mdStoreVersion</arg><arg>${wf:actionData('StartTransaction')['mdStoreVersion']}</arg>
|
||||
<arg>--namenode</arg><arg>${nameNode}</arg>
|
||||
</java>
|
||||
<ok to="GenerateNativeStoreSparkJob"/>
|
||||
<error to="FailCollection"/>
|
||||
</action>
|
||||
|
|
|
@ -1,44 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.actionmanager.project.httpconnector;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
import org.apache.http.conn.ssl.SSLConnectionSocketFactory;
|
||||
import org.apache.http.ssl.SSLContextBuilder;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.Disabled;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import eu.dnetlib.dhp.collection.worker.CollectorException;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.HttpConnector2;
|
||||
|
||||
@Disabled
|
||||
public class HttpConnectorTest {
|
||||
|
||||
private static final Log log = LogFactory.getLog(HttpConnectorTest.class);
|
||||
private static HttpConnector2 connector;
|
||||
|
||||
private static final String URL = "http://cordis.europa.eu/data/reference/cordisref-H2020topics.xlsx";
|
||||
private static final String URL_MISCONFIGURED_SERVER = "https://www.alexandria.unisg.ch/cgi/oai2?verb=Identify";
|
||||
private static final String URL_GOODSNI_SERVER = "https://air.unimi.it/oai/openaire?verb=Identify";
|
||||
|
||||
private static final SSLContextBuilder sslContextBuilder = new SSLContextBuilder();
|
||||
private static SSLConnectionSocketFactory sslSocketFactory;
|
||||
|
||||
@BeforeAll
|
||||
public static void setUp() {
|
||||
connector = new HttpConnector2();
|
||||
}
|
||||
|
||||
@Test
|
||||
|
||||
public void testGetInputSource() throws CollectorException {
|
||||
System.out.println(connector.getInputSource(URL));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testGoodServers() throws CollectorException {
|
||||
System.out.println(connector.getInputSource(URL_GOODSNI_SERVER));
|
||||
}
|
||||
|
||||
}
|
|
@ -13,6 +13,7 @@ import com.fasterxml.jackson.databind.ObjectMapper;
|
|||
|
||||
import eu.dnetlib.dhp.collection.worker.CollectorWorker;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginFactory;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.HttpClientParams;
|
||||
import eu.dnetlib.dhp.collector.worker.model.ApiDescriptor;
|
||||
|
||||
@Disabled
|
||||
|
@ -21,8 +22,9 @@ public class CollectorWorkerApplicationTests {
|
|||
@Test
|
||||
public void testFindPlugin() throws Exception {
|
||||
final CollectorPluginFactory collectorPluginEnumerator = new CollectorPluginFactory();
|
||||
assertNotNull(collectorPluginEnumerator.getPluginByProtocol("oai"));
|
||||
assertNotNull(collectorPluginEnumerator.getPluginByProtocol("OAI"));
|
||||
final HttpClientParams clientParams = new HttpClientParams();
|
||||
assertNotNull(collectorPluginEnumerator.getPluginByProtocol(clientParams, "oai"));
|
||||
assertNotNull(collectorPluginEnumerator.getPluginByProtocol(clientParams, "OAI"));
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
|
@ -0,0 +1,29 @@
|
|||
|
||||
package eu.dnetlib.dhp.collector.worker.utils;
|
||||
|
||||
import java.io.IOException;
|
||||
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import eu.dnetlib.dhp.aggregation.common.AggregationUtility;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.CollectorPluginReport;
|
||||
|
||||
public class CollectorPluginReportTest {
|
||||
|
||||
@Test
|
||||
public void testSerialize() throws IOException {
|
||||
CollectorPluginReport r1 = new CollectorPluginReport();
|
||||
r1.put("a", "b");
|
||||
r1.setSuccess(true);
|
||||
|
||||
String s = AggregationUtility.MAPPER.writeValueAsString(r1);
|
||||
|
||||
Assertions.assertNotNull(s);
|
||||
|
||||
CollectorPluginReport r2 = AggregationUtility.MAPPER.readValue(s, CollectorPluginReport.class);
|
||||
|
||||
Assertions.assertTrue(r2.isSuccess(), "should be true");
|
||||
}
|
||||
|
||||
}
|
Loading…
Reference in New Issue