From a203c33693a8589e9d1254d57fcfcea637c15bdb Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Wed, 6 Apr 2022 12:48:24 +0200
Subject: [PATCH] added disprot constants configuration

---
 .../bioschema/BioschemaModelConstants.scala   | 18 +++++---
 .../dnetlib/dhp/bioschema/disprot_record.json | 45 +++++++++++++++++++
 .../BioschemaDataciteToOAFTest.scala          | 15 ++++++-
 3 files changed, 72 insertions(+), 6 deletions(-)
 create mode 100644 dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/disprot_record.json

diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaModelConstants.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaModelConstants.scala
index ce56305f5..729aa0ec0 100644
--- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaModelConstants.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaModelConstants.scala
@@ -74,28 +74,36 @@ object BioschemaModelConstants {
   )
 
   val PED_PREFIX: String = "ped_________"
+  val DISPROT_PREFIX: String = "disprot_____"
 
   val resolvedURLPattern: Map[String, String] = Map(
     "https://identifiers.org/pubmed:"  -> "pubmed",
     "http://purl.uniprot.org/uniprot/" -> "uniprot",
-    "https://identifiers.org/uniprot:" -> "uniprot"
+    "https://identifiers.org/uniprot:" -> "uniprot",
+    "https://identifiers.org/disprot:" -> "disprot"
   )
-
+  //TODO create DatasourceId and update those value
   val collectedFromMap: Map[String, KeyValue] = {
     val PEDCollectedFrom: KeyValue = OafMapperUtils.keyValue(
-      //TODO create pedDatasourceId and update this value
       "10|ped_________::pedDatasourceId",
       "Protein Ensemble Database"
     )
     PEDCollectedFrom.setDataInfo(DATA_INFO)
+    val DISPROTCollectedFrom: KeyValue = OafMapperUtils.keyValue(
+      "10|disprot_____::disprotDatasourceId",
+      "DisProt, the database of intrinsically disordered proteins"
+    )
+    DISPROTCollectedFrom.setDataInfo(DATA_INFO)
 
     Map(
-      "ped" -> PEDCollectedFrom
+      "ped" -> PEDCollectedFrom,
+      "disprot" -> DISPROTCollectedFrom
     )
   }
 
   val datasourceKeyPrefix: Map[String, String] = Map(
-    "ped" -> PED_PREFIX
+    "ped" -> PED_PREFIX,
+    "disprot" -> DISPROT_PREFIX
   )
 
   val REL_TYPE_VALUE: String = "resultResult"
diff --git a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/disprot_record.json b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/disprot_record.json
new file mode 100644
index 000000000..3689d65be
--- /dev/null
+++ b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/disprot_record.json
@@ -0,0 +1,45 @@
+{
+  "id": "DP01454",
+  "types": {
+    "resourceType": "Protein",
+    "resourceTypeGeneral": "Dataset"
+  },
+  "creators": [],
+  "identifiers": [
+    {
+      "identifier": "https://disprot.org/DP01454",
+      "identifierType": "URL"
+    }
+  ],
+  "relatedIdentifiers": [
+    {
+      "relationType": "IsIdenticalTo",
+      "relatedIdentifier": "http://purl.uniprot.org/uniprot/P60006",
+      "relatedIdentifierType": "URL"
+    }
+  ],
+  "alternateIdentifiers": [
+    {
+      "alternateIdentifier": "https://identifiers.org/disprot:DP01454"
+    }
+  ],
+  "descriptions": [],
+  "titles": [
+    {
+      "title": "DP01454 -  Anaphase-promoting complex subunit 15 "
+    }
+  ],
+  "dates": [
+    {
+      "date": "2021-11-25T12:23:57",
+      "dateType": "Collected"
+    }
+  ],
+  "subjects": [
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "disorder",
+      "subjectScheme": "IDPO:00076"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/bioschema/BioschemaDataciteToOAFTest.scala b/dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/bioschema/BioschemaDataciteToOAFTest.scala
index 07647a0d7..7ffe10c2c 100644
--- a/dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/bioschema/BioschemaDataciteToOAFTest.scala
+++ b/dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/bioschema/BioschemaDataciteToOAFTest.scala
@@ -62,7 +62,7 @@ class BioschemaDataciteToOAFTest {
   }
 
   @Test
-  def testMapping(): Unit = {
+  def testPEDMapping(): Unit = {
     val record = Source
       .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/bioschema/ped_record.json"))
       .mkString
@@ -73,4 +73,17 @@ class BioschemaDataciteToOAFTest {
       println("----------------------------")
     })
   }
+
+  @Test
+  def testDISPROTMapping(): Unit = {
+    val record = Source
+      .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/bioschema/disprot_record.json"))
+      .mkString
+    val mapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
+    val res: List[Oaf] = BioschemaToOAFTransformation.generateOAF(record, true, "disprot", "protein")
+    res.foreach(r => {
+      println(mapper.writeValueAsString(r))
+      println("----------------------------")
+    })
+  }
 }