forked from D-Net/dnet-hadoop
add author sequence number
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@ -12,6 +12,7 @@ public class Author implements Serializable {
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private String surname;
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// START WITH 1
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private Integer rank;
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private List<StructuredProperty> pid;
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@ -21,7 +21,7 @@ case class CrossrefDT(doi: String, json:String, timestamp: Long) {}
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case class mappingAffiliation(name: String) {}
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case class mappingAuthor(given: Option[String], family: String, ORCID: Option[String], affiliation: Option[mappingAffiliation]) {}
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case class mappingAuthor(given: Option[String], family: String, sequence:Option[String], ORCID: Option[String], affiliation: Option[mappingAffiliation]) {}
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case class mappingFunder(name: String, DOI: Option[String], award: Option[List[String]]) {}
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@ -162,7 +162,12 @@ case object Crossref2Oaf {
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//Mapping Author
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val authorList: List[mappingAuthor] = (json \ "author").extractOrElse[List[mappingAuthor]](List())
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result.setAuthor(authorList.map(a => generateAuhtor(a.given.orNull, a.family, a.ORCID.orNull)).asJava)
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val sorted_list = authorList.sortWith((a:mappingAuthor, b:mappingAuthor) => a.sequence.isDefined && a.sequence.get.equalsIgnoreCase("first"))
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result.setAuthor(sorted_list.zipWithIndex.map{case (a, index) => generateAuhtor(a.given.orNull, a.family, a.ORCID.orNull, index)}.asJava)
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// Mapping instance
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val instance = new Instance()
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@ -205,11 +210,12 @@ case object Crossref2Oaf {
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}
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def generateAuhtor(given: String, family: String, orcid: String): Author = {
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def generateAuhtor(given: String, family: String, orcid: String, index:Int): Author = {
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val a = new Author
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a.setName(given)
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a.setSurname(family)
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a.setFullname(s"$given $family")
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a.setRank(index+1)
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if (StringUtils.isNotBlank(orcid))
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a.setPid(List(createSP(orcid, ORCID_PENDING, PID_TYPES, generateDataInfo())).asJava)
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@ -32,11 +32,11 @@ case class MagAffiliation(AffiliationId: Long, Rank: Int, NormalizedName: String
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case class MagPaperAuthorAffiliation(PaperId: Long, AuthorId: Long, AffiliationId: Option[Long], AuthorSequenceNumber: Int, OriginalAuthor: String, OriginalAffiliation: String) {}
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case class MagAuthorAffiliation(author: MagAuthor, affiliation:String)
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case class MagAuthorAffiliation(author: MagAuthor, affiliation:String, sequenceNumber:Int)
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case class MagPaperWithAuthorList(PaperId: Long, authors: List[MagAuthorAffiliation]) {}
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case class MagPaperAuthorDenormalized(PaperId: Long, author: MagAuthor, affiliation:String) {}
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case class MagPaperAuthorDenormalized(PaperId: Long, author: MagAuthor, affiliation:String, sequenceNumber:Int) {}
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case class MagPaperUrl(PaperId: Long, SourceType: Option[Int], SourceUrl: Option[String], LanguageCode: Option[String]) {}
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@ -209,9 +209,9 @@ case object ConversionUtil {
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val authorsOAF = authors.authors.map { f: MagAuthorAffiliation =>
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val a: eu.dnetlib.dhp.schema.oaf.Author = new eu.dnetlib.dhp.schema.oaf.Author
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a.setFullname(f.author.DisplayName.get)
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a.setRank(f.sequenceNumber)
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if (f.author.DisplayName.isDefined)
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a.setFullname(f.author.DisplayName.get)
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if(f.affiliation!= null)
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a.setAffiliation(List(asField(f.affiliation)).asJava)
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a.setPid(List(createSP(s"https://academic.microsoft.com/#/detail/${f.author.AuthorId}", "URL", PID_TYPES)).asJava)
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@ -58,13 +58,13 @@ object SparkProcessMAG {
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val paperAuthorAffiliation = spark.read.load(s"$sourcePath/PaperAuthorAffiliations").as[MagPaperAuthorAffiliation]
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paperAuthorAffiliation.joinWith(authors, paperAuthorAffiliation("AuthorId").equalTo(authors("AuthorId")))
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.map { case (a: MagPaperAuthorAffiliation, b: MagAuthor) => (a.AffiliationId, MagPaperAuthorDenormalized(a.PaperId, b, null)) }
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.map { case (a: MagPaperAuthorAffiliation, b: MagAuthor) => (a.AffiliationId, MagPaperAuthorDenormalized(a.PaperId, b, null, a.AuthorSequenceNumber)) }
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.joinWith(affiliation, affiliation("AffiliationId").equalTo(col("_1")), "left")
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.map(s => {
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val mpa = s._1._2
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val af = s._2
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if (af != null) {
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MagPaperAuthorDenormalized(mpa.PaperId, mpa.author, af.DisplayName)
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MagPaperAuthorDenormalized(mpa.PaperId, mpa.author, af.DisplayName, mpa.sequenceNumber)
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} else
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mpa
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}).groupBy("PaperId").agg(collect_list(struct($"author", $"affiliation")).as("authors"))
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@ -12,14 +12,6 @@
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"abstract": "<jats:p>A qualitative spot-test and tandem quantitative analysis of dipyrone in the bulk drugand in pharmaceutical preparations is proposed. The formation of a reddish-violet\u00a0 color indicates a positive result. In sequence a quantitative procedure can be performed in the same flask. The quantitative results obtained were statistically compared with those obtained with the method indicated by the Brazilian\u00a0 Pharmacopoeia, using the Student\u2019s t and the F tests. Considering the concentration in a 100 \u03bcL aliquot, the qualitative visual limit of detection is about 5\u00d710-6 g; instrumental LOD \u2245 1.4\u00d710-4 mol L-1 ; LOQ \u2245 4.5\u00d710-4 mol L-1.</jats:p>",
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"prefix": "10.26850",
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"author": [
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{
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"authenticated-orcid": false,
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"given": "Matthieu",
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"family": "Tubino",
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"sequence": "first",
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"affiliation": [],
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"ORCID": "http://orcid.org/0000-0002-1987-3907"
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},
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{
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"affiliation": [],
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"given": "A. C.",
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@ -49,6 +41,14 @@
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"sequence": "additional",
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"affiliation": [],
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"ORCID": "http://orcid.org/0000-0001-5564-1639"
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},
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{
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"authenticated-orcid": false,
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"given": "Matthieu",
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"family": "Tubino",
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"sequence": "first",
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"affiliation": [],
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"ORCID": "http://orcid.org/0000-0002-1987-3907"
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}
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],
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"reference-count": 0,
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