Merge pull request 'updates on stats-update workflow' (#100) from antonis.lempesis/dnet-hadoop:master into master

The workflow integrated in the _stable_ids_ branch has been run correctly on the BETA content, thus IMO this PR can be integrated in the master branch.

Reviewed-on: D-Net/dnet-hadoop#100

dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/impala-shell.sh

@@ -1,18 +0,0 @@
-export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
-export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
-if ! [ -L $link_folder ]
-then
-    rm -Rf "$link_folder"
-    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
-fi
-
-echo "Getting file from " $3
-hdfs dfs -copyToLocal $3
-
-echo "Running impala shell make the new database visible"
-impala-shell -q "INVALIDATE METADATA;"
-
-echo "Running impala shell to compute new table stats"
-impala-shell -d $1 -f $2
-echo "Impala shell finished"
-rm $2

dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/computeProductionStats.sql

@@ -1,8 +0,0 @@
-------------------------------------------------------
-------------------------------------------------------
--- Impala table statistics - Needed to make the tables
--- visible for impala
-------------------------------------------------------
-------------------------------------------------------
-
-INVALIDATE METADATA ${stats_db_name};

dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/updateProductionViews.sql

@@ -1,207 +0,0 @@
-------------------------------------------------------
-------------------------------------------------------
--- Shadow schema table exchange
-------------------------------------------------------
-------------------------------------------------------
-
--- Dropping old views
-DROP VIEW IF EXISTS ${stats_db_production_name}.category;
-DROP VIEW IF EXISTS ${stats_db_production_name}.concept;
-DROP VIEW IF EXISTS ${stats_db_production_name}.context;
-DROP VIEW IF EXISTS ${stats_db_production_name}.country;
-DROP VIEW IF EXISTS ${stats_db_production_name}.countrygdp;
-DROP VIEW IF EXISTS ${stats_db_production_name}.creation_date;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_citations;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_classifications;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_concepts;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_datasources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_languages;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_licenses;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_oids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_pids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_refereed;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_sources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.dataset_topics;
-DROP VIEW IF EXISTS ${stats_db_production_name}.datasource;
-DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_languages;
-DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_oids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_organizations;
-DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_results;
-DROP VIEW IF EXISTS ${stats_db_production_name}.datasource_sources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.funder;
-DROP VIEW IF EXISTS ${stats_db_production_name}.fundref;
-DROP VIEW IF EXISTS ${stats_db_production_name}.numbers_country;
-DROP VIEW IF EXISTS ${stats_db_production_name}.organization;
-DROP VIEW IF EXISTS ${stats_db_production_name}.organization_datasources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.organization_pids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.organization_projects;
-DROP VIEW IF EXISTS ${stats_db_production_name}.organization_sources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_citations;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_classifications;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_concepts;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_datasources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_languages;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_licenses;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_oids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_pids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_refereed;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_sources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.otherresearchproduct_topics;
-DROP VIEW IF EXISTS ${stats_db_production_name}.project;
-DROP VIEW IF EXISTS ${stats_db_production_name}.project_oids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.project_organizations;
-DROP VIEW IF EXISTS ${stats_db_production_name}.project_results;
-DROP VIEW IF EXISTS ${stats_db_production_name}.project_resultcount;
-DROP VIEW IF EXISTS ${stats_db_production_name}.project_results_publication;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_citations;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_classifications;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_concepts;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_datasources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_languages;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_licenses;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_oids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_pids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_refereed;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_sources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.publication_topics;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_affiliated_country;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_citations;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_classifications;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_concepts;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_datasources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_deposited_country;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_fundercount;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_gold;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_greenoa;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_languages;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_licenses;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_oids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_organization;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_peerreviewed;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_pids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_projectcount;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_projects;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_refereed;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_sources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.result_topics;
-DROP VIEW IF EXISTS ${stats_db_production_name}.rndexpediture;
-DROP VIEW IF EXISTS ${stats_db_production_name}.roarmap;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_citations;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_classifications;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_concepts;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_datasources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_languages;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_licenses;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_oids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_pids;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_refereed;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_sources;
-DROP VIEW IF EXISTS ${stats_db_production_name}.software_topics;
-
-
--- Creating the shadow database, in case it doesn't exist
-CREATE database IF NOT EXISTS ${stats_db_production_name};
-
--- Creating new views
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.category AS SELECT * FROM ${stats_db_name}.category;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.context AS SELECT * FROM ${stats_db_name}.context;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.country AS SELECT * FROM ${stats_db_name}.country;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project AS SELECT * FROM ${stats_db_name}.project;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result AS SELECT * FROM ${stats_db_name}.result;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software AS SELECT * FROM ${stats_db_name}.software;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_production_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;

dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateProductionViews.sh

@@ -0,0 +1,16 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+export SOURCE=$1
+export PRODUCTION=$2
+
+echo "Updating ${PRODUCTION} database"
+impala-shell -q "create database if not exists ${PRODUCTION}"
+impala-shell -d ${PRODUCTION} -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}./" | sed "s/$/;/" | impala-shell -c -f -
+impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f -
+echo "Production db ready!"

dhp-workflows/dhp-stats-promote/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml

@@ -6,7 +6,15 @@
         </property>
         <property>
             <name>stats_db_production_name</name>
-            <description>the name of the production schema</description>
+            <description>the name of the public production schema</description>
+        </property>
+        <property>
+            <name>monitor_db_name</name>
+            <description>the monitor database name</description>
+        </property>
+        <property>
+            <name>monitor_db_production_name</name>
+            <description>the name of the monitor public database</description>
         </property>
         <property>
             <name>stats_tool_api_url</name>
@@ -48,25 +56,26 @@
     </kill>
 
     <action name="updateProductionViews">
-        <hive2 xmlns="uri:oozie:hive2-action:0.1">
-            <jdbc-url>${hive_jdbc_url}</jdbc-url>
-            <script>scripts/updateProductionViews.sql</script>
-			<param>stats_db_name=${stats_db_name}</param>
-			<param>stats_db_production_name=${stats_db_production_name}</param>
-        </hive2>
-        <ok to="computeProductionStats"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="computeProductionStats">
         <shell xmlns="uri:oozie:shell-action:0.1">
             <job-tracker>${jobTracker}</job-tracker>
             <name-node>${nameNode}</name-node>
-            <exec>impala-shell.sh</exec>
+            <exec>updateProductionViews.sh</exec>
+            <argument>${stats_db_name}</argument>
             <argument>${stats_db_production_name}</argument>
-            <argument>computeProductionStats.sql</argument>
+            <file>updateProductionViews.sh</file>
-            <argument>${wf:appPath()}/scripts/computeProductionStats.sql</argument>
+        </shell>
-            <file>impala-shell.sh</file>
+        <ok to="updateMonitorViews"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="updateMonitorViews">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>updateProductionViews.sh</exec>
+            <argument>${monitor_db_name}</argument>
+            <argument>${monitor_db_production_name}</argument>
+            <file>updateProductionViews.sh</file>
         </shell>
         <ok to="promoteCache"/>
         <error to="Kill"/>

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh

@@ -0,0 +1,43 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+CONTEXT_API=$1
+TARGET_DB=$2
+
+TMP=/tmp/stats-update-`tr -dc A-Za-z0-9 </dev/urandom | head -c 6`
+
+echo "Downloading context data"
+curl -L ${CONTEXT_API}/contexts?all=true -H "accept: application/json" | /usr/local/sbin/jq -r '.[] | "\(.id),\(.label)"' > contexts.csv
+cat contexts.csv | cut -d , -f1 | xargs -I {} curl -L ${CONTEXT_API}/context/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split(":")[0]),\(.id),\(.label)"' > categories.csv
+cat categories.csv | cut -d , -f2 | sed 's/:/%3A/g'| xargs -I {} curl -L ${CONTEXT_API}/context/category/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split("::")[0])::\(.id|split("::")[1]),\(.id),\(.label)"' > concepts.csv
+cat contexts.csv | sed 's/^\(.*\),\(.*\)/\1,\1::other,\2/' >> categories.csv
+cat categories.csv | grep -v ::other | sed 's/^.*,\(.*\),\(.*\)/\1,\1::other,\2/' >> concepts.csv
+
+echo "uploading context data to hdfs"
+hdfs dfs -mkdir ${TMP}
+hdfs dfs -copyFromLocal contexts.csv ${TMP}
+hdfs dfs -copyFromLocal categories.csv ${TMP}
+hdfs dfs -copyFromLocal concepts.csv ${TMP}
+hdfs dfs -chmod -R 777 ${TMP}
+
+echo "Creating and populating impala tables"
+impala-shell -q "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','"
+impala-shell -q "create table ${TARGET_DB}.category (context string, id string, name string) row format delimited fields terminated by ','"
+impala-shell -q "create table ${TARGET_DB}.concept (category string, id string, name string) row format delimited fields terminated by ','"
+impala-shell -d ${TARGET_DB} -q "invalidate metadata"
+impala-shell -q "load data inpath '${TMP}/contexts.csv' into table ${TARGET_DB}.context"
+impala-shell -q "load data inpath '${TMP}/categories.csv' into table ${TARGET_DB}.category"
+impala-shell -q "load data inpath '${TMP}/concepts.csv' into table ${TARGET_DB}.concept"
+
+echo "Cleaning up"
+hdfs dfs -rm -f -r -skipTrash ${TMP}
+rm concepts.csv
+rm categories.csv
+rm contexts.csv
+
+echo "Finito!"

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql

@@ -23,19 +23,6 @@ CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS
 SELECT *
 FROM ${external_stats_db_name}.rndexpediture;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.context AS
-SELECT *
-FROM ${external_stats_db_name}.context;
-
-CREATE OR REPLACE VIEW ${stats_db_name}.category AS
-SELECT *
-FROM ${external_stats_db_name}.category;
-
-CREATE OR REPLACE VIEW ${stats_db_name}.concept AS
-SELECT *
-FROM ${external_stats_db_name}.concept;
-
-
 ------------------------------------------------------------------------------------------------
 ------------------------------------------------------------------------------------------------
 -- Creation date of the database

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql

@@ -47,7 +47,10 @@ from ${openaire_db_name}.publication p
 where p.datainfo.deletedbyinference = false;
 
 CREATE TABLE ${stats_db_name}.publication_concepts AS
-SELECT substr(p.id, 4) as id, contexts.context.id as concept
+SELECT substr(p.id, 4) as id, case
+    when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
+    when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
+    when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
 from ${openaire_db_name}.publication p
          LATERAL VIEW explode(p.context) contexts as context
 where p.datainfo.deletedbyinference = false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql

@@ -54,7 +54,10 @@ FROM ${openaire_db_name}.dataset p
 where p.datainfo.deletedbyinference = false;
 
 CREATE TABLE ${stats_db_name}.dataset_concepts AS
-SELECT substr(p.id, 4) as id, contexts.context.id as concept
+SELECT substr(p.id, 4) as id, case
+                                  when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
+                                  when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
+                                  when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
 from ${openaire_db_name}.dataset p
          LATERAL VIEW explode(p.context) contexts as context
 where p.datainfo.deletedbyinference = false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql

@@ -54,7 +54,10 @@ FROM ${openaire_db_name}.software p
 where p.datainfo.deletedbyinference = false;
 
 CREATE TABLE ${stats_db_name}.software_concepts AS
-SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
+SELECT substr(p.id, 4) as id, case
+                                  when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
+                                  when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
+                                  when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
 FROM ${openaire_db_name}.software p
          LATERAL VIEW explode(p.context) contexts AS context
 where p.datainfo.deletedbyinference = false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql

@@ -52,7 +52,10 @@ FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.
 where p.datainfo.deletedbyinference = false;
 
 CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS
-SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
+SELECT substr(p.id, 4) as id, case
+                                  when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
+                                  when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
+                                  when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
 FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context
 where p.datainfo.deletedbyinference = false;
 

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml

@@ -41,6 +41,10 @@
             <name>hive_timeout</name>
             <description>the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds.</description>
         </property>
+        <property>
+            <name>context_api_url</name>
+            <description>the base url of the context api (https://services.openaire.eu/openaire)</description>
+        </property>
     </parameters>
 
     <global>
@@ -260,6 +264,19 @@
             <param>stats_db_name=${stats_db_name}</param>
             <param>openaire_db_name=${openaire_db_name}</param>
         </hive2>
+        <ok to="Step17"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Step17">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>contexts.sh</exec>
+            <argument>${context_api_url}</argument>
+            <argument>${stats_db_name}</argument>
+            <file>contexts.sh</file>
+        </shell>
         <ok to="Step19"/>
         <error to="Kill"/>
     </action>