From 2bc79c50f8a64858e2d093163bb5c05dfa00803b Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Tue, 22 Feb 2022 11:46:29 +0100
Subject: [PATCH] mapping bioschema to oaf

---
 .../BioschemaToOAFTransformation.scala        | 36 +++++++++----------
 1 file changed, 18 insertions(+), 18 deletions(-)

diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaToOAFTransformation.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaToOAFTransformation.scala
index 3461b9198..88fd70107 100644
--- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaToOAFTransformation.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaToOAFTransformation.scala
@@ -42,7 +42,7 @@ object BioschemaToOAFTransformation {
     PEDCollectedFrom.setDataInfo(DATA_INFO)
 
     Map(
-      "ped"                         -> PEDCollectedFrom
+      "ped" -> PEDCollectedFrom
     )
   }
 
@@ -362,11 +362,11 @@ object BioschemaToOAFTransformation {
       result.setDateofacceptance(OafMapperUtils.field(i_date.get.get, null))
       result.getInstance().get(0).setDateofacceptance(OafMapperUtils.field(i_date.get.get, null))
     } else if (publication_year != null) {
-        result.setDateofacceptance(OafMapperUtils.field(s"01-01-$publication_year", null))
-        result
-          .getInstance()
-          .get(0)
-          .setDateofacceptance(OafMapperUtils.field(s"01-01-$publication_year", null))
+      result.setDateofacceptance(OafMapperUtils.field(s"01-01-$publication_year", null))
+      result
+        .getInstance()
+        .get(0)
+        .setDateofacceptance(OafMapperUtils.field(s"01-01-$publication_year", null))
     }
 
     result.setRelevantdate(
@@ -439,18 +439,18 @@ object BioschemaToOAFTransformation {
           ModelConstants.DNET_ACCESS_MODES
         )
 
-      instance.setCollectedfrom(collectedFromMap("ped"))
-      instance.setUrl(List(s"https://proteinensemble.org/$pid").asJava)
-      instance.setAccessright(access_rights_qualifier)
-      instance.setPid(result.getPid)
-      val license = accessRights
-        .find(r =>
-          r.startsWith("http") && r.matches(
-            ".*(/licenses|/publicdomain|unlicense\\.org/|/legal-and-data-protection-notices|/download/license|/open-government-licence).*"
-          )
+    instance.setCollectedfrom(collectedFromMap("ped"))
+    instance.setUrl(List(s"https://proteinensemble.org/$pid").asJava)
+    instance.setAccessright(access_rights_qualifier)
+    instance.setPid(result.getPid)
+    val license = accessRights
+      .find(r =>
+        r.startsWith("http") && r.matches(
+          ".*(/licenses|/publicdomain|unlicense\\.org/|/legal-and-data-protection-notices|/download/license|/open-government-licence).*"
         )
-      if (license.isDefined)
-        instance.setLicense(OafMapperUtils.field(license.get, null))
+      )
+    if (license.isDefined)
+      instance.setLicense(OafMapperUtils.field(license.get, null))
 
     val awardUris: List[String] = for {
       JObject(fundingReferences)            <- json \\ "fundingReferences"
@@ -514,7 +514,7 @@ object BioschemaToOAFTransformation {
         rel.setTarget(
           DHPUtils.generateUnresolvedIdentifier(r.relatedIdentifier, r.relatedIdentifierType)
         )
-        rel.setCollectedfrom(List(collectedFromMap("ped") ).asJava)
+        rel.setCollectedfrom(List(collectedFromMap("ped")).asJava)
         rel.getCollectedfrom.asScala.map(c => c.getValue).toList
         rel
       })