forked from D-Net/dnet-hadoop
draft of test and resources
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package eu.dnetlib.dhp.oa.graph.dump.graph;
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package eu.dnetlib.dhp.oa.graph.dump.graph;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.util.HashMap;
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public class RelationFromOrganizationTest {
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public class RelationFromOrganizationTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory
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.getLogger(RelationFromOrganizationTest.class);
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private static HashMap<String, String> map = new HashMap<>();
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(RelationFromOrganizationTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(RelationFromOrganizationTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(RelationFromOrganizationTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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public void test1() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation")
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.getPath();
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SparkOrganizationRelation.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/relation",
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"-sourcePath", sourcePath
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});
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// dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset");
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Relation> tmp = sc
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.textFile(workingDir.toString() + "/relation")
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.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
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org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
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verificationDataset.createOrReplaceTempView("table");
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}
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}
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@ -0,0 +1,6 @@
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{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"decisiontree-dedup-beta","inferred":true,"invisible":false,"provenanceaction":{"classid":"sysimport:dedup","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"properties":[],"relClass":"merges","relType":"organizationOrganization","source":"20|dedup_wf_001::00edd377ceb26454f8d644bd36383d7a","subRelType":"dedup","target":"20|grid________::afaa39865943381c51f76c08725ffa75"}
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{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"decisiontree-dedup-beta","inferred":true,"invisible":false,"provenanceaction":{"classid":"sysimport:dedup","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"properties":[],"relClass":"merges","relType":"organizationOrganization","source":"20|dedup_wf_001::03c3cc44ed5921066438b5acf8bd61d0","subRelType":"dedup","target":"20|grid________::63daa724c27cc3511166414ae10d2860"}
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{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::03cf8c9e4906720a09016208c934a9e0","subRelType":"affiliation","target":"50|doiboost____::6923f21ef86bee98e6f595c0edb0d44d"}
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{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::03d0bfb13075c2310eed228ee5c0b6a0","subRelType":"affiliation","target":"50|dedup_wf_001::8265619189c8708f57a652e97831234d"}
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{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::04164fc20b3138346446a164415de38f","subRelType":"affiliation","target":"50|doiboost____::09de6ea4c1a94458e58c491699f0988c"}
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{"collectedfrom":[{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|dedup_wf_001::04164fc20b3138346446a164415de38f","subRelType":"affiliation","target":"50|doiboost____::6c8d54e446d72efa7a53497a4b505b7c"}
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