enrico.ottonello
/
dnet-hadoop
forked from D-Net/dnet-hadoop
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

refactoring

This commit is contained in:
Michele Artini 2020-06-22 08:51:31 +02:00
parent f9fc64ffaf
commit 16c7a18435
37 changed files with 669 additions and 297 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
dhp-workflows/dhp-broker-events/pom.xml
View File

@ -53,7 +53,7 @@
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-openaire-broker-common</artifactId>
<version>[3.0.2,4.0.0)</version>
<version>[3.0.3,4.0.0)</version>
</dependency>
</dependencies>

6
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/model/EventFactory.java
View File

@ -11,7 +11,7 @@ import org.apache.commons.codec.digest.DigestUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.time.DateUtils;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
public class EventFactory {
@ -49,8 +49,8 @@ public class EventFactory {
private static Map<String, Object> createMapFromResult(final UpdateInfo<?> updateInfo) {
final Map<String, Object> map = new HashMap<>();
final OpenaireBrokerResult source = updateInfo.getSource();
final OpenaireBrokerResult target = updateInfo.getTarget();
final OaBrokerMainEntity source = updateInfo.getSource();
final OaBrokerMainEntity target = updateInfo.getTarget();
map.put("target_datasource_id", target.getCollectedFromId());
map.put("target_datasource_name", target.getCollectedFromName());

141
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsApplication.java
View File

@ -18,27 +18,20 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.model.Event;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.EventFinder;
import eu.dnetlib.dhp.broker.oa.util.EventGroup;
import eu.dnetlib.dhp.broker.oa.util.aggregators.simple.ResultAggregator;
import eu.dnetlib.dhp.broker.oa.util.aggregators.simple.ResultGroup;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.OpenaireBrokerResultAggregator;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDataset;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedProject;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedPublication;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedSoftware;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.OaBrokerMainEntityAggregator;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.Software;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import eu.dnetlib.pace.config.DedupConfig;
@ -48,8 +41,6 @@ public class GenerateEventsApplication {
private static final Logger log = LoggerFactory.getLogger(GenerateEventsApplication.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
@ -86,11 +77,11 @@ public class GenerateEventsApplication {
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
removeOutputDir(spark, eventsPath);
ClusterUtils.removeDir(spark, eventsPath);
// TODO REMOVE THIS
relatedProjects(spark, graphPath)
expandResultsWithRelations(spark, graphPath, Publication.class)
.write()
.mode(SaveMode.Overwrite)
.json(eventsPath);
@ -110,28 +101,25 @@ public class GenerateEventsApplication {
}
private static void removeOutputDir(final SparkSession spark, final String path) {
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
}
private static <SRC extends Result> Dataset<Event> generateEvents(
final SparkSession spark,
final String graphPath,
final Class<SRC> sourceClass,
final DedupConfig dedupConfig) {
final Dataset<OpenaireBrokerResult> results = expandResultsWithRelations(spark, graphPath, sourceClass);
final Dataset<OaBrokerMainEntity> results = expandResultsWithRelations(spark, graphPath, sourceClass);
final Dataset<Relation> mergedRels = readPath(spark, graphPath + "/relation", Relation.class)
final Dataset<Relation> mergedRels = ClusterUtils
.readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS));
final TypedColumn<Tuple2<OpenaireBrokerResult, Relation>, ResultGroup> aggr = new ResultAggregator()
final TypedColumn<Tuple2<OaBrokerMainEntity, Relation>, ResultGroup> aggr = new ResultAggregator()
.toColumn();
return results
.joinWith(mergedRels, results.col("openaireId").equalTo(mergedRels.col("source")), "inner")
.groupByKey(
(MapFunction<Tuple2<OpenaireBrokerResult, Relation>, String>) t -> t._2.getTarget(), Encoders.STRING())
(MapFunction<Tuple2<OaBrokerMainEntity, Relation>, String>) t -> t._2.getTarget(), Encoders.STRING())
.agg(aggr)
.map((MapFunction<Tuple2<String, ResultGroup>, ResultGroup>) t -> t._2, Encoders.bean(ResultGroup.class))
.filter(rg -> rg.getData().size() > 1)
@ -141,7 +129,7 @@ public class GenerateEventsApplication {
.flatMap(group -> group.getData().iterator(), Encoders.bean(Event.class));
}
private static <SRC extends Result> Dataset<OpenaireBrokerResult> expandResultsWithRelations(
private static <SRC extends Result> Dataset<OaBrokerMainEntity> expandResultsWithRelations(
final SparkSession spark,
final String graphPath,
final Class<SRC> sourceClass) {
@ -151,116 +139,35 @@ public class GenerateEventsApplication {
// final Dataset<Software> softwares = readPath(spark, graphPath + "/software", Software.class);
// final Dataset<Publication> publications = readPath(spark, graphPath + "/publication", Publication.class);
final Dataset<Relation> rels = readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS))
.cache();
final Dataset<OpenaireBrokerResult> r0 = readPath(
spark, graphPath + "/" + sourceClass.getSimpleName().toLowerCase(), sourceClass)
final Dataset<OaBrokerMainEntity> r0 = ClusterUtils
.readPath(spark, graphPath + "/" + sourceClass.getSimpleName().toLowerCase(), sourceClass)
.filter(r -> r.getDataInfo().getDeletedbyinference())
.map(ConversionUtils::oafResultToBrokerResult, Encoders.bean(OpenaireBrokerResult.class));
.map(ConversionUtils::oafResultToBrokerResult, Encoders.bean(OaBrokerMainEntity.class));
// TODO UNCOMMENT THIS
final Dataset<OpenaireBrokerResult> r1 = join(r0, rels, relatedProjects(spark, graphPath));
// final Dataset<OpenaireBrokerResult> r2 = join(r1, rels, relatedDataset(spark, graphPath));
// final Dataset<OpenaireBrokerResult> r3 = join(r2, rels, relatedPublications(spark, graphPath));
// final Dataset<OpenaireBrokerResult> r4 = join(r3, rels, relatedSoftwares(spark, graphPath));
// final Dataset<OaBrokerMainEntity> r1 = join(r0, relatedProjects(spark, graphPath));
// final Dataset<OaBrokerMainEntity> r2 = join(r1, relatedDataset(spark, graphPath));
// final Dataset<OaBrokerMainEntity> r3 = join(r2, relatedPublications(spark, graphPath));
// final Dataset<OaBrokerMainEntity> r4 = join(r3, relatedSoftwares(spark, graphPath));
return r1; // TODO it should be r4
return r0; // TODO it should be r4
}
private static Dataset<RelatedProject> relatedProjects(final SparkSession spark, final String graphPath) {
final Dataset<Project> projects = readPath(spark, graphPath + "/project", Project.class);
final Dataset<Relation> rels = readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelType().equals(ModelConstants.RESULT_PROJECT));
return rels
.joinWith(projects, projects.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedProject(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafProjectToBrokerProject(t._2)),
Encoders.bean(RelatedProject.class));
}
private static Dataset<RelatedDataset> relatedDataset(final SparkSession spark, final String graphPath) {
final Dataset<eu.dnetlib.dhp.schema.oaf.Dataset> datasets = readPath(
spark, graphPath + "/dataset", eu.dnetlib.dhp.schema.oaf.Dataset.class);
final Dataset<Relation> rels = readPath(spark, graphPath + "/relation", Relation.class);
return rels
.joinWith(datasets, datasets.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedDataset(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafDatasetToBrokerDataset(t._2)),
Encoders.bean(RelatedDataset.class));
}
private static Dataset<RelatedSoftware> relatedSoftwares(final SparkSession spark, final String graphPath) {
final Dataset<Software> softwares = readPath(spark, graphPath + "/software", Software.class);
final Dataset<Relation> rels = readPath(spark, graphPath + "/relation", Relation.class);
return rels
.joinWith(softwares, softwares.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedSoftware(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafSoftwareToBrokerSoftware(t._2)),
Encoders.bean(RelatedSoftware.class));
}
private static Dataset<RelatedPublication> relatedPublications(final SparkSession spark, final String graphPath) {
final Dataset<Publication> pubs = readPath(spark, graphPath + "/publication", Publication.class);
final Dataset<Relation> rels = readPath(spark, graphPath + "/relation", Relation.class);
return rels
.joinWith(pubs, pubs.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedPublication(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafPublicationToBrokerPublication(t._2)),
Encoders.bean(RelatedPublication.class));
}
private static <T> Dataset<OpenaireBrokerResult> join(final Dataset<OpenaireBrokerResult> sources,
final Dataset<Relation> rels,
private static <T> Dataset<OaBrokerMainEntity> join(final Dataset<OaBrokerMainEntity> sources,
final Dataset<T> typedRels) {
final TypedColumn<Tuple2<OpenaireBrokerResult, T>, OpenaireBrokerResult> aggr = new OpenaireBrokerResultAggregator<T>()
final TypedColumn<Tuple2<OaBrokerMainEntity, T>, OaBrokerMainEntity> aggr = new OaBrokerMainEntityAggregator<T>()
.toColumn();
return sources
.joinWith(typedRels, sources.col("openaireId").equalTo(rels.col("source")), "left_outer")
.joinWith(typedRels, sources.col("openaireId").equalTo(typedRels.col("source")), "left_outer")
.groupByKey(
(MapFunction<Tuple2<OpenaireBrokerResult, T>, String>) t -> t._1.getOpenaireId(), Encoders.STRING())
(MapFunction<Tuple2<OaBrokerMainEntity, T>, String>) t -> t._1.getOpenaireId(), Encoders.STRING())
.agg(aggr)
.map(t -> t._2, Encoders.bean(OpenaireBrokerResult.class));
.map(t -> t._2, Encoders.bean(OaBrokerMainEntity.class));
}
public static <R> Dataset<R> readPath(
final SparkSession spark,
final String inputPath,
final Class<R> clazz) {
return spark
.read()
.textFile(inputPath)
.map((MapFunction<String, R>) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz));
}
private static DedupConfig loadDedupConfig(final String isLookupUrl, final String profId) throws Exception {
final ISLookUpService isLookUpService = ISLookupClientFactory.getLookUpService(isLookupUrl);

73
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateRelatedDatasets.java Normal file
View File

@ -0,0 +1,73 @@
package eu.dnetlib.dhp.broker.oa;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDataset;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class GenerateRelatedDatasets {
private static final Logger log = LoggerFactory.getLogger(GenerateRelatedDatasets.class);
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
GenerateRelatedDatasets.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/generate_relations.json")));
parser.parseArgument(args);
final Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String graphPath = parser.get("graphPath");
log.info("graphPath: {}", graphPath);
final String relsPath = parser.get("relsPath");
log.info("relsPath: {}", relsPath);
final SparkConf conf = new SparkConf();
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
ClusterUtils.removeDir(spark, relsPath);
final Dataset<eu.dnetlib.dhp.schema.oaf.Dataset> datasets = ClusterUtils
.readPath(spark, graphPath + "/dataset", eu.dnetlib.dhp.schema.oaf.Dataset.class);
final Dataset<Relation> rels = ClusterUtils.readPath(spark, graphPath + "/relation", Relation.class);
rels
.joinWith(datasets, datasets.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedDataset(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafDatasetToBrokerDataset(t._2)),
Encoders.bean(RelatedDataset.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);
});
}
}

79
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateRelatedProjects.java Normal file
View File

@ -0,0 +1,79 @@
package eu.dnetlib.dhp.broker.oa;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedProject;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class GenerateRelatedProjects {
private static final Logger log = LoggerFactory.getLogger(GenerateRelatedProjects.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
GenerateRelatedProjects.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/generate_relations.json")));
parser.parseArgument(args);
final Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String graphPath = parser.get("graphPath");
log.info("graphPath: {}", graphPath);
final String relsPath = parser.get("relsPath");
log.info("relsPath: {}", relsPath);
final SparkConf conf = new SparkConf();
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
ClusterUtils.removeDir(spark, relsPath);
final Dataset<Project> projects = ClusterUtils.readPath(spark, graphPath + "/project", Project.class);
final Dataset<Relation> rels = ClusterUtils
.readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelType().equals(ModelConstants.RESULT_PROJECT));
rels
.joinWith(projects, projects.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedProject(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafProjectToBrokerProject(t._2)),
Encoders.bean(RelatedProject.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);
});
}
}

78
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateRelatedPublications.java Normal file
View File

@ -0,0 +1,78 @@
package eu.dnetlib.dhp.broker.oa;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedPublication;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class GenerateRelatedPublications {
private static final Logger log = LoggerFactory.getLogger(GenerateRelatedPublications.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
GenerateRelatedPublications.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/generate_relations.json")));
parser.parseArgument(args);
final Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String graphPath = parser.get("graphPath");
log.info("graphPath: {}", graphPath);
final String relsPath = parser.get("relsPath");
log.info("relsPath: {}", relsPath);
final SparkConf conf = new SparkConf();
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
ClusterUtils.removeDir(spark, relsPath);
final Dataset<Publication> pubs = ClusterUtils
.readPath(spark, graphPath + "/publication", Publication.class);
final Dataset<Relation> rels = ClusterUtils.readPath(spark, graphPath + "/relation", Relation.class);
rels
.joinWith(pubs, pubs.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedPublication(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafPublicationToBrokerPublication(t._2)),
Encoders.bean(RelatedPublication.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);
});
}
}

76
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateRelatedSoftwares.java Normal file
View File

@ -0,0 +1,76 @@
package eu.dnetlib.dhp.broker.oa;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedSoftware;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.Software;
public class GenerateRelatedSoftwares {
private static final Logger log = LoggerFactory.getLogger(GenerateRelatedSoftwares.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
GenerateRelatedSoftwares.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/generate_relations.json")));
parser.parseArgument(args);
final Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String graphPath = parser.get("graphPath");
log.info("graphPath: {}", graphPath);
final String relsPath = parser.get("relsPath");
log.info("relsPath: {}", relsPath);
final SparkConf conf = new SparkConf();
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
ClusterUtils.removeDir(spark, relsPath);
final Dataset<Software> softwares = ClusterUtils.readPath(spark, graphPath + "/software", Software.class);
final Dataset<Relation> rels = ClusterUtils.readPath(spark, graphPath + "/relation", Relation.class);
rels
.joinWith(softwares, softwares.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedSoftware(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafSoftwareToBrokerSoftware(t._2)),
Encoders.bean(RelatedSoftware.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);
});
}
}

85
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateSimpleEntitities.java Normal file
View File

@ -0,0 +1,85 @@
package eu.dnetlib.dhp.broker.oa;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Result;
public class GenerateSimpleEntitities {
private static final Logger log = LoggerFactory.getLogger(GenerateSimpleEntitities.class);
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
GenerateSimpleEntitities.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/generate_simple_entities.json")));
parser.parseArgument(args);
final Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String graphPath = parser.get("graphPath");
log.info("graphPath: {}", graphPath);
final String simpleEntitiesPath = parser.get("simpleEntitiesPath");
log.info("simpleEntitiesPath: {}", simpleEntitiesPath);
final SparkConf conf = new SparkConf();
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
ClusterUtils.removeDir(spark, simpleEntitiesPath);
expandResultsWithRelations(spark, graphPath, Publication.class)
.write()
.mode(SaveMode.Overwrite)
.json(simpleEntitiesPath);
// TODO UNCOMMENT THIS
// spark
// .emptyDataset(Encoders.bean(Event.class))
// .union(generateEvents(spark, graphPath, Publication.class, dedupConfig))
// .union(generateEvents(spark, graphPath, eu.dnetlib.dhp.schema.oaf.Dataset.class, dedupConfig))
// .union(generateEvents(spark, graphPath, Software.class, dedupConfig))
// .union(generateEvents(spark, graphPath, OtherResearchProduct.class, dedupConfig))
// .write()
// .mode(SaveMode.Overwrite)
// .option("compression", "gzip")
// .json(eventsPath);
});
}
private static <SRC extends Result> Dataset<OaBrokerMainEntity> expandResultsWithRelations(
final SparkSession spark,
final String graphPath,
final Class<SRC> sourceClass) {
return ClusterUtils
.readPath(spark, graphPath + "/" + sourceClass.getSimpleName().toLowerCase(), sourceClass)
.filter(r -> r.getDataInfo().getDeletedbyinference())
.map(ConversionUtils::oafResultToBrokerResult, Encoders.bean(OaBrokerMainEntity.class));
}
}

16
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/UpdateMatcher.java
View File

@ -12,7 +12,7 @@ import java.util.function.Function;
import org.apache.commons.codec.digest.DigestUtils;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.pace.config.DedupConfig;
@ -21,11 +21,11 @@ public abstract class UpdateMatcher<T> {
private final boolean multipleUpdate;
private final Function<T, Topic> topicFunction;
private final BiConsumer<OpenaireBrokerResult, T> compileHighlightFunction;
private final BiConsumer<OaBrokerMainEntity, T> compileHighlightFunction;
private final Function<T, String> highlightToStringFunction;
public UpdateMatcher(final boolean multipleUpdate, final Function<T, Topic> topicFunction,
final BiConsumer<OpenaireBrokerResult, T> compileHighlightFunction,
final BiConsumer<OaBrokerMainEntity, T> compileHighlightFunction,
final Function<T, String> highlightToStringFunction) {
this.multipleUpdate = multipleUpdate;
this.topicFunction = topicFunction;
@ -33,13 +33,13 @@ public abstract class UpdateMatcher<T> {
this.highlightToStringFunction = highlightToStringFunction;
}
public Collection<UpdateInfo<T>> searchUpdatesForRecord(final OpenaireBrokerResult res,
final Collection<OpenaireBrokerResult> others,
public Collection<UpdateInfo<T>> searchUpdatesForRecord(final OaBrokerMainEntity res,
final Collection<OaBrokerMainEntity> others,
final DedupConfig dedupConfig) {
final Map<String, UpdateInfo<T>> infoMap = new HashMap<>();
for (final OpenaireBrokerResult source : others) {
for (final OaBrokerMainEntity source : others) {
if (source != res) {
for (final T hl : findDifferences(source, res)) {
final Topic topic = getTopicFunction().apply(hl);
@ -68,7 +68,7 @@ public abstract class UpdateMatcher<T> {
}
}
protected abstract List<T> findDifferences(OpenaireBrokerResult source, OpenaireBrokerResult target);
protected abstract List<T> findDifferences(OaBrokerMainEntity source, OaBrokerMainEntity target);
protected static boolean isMissing(final List<String> list) {
return list == null || list.isEmpty() || StringUtils.isBlank(list.get(0));
@ -86,7 +86,7 @@ public abstract class UpdateMatcher<T> {
return topicFunction;
}
public BiConsumer<OpenaireBrokerResult, T> getCompileHighlightFunction() {
public BiConsumer<OaBrokerMainEntity, T> getCompileHighlightFunction() {
return compileHighlightFunction;
}

13
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/AbstractEnrichMissingDataset.java
View File

@ -5,13 +5,12 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.Dataset;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerRelatedDataset;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public abstract class AbstractEnrichMissingDataset
extends UpdateMatcher<Dataset> {
public abstract class AbstractEnrichMissingDataset extends UpdateMatcher<OaBrokerRelatedDataset> {
public AbstractEnrichMissingDataset(final Topic topic) {
super(true,
@ -23,14 +22,14 @@ public abstract class AbstractEnrichMissingDataset
protected abstract boolean filterByType(String relType);
@Override
protected final List<Dataset> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected final List<OaBrokerRelatedDataset> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingDatasets = target
.getDatasets()
.stream()
.filter(rel -> filterByType(rel.getRelType()))
.map(Dataset::getOriginalId)
.map(OaBrokerRelatedDataset::getOriginalId)
.collect(Collectors.toSet());
return source

8
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMissingProject.java
View File

@ -4,12 +4,12 @@ package eu.dnetlib.dhp.broker.oa.matchers.relatedProjects;
import java.util.ArrayList;
import java.util.List;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.Project;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerProject;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMissingProject extends UpdateMatcher<Project> {
public class EnrichMissingProject extends UpdateMatcher<OaBrokerProject> {
public EnrichMissingProject() {
super(true,
@ -19,7 +19,7 @@ public class EnrichMissingProject extends UpdateMatcher<Project> {
}
@Override
protected List<Project> findDifferences(final OpenaireBrokerResult source, final OpenaireBrokerResult target) {
protected List<OaBrokerProject> findDifferences(final OaBrokerMainEntity source, final OaBrokerMainEntity target) {
if (target.getProjects().isEmpty()) {
return source.getProjects();
} else {

12
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMoreProject.java
View File

@ -5,12 +5,12 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.Project;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerProject;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMoreProject extends UpdateMatcher<Project> {
public class EnrichMoreProject extends UpdateMatcher<OaBrokerProject> {
public EnrichMoreProject() {
super(true,
@ -19,13 +19,13 @@ public class EnrichMoreProject extends UpdateMatcher<Project> {
prj -> projectAsString(prj));
}
private static String projectAsString(final Project prj) {
private static String projectAsString(final OaBrokerProject prj) {
return prj.getFunder() + "::" + prj.getFundingProgram() + "::" + prj.getCode();
}
@Override
protected List<eu.dnetlib.broker.objects.Project> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerProject> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingProjects = target
.getProjects()

14
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/AbstractEnrichMissingPublication.java
View File

@ -5,12 +5,12 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.Publication;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerRelatedPublication;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public abstract class AbstractEnrichMissingPublication extends UpdateMatcher<Publication> {
public abstract class AbstractEnrichMissingPublication extends UpdateMatcher<OaBrokerRelatedPublication> {
public AbstractEnrichMissingPublication(final Topic topic) {
super(true,
@ -23,15 +23,15 @@ public abstract class AbstractEnrichMissingPublication extends UpdateMatcher<Pub
protected abstract boolean filterByType(String relType);
@Override
protected final List<eu.dnetlib.broker.objects.Publication> findDifferences(
final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected final List<OaBrokerRelatedPublication> findDifferences(
final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingPublications = target
.getPublications()
.stream()
.filter(rel -> filterByType(rel.getRelType()))
.map(Publication::getOriginalId)
.map(OaBrokerRelatedPublication::getOriginalId)
.collect(Collectors.toSet());
return source

11
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedSoftware/EnrichMissingSoftware.java
View File

@ -4,12 +4,13 @@ package eu.dnetlib.dhp.broker.oa.matchers.relatedSoftware;
import java.util.ArrayList;
import java.util.List;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMissingSoftware
extends UpdateMatcher<eu.dnetlib.broker.objects.Software> {
extends UpdateMatcher<OaBrokerRelatedSoftware> {
public EnrichMissingSoftware() {
super(true,
@ -19,9 +20,9 @@ public class EnrichMissingSoftware
}
@Override
protected List<eu.dnetlib.broker.objects.Software> findDifferences(
final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerRelatedSoftware> findDifferences(
final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
if (target.getSoftwares().isEmpty()) {
return source.getSoftwares();

14
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedSoftware/EnrichMoreSoftware.java
View File

@ -5,12 +5,12 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.Software;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMoreSoftware extends UpdateMatcher<Software> {
public class EnrichMoreSoftware extends UpdateMatcher<OaBrokerRelatedSoftware> {
public EnrichMoreSoftware() {
super(true,
@ -20,14 +20,14 @@ public class EnrichMoreSoftware extends UpdateMatcher<Software> {
}
@Override
protected List<eu.dnetlib.broker.objects.Software> findDifferences(
final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerRelatedSoftware> findDifferences(
final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingSoftwares = source
.getSoftwares()
.stream()
.map(Software::getName)
.map(OaBrokerRelatedSoftware::getName)
.collect(Collectors.toSet());
return target

4
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAbstract.java
View File

@ -5,7 +5,7 @@ import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
@ -19,7 +19,7 @@ public class EnrichMissingAbstract extends UpdateMatcher<String> {
}
@Override
protected List<String> findDifferences(final OpenaireBrokerResult source, final OpenaireBrokerResult target) {
protected List<String> findDifferences(final OaBrokerMainEntity source, final OaBrokerMainEntity target) {
if (isMissing(target.getAbstracts()) && !isMissing(source.getAbstracts())) {
return Arrays.asList(source.getAbstracts().get(0));
} else {

12
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAuthorOrcid.java
View File

@ -7,12 +7,12 @@ import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.broker.objects.Author;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerAuthor;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMissingAuthorOrcid extends UpdateMatcher<Author> {
public class EnrichMissingAuthorOrcid extends UpdateMatcher<OaBrokerAuthor> {
public EnrichMissingAuthorOrcid() {
super(true,
@ -22,13 +22,13 @@ public class EnrichMissingAuthorOrcid extends UpdateMatcher<Author> {
}
@Override
protected List<Author> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerAuthor> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingOrcids = target
.getCreators()
.stream()
.map(Author::getOrcid)
.map(OaBrokerAuthor::getOrcid)
.filter(StringUtils::isNotBlank)
.collect(Collectors.toSet());

14
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingOpenAccess.java
View File

@ -5,28 +5,28 @@ import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerInstance;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
public class EnrichMissingOpenAccess extends UpdateMatcher<Instance> {
public class EnrichMissingOpenAccess extends UpdateMatcher<OaBrokerInstance> {
public EnrichMissingOpenAccess() {
super(true,
i -> Topic.ENRICH_MISSING_OA_VERSION,
(p, i) -> p.getInstances().add(i),
Instance::getUrl);
OaBrokerInstance::getUrl);
}
@Override
protected List<Instance> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerInstance> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final long count = target
.getInstances()
.stream()
.map(Instance::getLicense)
.map(OaBrokerInstance::getLicense)
.filter(right -> right.equals(BrokerConstants.OPEN_ACCESS))
.count();

10
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPid.java
View File

@ -5,12 +5,12 @@ import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.TypedValue;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerTypedValue;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMissingPid extends UpdateMatcher<TypedValue> {
public class EnrichMissingPid extends UpdateMatcher<OaBrokerTypedValue> {
public EnrichMissingPid() {
super(true,
@ -20,8 +20,8 @@ public class EnrichMissingPid extends UpdateMatcher<TypedValue> {
}
@Override
protected List<TypedValue> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerTypedValue> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final long count = target.getPids().size();
if (count > 0) {

6
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPublicationDate.java
View File

@ -5,7 +5,7 @@ import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
@ -19,8 +19,8 @@ public class EnrichMissingPublicationDate extends UpdateMatcher<String> {
}
@Override
protected List<String> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<String> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
if (isMissing(target.getPublicationdate()) && !isMissing(source.getPublicationdate())) {
return Arrays.asList(source.getPublicationdate());

12
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSubject.java
View File

@ -5,12 +5,12 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.TypedValue;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerTypedValue;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMissingSubject extends UpdateMatcher<TypedValue> {
public class EnrichMissingSubject extends UpdateMatcher<OaBrokerTypedValue> {
public EnrichMissingSubject() {
super(true,
@ -20,8 +20,8 @@ public class EnrichMissingSubject extends UpdateMatcher<TypedValue> {
}
@Override
protected List<TypedValue> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerTypedValue> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingSubject = target
.getSubjects()
.stream()
@ -35,7 +35,7 @@ public class EnrichMissingSubject extends UpdateMatcher<TypedValue> {
.collect(Collectors.toList());
}
private static String subjectAsString(final TypedValue s) {
private static String subjectAsString(final OaBrokerTypedValue s) {
return s.getType() + "::" + s.getValue();
}

12
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreOpenAccess.java
View File

@ -5,24 +5,24 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerInstance;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
public class EnrichMoreOpenAccess extends UpdateMatcher<Instance> {
public class EnrichMoreOpenAccess extends UpdateMatcher<OaBrokerInstance> {
public EnrichMoreOpenAccess() {
super(true,
i -> Topic.ENRICH_MORE_OA_VERSION,
(p, i) -> p.getInstances().add(i),
Instance::getUrl);
OaBrokerInstance::getUrl);
}
@Override
protected List<Instance> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerInstance> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> urls = target
.getInstances()
.stream()

12
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMorePid.java
View File

@ -5,12 +5,12 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.TypedValue;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerTypedValue;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMorePid extends UpdateMatcher<TypedValue> {
public class EnrichMorePid extends UpdateMatcher<OaBrokerTypedValue> {
public EnrichMorePid() {
super(true,
@ -20,8 +20,8 @@ public class EnrichMorePid extends UpdateMatcher<TypedValue> {
}
@Override
protected List<TypedValue> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerTypedValue> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingPids = target
.getPids()
.stream()
@ -35,7 +35,7 @@ public class EnrichMorePid extends UpdateMatcher<TypedValue> {
.collect(Collectors.toList());
}
private static String pidAsString(final TypedValue pid) {
private static String pidAsString(final OaBrokerTypedValue pid) {
return pid.getType() + "::" + pid.getValue();
}
}

12
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSubject.java
View File

@ -5,12 +5,12 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.TypedValue;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerTypedValue;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
public class EnrichMoreSubject extends UpdateMatcher<TypedValue> {
public class EnrichMoreSubject extends UpdateMatcher<OaBrokerTypedValue> {
public EnrichMoreSubject() {
super(true,
@ -20,8 +20,8 @@ public class EnrichMoreSubject extends UpdateMatcher<TypedValue> {
}
@Override
protected List<TypedValue> findDifferences(final OpenaireBrokerResult source,
final OpenaireBrokerResult target) {
protected List<OaBrokerTypedValue> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
final Set<String> existingSubjects = target
.getSubjects()
.stream()
@ -35,7 +35,7 @@ public class EnrichMoreSubject extends UpdateMatcher<TypedValue> {
.collect(Collectors.toList());
}
private static String subjectAsString(final TypedValue s) {
private static String subjectAsString(final OaBrokerTypedValue s) {
return s.getType() + "::" + s.getValue();
}
}

31
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ClusterUtils.java Normal file
View File

@ -0,0 +1,31 @@
package eu.dnetlib.dhp.broker.oa.util;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SparkSession;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.common.HdfsSupport;
public class ClusterUtils {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void removeDir(final SparkSession spark, final String path) {
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
}
public static <R> Dataset<R> readPath(
final SparkSession spark,
final String inputPath,
final Class<R> clazz) {
return spark
.read()
.textFile(inputPath)
.map((MapFunction<String, R>) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz));
}
}

60
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java
View File

@ -15,8 +15,16 @@ import org.slf4j.LoggerFactory;
import com.google.common.base.Function;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.TypedValue;
import eu.dnetlib.broker.objects.OaBrokerAuthor;
import eu.dnetlib.broker.objects.OaBrokerExternalReference;
import eu.dnetlib.broker.objects.OaBrokerInstance;
import eu.dnetlib.broker.objects.OaBrokerJournal;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerProject;
import eu.dnetlib.broker.objects.OaBrokerRelatedDataset;
import eu.dnetlib.broker.objects.OaBrokerRelatedPublication;
import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware;
import eu.dnetlib.broker.objects.OaBrokerTypedValue;
import eu.dnetlib.dhp.schema.oaf.Author;
import eu.dnetlib.dhp.schema.oaf.Dataset;
import eu.dnetlib.dhp.schema.oaf.ExternalReference;
@ -35,13 +43,13 @@ public class ConversionUtils {
private static final Logger log = LoggerFactory.getLogger(ConversionUtils.class);
public static List<eu.dnetlib.broker.objects.Instance> oafInstanceToBrokerInstances(final Instance i) {
public static List<OaBrokerInstance> oafInstanceToBrokerInstances(final Instance i) {
if (i == null) {
return new ArrayList<>();
}
return mappedList(i.getUrl(), url -> {
final eu.dnetlib.broker.objects.Instance res = new eu.dnetlib.broker.objects.Instance();
final OaBrokerInstance res = new OaBrokerInstance();
res.setUrl(url);
res.setInstancetype(classId(i.getInstancetype()));
res.setLicense(BrokerConstants.OPEN_ACCESS);
@ -50,20 +58,21 @@ public class ConversionUtils {
});
}
public static TypedValue oafPidToBrokerPid(final StructuredProperty sp) {
public static OaBrokerTypedValue oafPidToBrokerPid(final StructuredProperty sp) {
return oafStructPropToBrokerTypedValue(sp);
}
public static TypedValue oafStructPropToBrokerTypedValue(final StructuredProperty sp) {
return sp != null ? new TypedValue(classId(sp.getQualifier()), sp.getValue()) : null;
public static OaBrokerTypedValue oafStructPropToBrokerTypedValue(final StructuredProperty sp) {
return sp != null ? new OaBrokerTypedValue(classId(sp.getQualifier()), sp.getValue()) : null;
}
public static final eu.dnetlib.broker.objects.Dataset oafDatasetToBrokerDataset(final Dataset d) {
public static final OaBrokerRelatedDataset oafDatasetToBrokerDataset(final Dataset d) {
if (d == null) {
return null;
}
final eu.dnetlib.broker.objects.Dataset res = new eu.dnetlib.broker.objects.Dataset();
final OaBrokerRelatedDataset res = new OaBrokerRelatedDataset();
res.setOpenaireId(d.getId());
res.setOriginalId(first(d.getOriginalId()));
res.setTitle(structPropValue(d.getTitle()));
res.setPids(mappedList(d.getPid(), ConversionUtils::oafPidToBrokerPid));
@ -72,12 +81,13 @@ public class ConversionUtils {
return res;
}
public static eu.dnetlib.broker.objects.Publication oafPublicationToBrokerPublication(final Publication p) {
public static OaBrokerRelatedPublication oafPublicationToBrokerPublication(final Publication p) {
if (p == null) {
return null;
}
final eu.dnetlib.broker.objects.Publication res = new eu.dnetlib.broker.objects.Publication();
final OaBrokerRelatedPublication res = new OaBrokerRelatedPublication();
res.setOpenaireId(p.getId());
res.setOriginalId(first(p.getOriginalId()));
res.setTitle(structPropValue(p.getTitle()));
res.setPids(mappedList(p.getPid(), ConversionUtils::oafPidToBrokerPid));
@ -87,12 +97,12 @@ public class ConversionUtils {
return res;
}
public static final OpenaireBrokerResult oafResultToBrokerResult(final Result result) {
public static final OaBrokerMainEntity oafResultToBrokerResult(final Result result) {
if (result == null) {
return null;
}
final OpenaireBrokerResult res = new OpenaireBrokerResult();
final OaBrokerMainEntity res = new OaBrokerMainEntity();
res.setOpenaireId(result.getId());
res.setOriginalId(first(result.getOriginalId()));
@ -118,7 +128,7 @@ public class ConversionUtils {
return res;
}
private static eu.dnetlib.broker.objects.Author oafAuthorToBrokerAuthor(final Author author) {
private static OaBrokerAuthor oafAuthorToBrokerAuthor(final Author author) {
if (author == null) {
return null;
}
@ -135,15 +145,15 @@ public class ConversionUtils {
.findFirst()
.orElse(null) : null;
return new eu.dnetlib.broker.objects.Author(author.getFullname(), pids);
return new OaBrokerAuthor(author.getFullname(), pids);
}
private static eu.dnetlib.broker.objects.Journal oafJournalToBrokerJournal(final Journal journal) {
private static OaBrokerJournal oafJournalToBrokerJournal(final Journal journal) {
if (journal == null) {
return null;
}
final eu.dnetlib.broker.objects.Journal res = new eu.dnetlib.broker.objects.Journal();
final OaBrokerJournal res = new OaBrokerJournal();
res.setName(journal.getName());
res.setIssn(journal.getIssnPrinted());
res.setEissn(journal.getIssnOnline());
@ -152,12 +162,12 @@ public class ConversionUtils {
return res;
}
private static eu.dnetlib.broker.objects.ExternalReference oafExtRefToBrokerExtRef(final ExternalReference ref) {
private static OaBrokerExternalReference oafExtRefToBrokerExtRef(final ExternalReference ref) {
if (ref == null) {
return null;
}
final eu.dnetlib.broker.objects.ExternalReference res = new eu.dnetlib.broker.objects.ExternalReference();
final OaBrokerExternalReference res = new OaBrokerExternalReference();
res.setRefidentifier(ref.getRefidentifier());
res.setSitename(ref.getSitename());
res.setType(classId(ref.getQualifier()));
@ -165,12 +175,13 @@ public class ConversionUtils {
return res;
}
public static final eu.dnetlib.broker.objects.Project oafProjectToBrokerProject(final Project p) {
public static final OaBrokerProject oafProjectToBrokerProject(final Project p) {
if (p == null) {
return null;
}
final eu.dnetlib.broker.objects.Project res = new eu.dnetlib.broker.objects.Project();
final OaBrokerProject res = new OaBrokerProject();
res.setOpenaireId(p.getId());
res.setTitle(fieldValue(p.getTitle()));
res.setAcronym(fieldValue(p.getAcronym()));
res.setCode(fieldValue(p.getCode()));
@ -190,12 +201,13 @@ public class ConversionUtils {
return res;
}
public static final eu.dnetlib.broker.objects.Software oafSoftwareToBrokerSoftware(final Software sw) {
public static final OaBrokerRelatedSoftware oafSoftwareToBrokerSoftware(final Software sw) {
if (sw == null) {
return null;
}
final eu.dnetlib.broker.objects.Software res = new eu.dnetlib.broker.objects.Software();
final OaBrokerRelatedSoftware res = new OaBrokerRelatedSoftware();
res.setOpenaireId(sw.getId());
res.setName(structPropValue(sw.getTitle()));
res.setDescription(fieldValue(sw.getDescription()));
res.setRepository(fieldValue(sw.getCodeRepositoryUrl()));
@ -247,7 +259,7 @@ public class ConversionUtils {
: new ArrayList<>();
}
private static List<TypedValue> structPropTypedList(final List<StructuredProperty> list) {
private static List<OaBrokerTypedValue> structPropTypedList(final List<StructuredProperty> list) {
if (list == null) {
return new ArrayList<>();
}

4
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EventFinder.java
View File

@ -4,7 +4,7 @@ package eu.dnetlib.dhp.broker.oa.util;
import java.util.ArrayList;
import java.util.List;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.broker.model.EventFactory;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets.EnrichMissingDatasetIsReferencedBy;
@ -68,7 +68,7 @@ public class EventFinder {
public static EventGroup generateEvents(final ResultGroup results, final DedupConfig dedupConfig) {
final List<UpdateInfo<?>> list = new ArrayList<>();
for (final OpenaireBrokerResult target : results.getData()) {
for (final OaBrokerMainEntity target : results.getData()) {
for (final UpdateMatcher<?> matcher : matchers) {
list.addAll(matcher.searchUpdatesForRecord(target, results.getData(), dedupConfig));
}

38
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/UpdateInfo.java
View File

@ -9,10 +9,10 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.broker.objects.OpenAireEventPayload;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.Provenance;
import eu.dnetlib.broker.objects.OaBrokerEventPayload;
import eu.dnetlib.broker.objects.OaBrokerInstance;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.broker.objects.OaBrokerProvenance;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.pace.config.DedupConfig;
import eu.dnetlib.pace.model.MapDocument;
@ -25,11 +25,11 @@ public final class UpdateInfo<T> {
private final T highlightValue;
private final OpenaireBrokerResult source;
private final OaBrokerMainEntity source;
private final OpenaireBrokerResult target;
private final OaBrokerMainEntity target;
private final BiConsumer<OpenaireBrokerResult, T> compileHighlight;
private final BiConsumer<OaBrokerMainEntity, T> compileHighlight;
private final Function<T, String> highlightToString;
@ -37,9 +37,9 @@ public final class UpdateInfo<T> {
private static final Logger log = LoggerFactory.getLogger(UpdateInfo.class);
public UpdateInfo(final Topic topic, final T highlightValue, final OpenaireBrokerResult source,
final OpenaireBrokerResult target,
final BiConsumer<OpenaireBrokerResult, T> compileHighlight,
public UpdateInfo(final Topic topic, final T highlightValue, final OaBrokerMainEntity source,
final OaBrokerMainEntity target,
final BiConsumer<OaBrokerMainEntity, T> compileHighlight,
final Function<T, String> highlightToString,
final DedupConfig dedupConfig) {
this.topic = topic;
@ -55,17 +55,17 @@ public final class UpdateInfo<T> {
return highlightValue;
}
public OpenaireBrokerResult getSource() {
public OaBrokerMainEntity getSource() {
return source;
}
public OpenaireBrokerResult getTarget() {
public OaBrokerMainEntity getTarget() {
return target;
}
private float calculateTrust(final DedupConfig dedupConfig,
final OpenaireBrokerResult r1,
final OpenaireBrokerResult r2) {
final OaBrokerMainEntity r1,
final OaBrokerMainEntity r2) {
if (dedupConfig == null) {
return BrokerConstants.MIN_TRUST;
@ -104,11 +104,11 @@ public final class UpdateInfo<T> {
return highlightToString.apply(getHighlightValue());
}
public OpenAireEventPayload asBrokerPayload() {
public OaBrokerEventPayload asBrokerPayload() {
compileHighlight.accept(target, getHighlightValue());
final OpenaireBrokerResult hl = new OpenaireBrokerResult();
final OaBrokerMainEntity hl = new OaBrokerMainEntity();
compileHighlight.accept(hl, getHighlightValue());
final String provId = getSource().getOriginalId();
@ -117,14 +117,14 @@ public final class UpdateInfo<T> {
final String provUrl = getSource()
.getInstances()
.stream()
.map(Instance::getUrl)
.map(OaBrokerInstance::getUrl)
.findFirst()
.orElse(null);
;
final Provenance provenance = new Provenance(provId, provRepo, provUrl);
final OaBrokerProvenance provenance = new OaBrokerProvenance(provId, provRepo, provUrl);
final OpenAireEventPayload res = new OpenAireEventPayload();
final OaBrokerEventPayload res = new OaBrokerEventPayload();
res.setResult(target);
res.setHighlight(hl);
res.setTrust(trust);

6
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/simple/ResultAggregator.java
View File

@ -5,11 +5,11 @@ import org.apache.spark.sql.Encoder;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.expressions.Aggregator;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import eu.dnetlib.dhp.schema.oaf.Relation;
import scala.Tuple2;
public class ResultAggregator extends Aggregator<Tuple2<OpenaireBrokerResult, Relation>, ResultGroup, ResultGroup> {
public class ResultAggregator extends Aggregator<Tuple2<OaBrokerMainEntity, Relation>, ResultGroup, ResultGroup> {
/**
*
@ -22,7 +22,7 @@ public class ResultAggregator extends Aggregator<Tuple2<OpenaireBrokerResult, Re
}
@Override
public ResultGroup reduce(final ResultGroup group, final Tuple2<OpenaireBrokerResult, Relation> t) {
public ResultGroup reduce(final ResultGroup group, final Tuple2<OaBrokerMainEntity, Relation> t) {
group.getData().add(t._1);
return group;
}

8
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/simple/ResultGroup.java
View File

@ -5,7 +5,7 @@ import java.io.Serializable;
import java.util.ArrayList;
import java.util.List;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
public class ResultGroup implements Serializable {
@ -14,13 +14,13 @@ public class ResultGroup implements Serializable {
*/
private static final long serialVersionUID = -3360828477088669296L;
private List<OpenaireBrokerResult> data = new ArrayList<>();
private List<OaBrokerMainEntity> data = new ArrayList<>();
public List<OpenaireBrokerResult> getData() {
public List<OaBrokerMainEntity> getData() {
return data;
}
public void setData(final List<OpenaireBrokerResult> data) {
public void setData(final List<OaBrokerMainEntity> data) {
this.data = data;
}

26
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/OpenaireBrokerResultAggregator.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/OaBrokerMainEntityAggregator.java
View File

@ -5,11 +5,11 @@ import org.apache.spark.sql.Encoder;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.expressions.Aggregator;
import eu.dnetlib.broker.objects.OpenaireBrokerResult;
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
import scala.Tuple2;
public class OpenaireBrokerResultAggregator<T>
extends Aggregator<Tuple2<OpenaireBrokerResult, T>, OpenaireBrokerResult, OpenaireBrokerResult> {
public class OaBrokerMainEntityAggregator<T>
extends Aggregator<Tuple2<OaBrokerMainEntity, T>, OaBrokerMainEntity, OaBrokerMainEntity> {
/**
*
@ -17,17 +17,17 @@ public class OpenaireBrokerResultAggregator<T>
private static final long serialVersionUID = -3687878788861013488L;
@Override
public OpenaireBrokerResult zero() {
return new OpenaireBrokerResult();
public OaBrokerMainEntity zero() {
return new OaBrokerMainEntity();
}
@Override
public OpenaireBrokerResult finish(final OpenaireBrokerResult g) {
public OaBrokerMainEntity finish(final OaBrokerMainEntity g) {
return g;
}
@Override
public OpenaireBrokerResult reduce(final OpenaireBrokerResult g, final Tuple2<OpenaireBrokerResult, T> t) {
public OaBrokerMainEntity reduce(final OaBrokerMainEntity g, final Tuple2<OaBrokerMainEntity, T> t) {
if (g.getOriginalId() == null) {
return t._1;
} else if (t._2 instanceof RelatedSoftware) {
@ -38,13 +38,15 @@ public class OpenaireBrokerResultAggregator<T>
g.getPublications().add(((RelatedPublication) t._2).getRelPublication());
} else if (t._2 instanceof RelatedProject) {
g.getProjects().add(((RelatedProject) t._2).getRelProject());
} else {
throw new RuntimeException("Invalid Object: " + t._2.getClass());
}
return g;
}
@Override
public OpenaireBrokerResult merge(final OpenaireBrokerResult g1, final OpenaireBrokerResult g2) {
public OaBrokerMainEntity merge(final OaBrokerMainEntity g1, final OaBrokerMainEntity g2) {
if (g1.getOriginalId() != null) {
g1.getSoftwares().addAll(g2.getSoftwares());
g1.getDatasets().addAll(g2.getDatasets());
@ -57,13 +59,13 @@ public class OpenaireBrokerResultAggregator<T>
}
@Override
public Encoder<OpenaireBrokerResult> bufferEncoder() {
return Encoders.bean(OpenaireBrokerResult.class);
public Encoder<OaBrokerMainEntity> bufferEncoder() {
return Encoders.bean(OaBrokerMainEntity.class);
}
@Override
public Encoder<OpenaireBrokerResult> outputEncoder() {
return Encoders.bean(OpenaireBrokerResult.class);
public Encoder<OaBrokerMainEntity> outputEncoder() {
return Encoders.bean(OaBrokerMainEntity.class);
}
}

10
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedDataset.java
View File

@ -3,7 +3,7 @@ package eu.dnetlib.dhp.broker.oa.util.aggregators.withRels;
import java.io.Serializable;
import eu.dnetlib.broker.objects.Dataset;
import eu.dnetlib.broker.objects.OaBrokerRelatedDataset;
public class RelatedDataset implements Serializable {
@ -13,12 +13,12 @@ public class RelatedDataset implements Serializable {
private static final long serialVersionUID = 774487705184038324L;
private String source;
private String relType;
private Dataset relDataset;
private OaBrokerRelatedDataset relDataset;
public RelatedDataset() {
}
public RelatedDataset(final String source, final String relType, final Dataset relDataset) {
public RelatedDataset(final String source, final String relType, final OaBrokerRelatedDataset relDataset) {
this.source = source;
this.relType = relType;
this.relDataset = relDataset;
@ -40,11 +40,11 @@ public class RelatedDataset implements Serializable {
this.relType = relType;
}
public Dataset getRelDataset() {
public OaBrokerRelatedDataset getRelDataset() {
return relDataset;
}
public void setRelDataset(final Dataset relDataset) {
public void setRelDataset(final OaBrokerRelatedDataset relDataset) {
this.relDataset = relDataset;
}

10
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedProject.java
View File

@ -3,7 +3,7 @@ package eu.dnetlib.dhp.broker.oa.util.aggregators.withRels;
import java.io.Serializable;
import eu.dnetlib.broker.objects.Project;
import eu.dnetlib.broker.objects.OaBrokerProject;
public class RelatedProject implements Serializable {
@ -14,12 +14,12 @@ public class RelatedProject implements Serializable {
private String source;
private String relType;
private Project relProject;
private OaBrokerProject relProject;
public RelatedProject() {
}
public RelatedProject(final String source, final String relType, final Project relProject) {
public RelatedProject(final String source, final String relType, final OaBrokerProject relProject) {
this.source = source;
this.relType = relType;
this.relProject = relProject;
@ -41,11 +41,11 @@ public class RelatedProject implements Serializable {
this.relType = relType;
}
public Project getRelProject() {
public OaBrokerProject getRelProject() {
return relProject;
}
public void setRelProject(final Project relProject) {
public void setRelProject(final OaBrokerProject relProject) {
this.relProject = relProject;
}

11
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedPublication.java
View File

@ -3,7 +3,7 @@ package eu.dnetlib.dhp.broker.oa.util.aggregators.withRels;
import java.io.Serializable;
import eu.dnetlib.broker.objects.Publication;
import eu.dnetlib.broker.objects.OaBrokerRelatedPublication;
public class RelatedPublication implements Serializable {
@ -14,12 +14,13 @@ public class RelatedPublication implements Serializable {
private String source;
private String relType;
private Publication relPublication;
private OaBrokerRelatedPublication relPublication;
public RelatedPublication() {
}
public RelatedPublication(final String source, final String relType, final Publication relPublication) {
public RelatedPublication(final String source, final String relType,
final OaBrokerRelatedPublication relPublication) {
this.source = source;
this.relType = relType;
this.relPublication = relPublication;
@ -41,11 +42,11 @@ public class RelatedPublication implements Serializable {
this.relType = relType;
}
public Publication getRelPublication() {
public OaBrokerRelatedPublication getRelPublication() {
return relPublication;
}
public void setRelPublication(final Publication relPublication) {
public void setRelPublication(final OaBrokerRelatedPublication relPublication) {
this.relPublication = relPublication;
}

10
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedSoftware.java
View File

@ -3,7 +3,7 @@ package eu.dnetlib.dhp.broker.oa.util.aggregators.withRels;
import java.io.Serializable;
import eu.dnetlib.broker.objects.Software;
import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware;
public class RelatedSoftware implements Serializable {
@ -13,12 +13,12 @@ public class RelatedSoftware implements Serializable {
private static final long serialVersionUID = 7573383356943300157L;
private String source;
private String relType;
private Software relSoftware;
private OaBrokerRelatedSoftware relSoftware;
public RelatedSoftware() {
}
public RelatedSoftware(final String source, final String relType, final Software relSoftware) {
public RelatedSoftware(final String source, final String relType, final OaBrokerRelatedSoftware relSoftware) {
this.source = source;
this.relType = relType;
this.relSoftware = relSoftware;
@ -40,11 +40,11 @@ public class RelatedSoftware implements Serializable {
this.relType = relType;
}
public Software getRelSoftware() {
public OaBrokerRelatedSoftware getRelSoftware() {
return relSoftware;
}
public void setRelSoftware(final Software relSoftware) {
public void setRelSoftware(final OaBrokerRelatedSoftware relSoftware) {
this.relSoftware = relSoftware;
}

14
dhp-workflows/dhp-broker-events/src/main/resources/eu/dnetlib/dhp/broker/oa/generate_relations.json Normal file
View File

@ -0,0 +1,14 @@
[
{
"paramName": "g",
"paramLongName": "graphPath",
"paramDescription": "the path where there the graph is stored",
"paramRequired": true
},
{
"paramName": "o",
"paramLongName": "relsPath",
"paramDescription": "the path where the generated relations will be stored",
"paramRequired": true
}
]

14
dhp-workflows/dhp-broker-events/src/main/resources/eu/dnetlib/dhp/broker/oa/generate_simple_entities.json Normal file
View File

@ -0,0 +1,14 @@
[
{
"paramName": "g",
"paramLongName": "graphPath",
"paramDescription": "the path where there the graph is stored",
"paramRequired": true
},
{
"paramName": "o",
"paramLongName": "simpleEntitiesPath",
"paramDescription": "the path where the generated simple entities (without relations) will be stored",
"paramRequired": true
}
]