forked from D-Net/dnet-hadoop
901 lines
32 KiB
Java
901 lines
32 KiB
Java
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package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
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import static eu.dnetlib.dhp.PropagationConstant.readPath;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.KeyValueSet;
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import eu.dnetlib.dhp.PropagationConstant;
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import eu.dnetlib.dhp.schema.common.ModelConstants;
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import eu.dnetlib.dhp.schema.oaf.Relation;
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public class SparkJobTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory.getLogger(SparkJobTest.class);
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(StepActionsTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(PrepareInfoJobTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(PrepareInfoJobTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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public void completeResultExecution() throws Exception {
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final String graphPath = getClass()
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.getResource("/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/graph")
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.getPath();
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final String leavesPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
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.getPath();
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final String childParentPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
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.getPath();
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final String resultOrgPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
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.getPath();
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final String projectOrgPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/projectOrganization/")
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.getPath();
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readPath(spark, leavesPath, Leaves.class)
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.write()
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.option("compression", "gzip")
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.json(workingDir.toString() + "/leavesInput");
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readPath(spark, resultOrgPath, KeyValueSet.class)
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.write()
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.option("compression", "gzip")
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.json(workingDir.toString() + "/orgsInput");
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readPath(spark, projectOrgPath, KeyValueSet.class)
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.write()
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.option("compression", "gzip")
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.json(workingDir.toString() + "/projectInput");
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SparkResultToOrganizationFromSemRel
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-relationPath", graphPath,
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"-hive_metastore_uris", "",
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"-outputPath", workingDir.toString() + "/finalrelation",
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"-leavesPath", workingDir.toString() + "/leavesInput",
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"-resultOrgPath", workingDir.toString() + "/orgsInput",
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"-projectOrganizationPath", workingDir.toString() + "/projectInput",
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"-childParentPath", childParentPath,
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"-workingDir", workingDir.toString()
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Relation> temp = sc
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.textFile(workingDir.toString() + "/finalrelation")
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.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
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Assertions.assertEquals(36, temp.count());
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JavaRDD<Relation> result = temp.filter(r -> r.getSource().startsWith("50|") || r.getTarget().startsWith("50|"));
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Assertions.assertEquals(18, result.count());
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result.foreach(r -> Assertions.assertEquals(ModelConstants.AFFILIATION, r.getSubRelType()));
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result.foreach(r -> Assertions.assertEquals(ModelConstants.RESULT_ORGANIZATION, r.getRelType()));
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result
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.foreach(
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r -> Assertions
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.assertEquals(
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PropagationConstant.PROPAGATION_DATA_INFO_TYPE, r.getDataInfo().getInferenceprovenance()));
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result
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.foreach(
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r -> Assertions
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.assertEquals(
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PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID,
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r.getDataInfo().getProvenanceaction().getClassid()));
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result
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.foreach(
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r -> Assertions
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.assertEquals(
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PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME,
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r.getDataInfo().getProvenanceaction().getClassname()));
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result
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.foreach(
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r -> Assertions
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.assertEquals(
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"0.85",
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r.getDataInfo().getTrust()));
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Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("50|")).count());
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result
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.filter(r -> r.getSource().substring(0, 3).equals("50|"))
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.foreach(r -> Assertions.assertEquals(ModelConstants.HAS_AUTHOR_INSTITUTION, r.getRelClass()));
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Assertions
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.assertEquals(
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2,
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result.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
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Assertions
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.assertEquals(
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3,
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result.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
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Assertions
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.assertEquals(
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2,
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result.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
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Assertions
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.assertEquals(
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1,
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result.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
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Assertions
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.assertEquals(
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1,
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result.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
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Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("20|")).count());
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result
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.filter(r -> r.getSource().substring(0, 3).equals("20|"))
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.foreach(r -> Assertions.assertEquals(ModelConstants.IS_AUTHOR_INSTITUTION_OF, r.getRelClass()));
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Assertions
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.assertEquals(
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1,
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result.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
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Assertions
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.assertEquals(
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1,
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result.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
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Assertions
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.assertEquals(
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2,
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result.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
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Assertions
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.assertEquals(
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2,
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result.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
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Assertions
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.assertEquals(
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3,
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result.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|openaire____::ec653e804967133b9436fdd30d3ff51d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|doajarticles::03748bcb5d754c951efec9700e18a56d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
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Assertions
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.assertTrue(
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result
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.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
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.map(r -> r.getTarget())
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.collect()
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.contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
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}
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@Test
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public void completeProjectExecution() throws Exception {
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final String graphPath = getClass()
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.getResource("/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/graph")
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.getPath();
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final String leavesPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
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.getPath();
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final String childParentPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
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.getPath();
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final String resultOrgPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
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.getPath();
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final String projectOrgPath = getClass()
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.getResource(
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"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/projectOrganization/")
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.getPath();
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readPath(spark, leavesPath, Leaves.class)
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.write()
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.option("compression", "gzip")
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.json(workingDir.toString() + "/leavesInput");
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readPath(spark, resultOrgPath, KeyValueSet.class)
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.write()
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.option("compression", "gzip")
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.json(workingDir.toString() + "/orgsInput");
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readPath(spark, projectOrgPath, KeyValueSet.class)
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.write()
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.option("compression", "gzip")
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.json(workingDir.toString() + "/projectInput");
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SparkResultToOrganizationFromSemRel
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-relationPath", graphPath,
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"-hive_metastore_uris", "",
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"-outputPath", workingDir.toString() + "/finalrelation",
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"-leavesPath", workingDir.toString() + "/leavesInput",
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"-resultOrgPath", workingDir.toString() + "/orgsInput",
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"-projectOrganizationPath", workingDir.toString() + "/projectInput",
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"-childParentPath", childParentPath,
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"-workingDir", workingDir.toString()
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Relation> temp = sc
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.textFile(workingDir.toString() + "/finalrelation")
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.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
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Assertions.assertEquals(36, temp.count());
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JavaRDD<Relation> project = temp
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.filter(r -> r.getSource().startsWith("40|") || r.getTarget().startsWith("40|"));
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Assertions.assertEquals(18, project.count());
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project.foreach(r -> Assertions.assertEquals(ModelConstants.PARTICIPATION, r.getSubRelType()));
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project.foreach(r -> Assertions.assertEquals(ModelConstants.PROJECT_ORGANIZATION, r.getRelType()));
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project
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.foreach(
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r -> Assertions
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.assertEquals(
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PropagationConstant.PROPAGATION_DATA_INFO_TYPE, r.getDataInfo().getInferenceprovenance()));
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project
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.foreach(
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r -> Assertions
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.assertEquals(
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PropagationConstant.PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_ID,
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r.getDataInfo().getProvenanceaction().getClassid()));
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project
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.foreach(
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r -> Assertions
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.assertEquals(
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PropagationConstant.PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_NAME,
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r.getDataInfo().getProvenanceaction().getClassname()));
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project
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.foreach(
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r -> Assertions
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.assertEquals(
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"0.85",
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r.getDataInfo().getTrust()));
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Assertions.assertEquals(9, project.filter(r -> r.getSource().substring(0, 3).equals("40|")).count());
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project
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.filter(r -> r.getSource().substring(0, 3).equals("40|"))
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.foreach(r -> Assertions.assertEquals(ModelConstants.HAS_PARTICIPANT, r.getRelClass()));
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Assertions
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.assertEquals(
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2,
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project.filter(r -> r.getSource().equals("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
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Assertions
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.assertEquals(
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3,
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project.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
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Assertions
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.assertEquals(
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2,
|
|
project.filter(r -> r.getSource().equals("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
|
|
Assertions
|
|
.assertEquals(
|
|
1,
|
|
project.filter(r -> r.getSource().equals("40|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
|
|
Assertions
|
|
.assertEquals(
|
|
1,
|
|
project.filter(r -> r.getSource().equals("40|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
|
|
|
|
Assertions.assertEquals(9, project.filter(r -> r.getSource().substring(0, 3).equals("20|")).count());
|
|
project
|
|
.filter(r -> r.getSource().substring(0, 3).equals("20|"))
|
|
.foreach(r -> Assertions.assertEquals(ModelConstants.IS_PARTICIPANT, r.getRelClass()));
|
|
Assertions
|
|
.assertEquals(
|
|
1,
|
|
project.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
|
|
Assertions
|
|
.assertEquals(
|
|
1,
|
|
project.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
|
|
Assertions
|
|
.assertEquals(
|
|
2,
|
|
project.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
|
|
Assertions
|
|
.assertEquals(
|
|
2,
|
|
project.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
|
|
Assertions
|
|
.assertEquals(
|
|
3,
|
|
project.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|openaire____::ec653e804967133b9436fdd30d3ff51d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("40|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|openaire____::ec653e804967133b9436fdd30d3ff51d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
|
|
Assertions
|
|
.assertTrue(
|
|
project
|
|
.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
|
|
.map(r -> r.getTarget())
|
|
.collect()
|
|
.contains("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
|
|
}
|
|
|
|
@Test
|
|
public void singleIterationExecution() throws Exception {
|
|
|
|
final String graphPath = getClass()
|
|
.getResource("/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/graph")
|
|
.getPath();
|
|
final String leavesPath = getClass()
|
|
.getResource(
|
|
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
|
|
.getPath();
|
|
final String childParentPath = getClass()
|
|
.getResource(
|
|
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
|
|
.getPath();
|
|
|
|
final String resultOrgPath = getClass()
|
|
.getResource(
|
|
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
|
|
.getPath();
|
|
|
|
final String projectOrgPath = getClass()
|
|
.getResource(
|
|
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/projectOrganization/")
|
|
.getPath();
|
|
|
|
readPath(spark, leavesPath, Leaves.class)
|
|
.write()
|
|
.option("compression", "gzip")
|
|
.json(workingDir.toString() + "/leavesInput");
|
|
|
|
readPath(spark, resultOrgPath, KeyValueSet.class)
|
|
.write()
|
|
.option("compression", "gzip")
|
|
.json(workingDir.toString() + "/orgsInput");
|
|
|
|
readPath(spark, projectOrgPath, KeyValueSet.class)
|
|
.write()
|
|
.option("compression", "gzip")
|
|
.json(workingDir.toString() + "/projectInput");
|
|
|
|
SparkResultToOrganizationFromSemRel
|
|
|
|
.main(
|
|
new String[] {
|
|
"-isSparkSessionManaged", Boolean.FALSE.toString(),
|
|
"-relationPath", graphPath,
|
|
"-hive_metastore_uris", "",
|
|
"-outputPath", workingDir.toString() + "/finalrelation",
|
|
"-leavesPath", workingDir.toString() + "/leavesInput",
|
|
"-resultOrgPath", workingDir.toString() + "/orgsInput",
|
|
"-projectOrganizationPath", workingDir.toString() + "/projectInput",
|
|
"-childParentPath", childParentPath,
|
|
"-workingDir", workingDir.toString(),
|
|
"-iterations", "1"
|
|
});
|
|
|
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
|
|
|
JavaRDD<Relation> temp = sc
|
|
.textFile(workingDir.toString() + "/finalrelation")
|
|
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
|
|
|
|
Assertions.assertEquals(16, temp.count());
|
|
|
|
Assertions.assertEquals(4, temp.filter(r -> r.getSource().startsWith("50|")).count());
|
|
Assertions.assertEquals(4, temp.filter(r -> r.getTarget().startsWith("50|")).count());
|
|
Assertions.assertEquals(4, temp.filter(r -> r.getSource().startsWith("40|")).count());
|
|
Assertions.assertEquals(4, temp.filter(r -> r.getTarget().startsWith("40|")).count());
|
|
Assertions.assertEquals(8, temp.filter(r -> r.getSource().startsWith("20|")).count());
|
|
Assertions.assertEquals(8, temp.filter(r -> r.getSource().startsWith("20|")).count());
|
|
|
|
// JavaRDD<Relation> result = temp.filter(r -> r.getSource().startsWith("50|") || r.getTarget().startsWith("50|"));
|
|
// Assertions.assertEquals(18, result.count());
|
|
// result.foreach(r -> Assertions.assertEquals(ModelConstants.AFFILIATION, r.getSubRelType()));
|
|
// result.foreach(r -> Assertions.assertEquals(ModelConstants.RESULT_ORGANIZATION, r.getRelType()));
|
|
// result
|
|
// .foreach(
|
|
// r -> Assertions
|
|
// .assertEquals(
|
|
// PropagationConstant.PROPAGATION_DATA_INFO_TYPE, r.getDataInfo().getInferenceprovenance()));
|
|
// result
|
|
// .foreach(
|
|
// r -> Assertions
|
|
// .assertEquals(
|
|
// PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID,
|
|
// r.getDataInfo().getProvenanceaction().getClassid()));
|
|
// result
|
|
// .foreach(
|
|
// r -> Assertions
|
|
// .assertEquals(
|
|
// PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME,
|
|
// r.getDataInfo().getProvenanceaction().getClassname()));
|
|
// result
|
|
// .foreach(
|
|
// r -> Assertions
|
|
// .assertEquals(
|
|
// "0.85",
|
|
// r.getDataInfo().getTrust()));
|
|
//
|
|
// Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("50|")).count());
|
|
// result
|
|
// .filter(r -> r.getSource().substring(0, 3).equals("50|"))
|
|
// .foreach(r -> Assertions.assertEquals(ModelConstants.HAS_AUTHOR_INSTITUTION, r.getRelClass()));
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 2, result.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 3, result.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 2, result.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 1, result.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 1, result.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
|
|
//
|
|
// Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("20|")).count());
|
|
// result
|
|
// .filter(r -> r.getSource().substring(0, 3).equals("20|"))
|
|
// .foreach(r -> Assertions.assertEquals(ModelConstants.IS_AUTHOR_INSTITUTION_OF, r.getRelClass()));
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 1, result.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 1, result.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 2, result.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 2, result.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
|
|
// Assertions
|
|
// .assertEquals(
|
|
// 3, result.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|openaire____::ec653e804967133b9436fdd30d3ff51d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|doajarticles::03748bcb5d754c951efec9700e18a56d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
|
|
//
|
|
// Assertions
|
|
// .assertTrue(
|
|
// result
|
|
// .filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
|
|
// .map(r -> r.getTarget())
|
|
// .collect()
|
|
// .contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
|
|
}
|
|
}
|