forked from D-Net/dnet-hadoop
297 lines
14 KiB
XML
297 lines
14 KiB
XML
<workflow-app name="subject_to_result_propagation" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>sourcePath</name>
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<description>the source path</description>
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</property>
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<property>
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<name>subjectlist</name>
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<value>fos;sdg</value>
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<description>the list of subject classid to propagate (split by ;)</description>
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</property>
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<property>
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<name>allowedsemrels</name>
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<value>IsSupplementedBy;IsSupplementTo;IsPreviousVersionOf;IsNewVersionOf;IsIdenticalTo;Obsoletes;IsObsoletedBy;IsVersionOf</value>
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<description>the allowed semantics </description>
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</property>
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<property>
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<name>outputPath</name>
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<description>the output path</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="reset_outputpath"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="reset_outputpath">
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<fs>
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<delete path="${outputPath}"/>
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<mkdir path="${outputPath}"/>
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</fs>
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<ok to="prepare_subject_propagation"/>
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<error to="Kill"/>
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</action>
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<fork name="prepare_subject_propagation">
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<path start="prepare_subject_propagation_publication"/>
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<path start="prepare_subject_propagation_dataset"/>
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<path start="prepare_subject_propagation_software"/>
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<path start="prepare_subject_propagation_orp"/>
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</fork>
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<action name="prepare_subject_propagation_publication">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>PrepareSubjectResultsAssociation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.PrepareResultResultStep1</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
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<arg>--subjectlist</arg><arg>${subjectlist}</arg>
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<arg>--resultType</arg><arg>publication</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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<arg>--outputPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_prepare"/>
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<error to="Kill"/>
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</action>
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<action name="prepare_subject_propagation_dataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>PrepareSubjectResultsAssociation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.PrepareResultResultStep1</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
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<arg>--subjectlist</arg><arg>${subjectlist}</arg>
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<arg>--resultType</arg><arg>dataset</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
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<arg>--outputPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_prepare"/>
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<error to="Kill"/>
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</action>
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<action name="prepare_subject_propagation_software">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>PrepareSubjectResultsAssociation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.PrepareResultResultStep1</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
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<arg>--subjectlist</arg><arg>${subjectlist}</arg>
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<arg>--resultType</arg><arg>software</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
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<arg>--outputPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_prepare"/>
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<error to="Kill"/>
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</action>
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<action name="prepare_subject_propagation_orp">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>PrepareSubjectResultsAssociation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.PrepareResultResultStep1</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
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<arg>--subjectlist</arg><arg>${subjectlist}</arg>
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<arg>--resultType</arg><arg>otherresearchproduct</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
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<arg>--outputPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_prepare"/>
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<error to="Kill"/>
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</action>
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<join name="wait_prepare" to="propagate_subject"/>
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<fork name="propagate_subject">
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<path start="propagate_subject_publication"/>
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<path start="propagate_subject_dataset"/>
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<path start="propagate_subject_software"/>
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<path start="propagate_subject_otherresearchproduct"/>
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</fork>
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<action name="propagate_subject_publication">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>SubjectToResultPropagation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.SparkSubjectPropagationStep2</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=8G
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--outputPath</arg><arg>${outputPath}</arg>
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<arg>--workingPath</arg><arg>${workingDir}/working</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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<arg>--resultType</arg><arg>publication</arg>
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<arg>--preparedPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_propagation"/>
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<error to="Kill"/>
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</action>
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<action name="propagate_subject_otherresearchproduct">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>SubjectToResultPropagation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.SparkSubjectPropagationStep2</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--outputPath</arg><arg>${outputPath}</arg>
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<arg>--workingPath</arg><arg>${workingDir}/working</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
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<arg>--resultType</arg><arg>otherresearchproduct</arg>
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<arg>--preparedPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_propagation"/>
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<error to="Kill"/>
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</action>
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<action name="propagate_subject_dataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>SubjectToResultPropagation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.SparkSubjectPropagationStep2</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--outputPath</arg><arg>${outputPath}</arg>
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<arg>--workingPath</arg><arg>${workingDir}/working</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
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<arg>--resultType</arg><arg>dataset</arg>
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<arg>--preparedPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_propagation"/>
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<error to="Kill"/>
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</action>
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<action name="propagate_subject_software">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>SubjectToResultPropagation</name>
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<class>eu.dnetlib.dhp.subjecttoresultfromsemrel.SparkSubjectPropagationStep2</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--outputPath</arg><arg>${outputPath}</arg>
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<arg>--workingPath</arg><arg>${workingDir}/working</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
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<arg>--resultType</arg><arg>software</arg>
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<arg>--preparedPath</arg><arg>${workingDir}/preparedInfo</arg>
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</spark>
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<ok to="wait_propagation"/>
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<error to="Kill"/>
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</action>
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<join name="wait_propagation" to="End"/>
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<end name="End"/>
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</workflow-app> |