forked from D-Net/dnet-hadoop
800 lines
36 KiB
SQL
Executable File
800 lines
36 KiB
SQL
Executable File
-- Sprint 1 ----
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create table if not exists indi_pub_green_oa stored as parquet as
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select distinct p.id, coalesce(green_oa, 0) as green_oa
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from publication p
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left outer join (
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select p.id, 1 as green_oa
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from publication p
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join result_instance ri on ri.id = p.id
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join datasource on datasource.id = ri.hostedby
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where datasource.type like '%Repository%'
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and (ri.accessright = 'Open Access'
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or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp
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on p.id= tmp.id;
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ANALYZE TABLE indi_pub_green_oa COMPUTE STATISTICS;
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create table if not exists indi_pub_grey_lit stored as parquet as
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select distinct p.id, coalesce(grey_lit, 0) as grey_lit
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from publication p
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left outer join (
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select p.id, 1 as grey_lit
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from publication p
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join result_classifications rt on rt.id = p.id
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where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and
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not exists (select 1 from result_classifications rc where type ='Other literature type'
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and rc.id=p.id)) tmp on p.id=tmp.id;
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ANALYZE TABLE indi_pub_grey_lit COMPUTE STATISTICS;
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create table if not exists indi_pub_doi_from_crossref stored as parquet as
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select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref
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from publication p
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left outer join
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(select ri.id, 1 as doi_from_crossref from result_instance ri
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join datasource d on d.id = ri.collectedfrom
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where pidtype='Digital Object Identifier' and d.name ='Crossref') tmp
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on tmp.id=p.id;
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ANALYZE TABLE indi_pub_doi_from_crossref COMPUTE STATISTICS;
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-- Sprint 2 ----
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create table if not exists indi_result_has_cc_licence stored as parquet as
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select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
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from result r
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left outer join (select r.id, license.type as lic from result r
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join result_licenses as license on license.id = r.id
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where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp
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on r.id= tmp.id;
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ANALYZE TABLE indi_result_has_cc_licence COMPUTE STATISTICS;
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create table if not exists indi_result_has_cc_licence_url stored as parquet as
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select distinct r.id, case when lic_host='' or lic_host is null then 0 else 1 end as has_cc_license_url
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from result r
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left outer join (select r.id, lower(parse_url(license.type, "HOST")) as lic_host
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from result r
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join result_licenses as license on license.id = r.id
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WHERE lower(parse_url(license.type, "HOST")) = "creativecommons.org") tmp
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on r.id= tmp.id;
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ANALYZE TABLE indi_result_has_cc_licence_url COMPUTE STATISTICS;
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create table if not exists indi_pub_has_abstract stored as parquet as
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select distinct publication.id, cast(coalesce(abstract, true) as int) has_abstract
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from publication;
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ANALYZE TABLE indi_pub_has_abstract COMPUTE STATISTICS;
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create table if not exists indi_result_with_orcid stored as parquet as
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select distinct r.id, coalesce(has_orcid, 0) as has_orcid
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from result r
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left outer join (select id, 1 as has_orcid from result_orcid) tmp
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on r.id= tmp.id;
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ANALYZE TABLE indi_result_with_orcid COMPUTE STATISTICS;
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---- Sprint 3 ----
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create table if not exists indi_funded_result_with_fundref stored as parquet as
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select distinct r.result as id, coalesce(fundref, 0) as fundref
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from project_results r
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left outer join (select distinct result, 1 as fundref from project_results
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where provenance='Harvested') tmp
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on r.result= tmp.result;
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ANALYZE TABLE indi_funded_result_with_fundref COMPUTE STATISTICS;
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-- create table indi_result_org_collab stored as parquet as
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-- select o1.organization org1, o2.organization org2, count(distinct o1.id) as collaborations
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-- from result_organization as o1
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-- join result_organization as o2 on o1.id=o2.id and o1.organization!=o2.organization
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-- group by o1.organization, o2.organization;
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--
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-- compute stats indi_result_org_collab;
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--
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create TEMPORARY TABLE tmp AS SELECT ro.organization organization, ro.id, o.name from result_organization ro
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join organization o on o.id=ro.organization where o.name is not null;
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create table if not exists indi_result_org_collab stored as parquet as
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select o1.organization org1, o1.name org1name1, o2.organization org2, o2.name org2name2, count(o1.id) as collaborations
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from tmp as o1
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join tmp as o2 where o1.id=o2.id and o1.organization!=o2.organization and o1.name!=o2.name
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group by o1.organization, o2.organization, o1.name, o2.name;
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drop table tmp purge;
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ANALYZE TABLE indi_result_org_collab COMPUTE STATISTICS;
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create TEMPORARY TABLE tmp AS
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select distinct ro.organization organization, ro.id, o.name, o.country from result_organization ro
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join organization o on o.id=ro.organization where country <> 'UNKNOWN' and o.name is not null;
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create table if not exists indi_result_org_country_collab stored as parquet as
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select o1.organization org1,o1.name org1name1, o2.country country2, count(o1.id) as collaborations
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from tmp as o1 join tmp as o2 on o1.id=o2.id
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where o1.id=o2.id and o1.country!=o2.country
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group by o1.organization, o1.id, o1.name, o2.country;
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drop table tmp purge;
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ANALYZE TABLE indi_result_org_country_collab COMPUTE STATISTICS;
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create TEMPORARY TABLE tmp AS
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select o.id organization, o.name, ro.project as project from organization o
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join organization_projects ro on o.id=ro.id where o.name is not null;
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create table if not exists indi_project_collab_org stored as parquet as
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select o1.organization org1,o1.name orgname1, o2.organization org2, o2.name orgname2, count(distinct o1.project) as collaborations
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from tmp as o1
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join tmp as o2 on o1.project=o2.project
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where o1.organization<>o2.organization and o1.name<>o2.name
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group by o1.name,o2.name, o1.organization, o2.organization;
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drop table tmp purge;
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ANALYZE TABLE indi_project_collab_org COMPUTE STATISTICS;
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create TEMPORARY TABLE tmp AS
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select o.id organization, o.name, o.country , ro.project as project from organization o
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join organization_projects ro on o.id=ro.id
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and o.country <> 'UNKNOWN' and o.name is not null;
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create table if not exists indi_project_collab_org_country stored as parquet as
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select o1.organization org1,o1.name org1name, o2.country country2, count(distinct o1.project) as collaborations
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from tmp as o1
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join tmp as o2 on o1.project=o2.project
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where o1.organization<>o2.organization and o1.country<>o2.country
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group by o1.organization, o2.country, o1.name;
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drop table tmp purge;
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ANALYZE TABLE indi_project_collab_org_country COMPUTE STATISTICS;
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create table if not exists indi_funder_country_collab stored as parquet as
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with tmp as (select funder, project, country from organization_projects op
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join organization o on o.id=op.id
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join project p on p.id=op.project
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where country <> 'UNKNOWN')
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select f1.funder, f1.country as country1, f2.country as country2, count(distinct f1.project) as collaborations
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from tmp as f1
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join tmp as f2 on f1.project=f2.project
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where f1.country<>f2.country
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group by f1.funder, f2.country, f1.country;
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ANALYZE TABLE indi_funder_country_collab COMPUTE STATISTICS;
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create TEMPORARY TABLE tmp AS
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select distinct country, ro.id as result from organization o
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join result_organization ro on o.id=ro.organization
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where country <> 'UNKNOWN' and o.name is not null;
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create table if not exists indi_result_country_collab stored as parquet as
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select o1.country country1, o2.country country2, count(o1.result) as collaborations
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from tmp as o1
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join tmp as o2 on o1.result=o2.result
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where o1.country<>o2.country
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group by o1.country, o2.country;
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drop table tmp purge;
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ANALYZE TABLE indi_result_country_collab COMPUTE STATISTICS;
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---- Sprint 4 ----
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create table if not exists indi_pub_diamond stored as parquet as
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select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
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from publication_datasources pd
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left outer join (
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select pd.id, 1 as in_diamond_journal from publication_datasources pd
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join datasource d on d.id=pd.datasource
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join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
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and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp
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on pd.id=tmp.id;
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ANALYZE TABLE indi_pub_diamond COMPUTE STATISTICS;
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create table if not exists indi_pub_in_transformative stored as parquet as
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select distinct pd.id, coalesce(is_transformative, 0) as is_transformative
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from publication pd
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left outer join (
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select pd.id, 1 as is_transformative from publication_datasources pd
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join datasource d on d.id=pd.datasource
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join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
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and ps.is_transformative_journal=true) tmp
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on pd.id=tmp.id;
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ANALYZE TABLE indi_pub_in_transformative COMPUTE STATISTICS;
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create table if not exists indi_pub_closed_other_open stored as parquet as
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select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from result_instance ri
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left outer join
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(select ri.id, 1 as pub_closed_other_open from result_instance ri
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join publication p on p.id=ri.id
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join datasource d on ri.hostedby=d.id
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where d.type like '%Journal%' and ri.accessright='Closed Access' and
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(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp
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on tmp.id=ri.id;
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ANALYZE TABLE indi_pub_closed_other_open COMPUTE STATISTICS;
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---- Sprint 5 ----
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create table if not exists indi_result_no_of_copies stored as parquet as
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select id, count(id) as number_of_copies from result_instance group by id;
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ANALYZE TABLE indi_result_no_of_copies COMPUTE STATISTICS;
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---- Sprint 6 ----
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create table if not exists indi_pub_downloads stored as parquet as
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SELECT result_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats
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join publication on result_id=id
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where downloads>0
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GROUP BY result_id
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order by no_downloads desc;
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ANALYZE TABLE indi_pub_downloads COMPUTE STATISTICS;
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create table if not exists indi_pub_downloads_datasource stored as parquet as
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SELECT result_id, repository_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats
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join publication on result_id=id
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where downloads>0
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GROUP BY result_id, repository_id
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order by result_id;
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ANALYZE TABLE indi_pub_downloads_datasource COMPUTE STATISTICS;
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create table if not exists indi_pub_downloads_year stored as parquet as
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SELECT result_id, substring(us.`date`, 1,4) as `year`, sum(downloads) no_downloads
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from openaire_prod_usage_stats.usage_stats us
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join publication on result_id=id where downloads>0
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GROUP BY result_id, substring(us.`date`, 1,4);
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ANALYZE TABLE indi_pub_downloads_year COMPUTE STATISTICS;
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create table if not exists indi_pub_downloads_datasource_year stored as parquet as
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SELECT result_id, substring(us.`date`, 1,4) as `year`, repository_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats us
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join publication on result_id=id
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where downloads>0
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GROUP BY result_id, repository_id, substring(us.`date`, 1,4);
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ANALYZE TABLE indi_pub_downloads_datasource_year COMPUTE STATISTICS;
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---- Sprint 7 ----
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create table if not exists indi_pub_gold_oa stored as parquet as
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WITH gold_oa AS ( SELECT
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issn_l,
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journal_is_in_doaj,
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journal_is_oa,
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issn_1 as issn
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FROM
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STATS_EXT.oa_journals
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WHERE
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issn_1 != ""
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UNION
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ALL SELECT
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issn_l,
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journal_is_in_doaj,
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journal_is_oa,
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issn_2 as issn
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FROM
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STATS_EXT.oa_journals
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WHERE
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issn_2 != "" ), issn AS ( SELECT
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*
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FROM
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( SELECT
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id,
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issn_printed as issn
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FROM
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datasource
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WHERE
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issn_printed IS NOT NULL
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UNION ALL
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SELECT
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id,
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issn_online as issn
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FROM
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datasource
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WHERE
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issn_online IS NOT NULL or id like '%doajarticles%') as issn
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WHERE
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LENGTH(issn) > 7)
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SELECT
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DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
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FROM
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publication_datasources pd
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left outer join(
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select pd.id, 1 as is_gold FROM publication_datasources pd
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JOIN issn on issn.id=pd.datasource
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JOIN gold_oa on issn.issn = gold_oa.issn) tmp
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on pd.id=tmp.id;
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ANALYZE TABLE indi_pub_gold_oa COMPUTE STATISTICS;
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create table if not exists indi_pub_hybrid_oa_with_cc stored as parquet as
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WITH hybrid_oa AS (
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SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_print as issn
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FROM STATS_EXT.plan_s_jn
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WHERE issn_print != ""
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UNION ALL
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SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_online as issn
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FROM STATS_EXT.plan_s_jn
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WHERE issn_online != "" and (journal_is_in_doaj = FALSE OR journal_is_oa = FALSE)),
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issn AS (
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SELECT *
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FROM (
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SELECT id, issn_printed as issn
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FROM datasource
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WHERE issn_printed IS NOT NULL
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UNION ALL
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SELECT id,issn_online as issn
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FROM datasource
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WHERE issn_online IS NOT NULL ) as issn
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WHERE LENGTH(issn) > 7)
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SELECT DISTINCT pd.id, coalesce(is_hybrid_oa, 0) as is_hybrid_oa
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FROM publication_datasources pd
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LEFT OUTER JOIN (
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SELECT pd.id, 1 as is_hybrid_oa from publication_datasources pd
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JOIN datasource d on d.id=pd.datasource
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JOIN issn on issn.id=pd.datasource
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JOIN hybrid_oa ON issn.issn = hybrid_oa.issn
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JOIN indi_result_has_cc_licence cc on pd.id=cc.id
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JOIN indi_pub_gold_oa ga on pd.id=ga.id
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where cc.has_cc_license=1 and ga.is_gold=0) tmp on pd.id=tmp.id;
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ANALYZE TABLE indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
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create table if not exists indi_pub_bronze_oa stored as parquet as
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WITH hybrid_oa AS (
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SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_print as issn
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FROM STATS_EXT.plan_s_jn
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WHERE issn_print != ""
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UNION ALL
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SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_online as issn
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FROM STATS_EXT.plan_s_jn
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WHERE issn_online != "" and (journal_is_in_doaj = FALSE OR journal_is_oa = FALSE)),
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issn AS (
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SELECT *
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FROM (
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SELECT id, issn_printed as issn
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FROM datasource
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WHERE issn_printed IS NOT NULL
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UNION ALL
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SELECT id,issn_online as issn
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FROM datasource
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WHERE issn_online IS NOT NULL ) as issn
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WHERE LENGTH(issn) > 7)
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SELECT DISTINCT pd.id, coalesce(is_bronze_oa, 0) as is_hybrid_oa
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FROM publication_datasources pd
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LEFT OUTER JOIN (
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SELECT pd.id, 1 as is_bronze_oa from publication_datasources pd
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JOIN datasource d on d.id=pd.datasource
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JOIN issn on issn.id=pd.datasource
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JOIN hybrid_oa ON issn.issn = hybrid_oa.issn
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JOIN indi_result_has_cc_licence cc on pd.id=cc.id
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JOIN indi_pub_gold_oa ga on pd.id=ga.id
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JOIN indi_pub_hybrid_oa_with_cc hy on hy.id=pd.id
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where cc.has_cc_license=0 and ga.is_gold=0 and hy.is_hybrid_oa=0) tmp on pd.id=tmp.id;
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ANALYZE TABLE indi_pub_bronze_oa COMPUTE STATISTICS;
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create table if not exists indi_pub_hybrid stored as parquet as
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WITH gold_oa AS ( SELECT
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issn_l,
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journal_is_in_doaj,
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journal_is_oa,
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issn_1 as issn,
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has_apc
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FROM
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STATS_EXT.oa_journals
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WHERE
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issn_1 != ""
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UNION
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ALL SELECT
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issn_l,
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journal_is_in_doaj,
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journal_is_oa,
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issn_2 as issn,
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has_apc
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FROM
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STATS_EXT.oa_journals
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WHERE
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issn_2 != "" ), issn AS ( SELECT
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*
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FROM
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( SELECT
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id,
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issn_printed as issn
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FROM
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datasource
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WHERE
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issn_printed IS NOT NULL
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UNION ALL
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SELECT
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id,
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issn_online as issn
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FROM
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datasource
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WHERE
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issn_online IS NOT NULL or id like '%doajarticles%') as issn
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WHERE
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LENGTH(issn) > 7)
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select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid
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from publication_datasources pd
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left outer join (
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select pd.id, 1 as is_hybrid from publication_datasources pd
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join datasource d on d.id=pd.datasource
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join issn on issn.id=pd.datasource
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join gold_oa on issn.issn=gold_oa.issn
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where (gold_oa.journal_is_in_doaj=false or gold_oa.journal_is_oa=false))tmp
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on pd.id=tmp.id;
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ANALYZE TABLE indi_pub_hybrid COMPUTE STATISTICS;
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create table if not exists indi_org_fairness stored as parquet as
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--return results with PIDs, and rich metadata group by organization
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with result_fair as
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(select ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
|
|
join result r on r.id=ro.id
|
|
--join result_pids rp on r.id=rp.id
|
|
where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null) and (authors>0) and cast(year as int)>2003
|
|
group by ro.organization),
|
|
--return all results group by organization
|
|
allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
|
|
join result r on r.id=ro.id
|
|
where cast(year as int)>2003
|
|
group by organization)
|
|
--return results_fair/all_results
|
|
select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
|
|
from allresults
|
|
join result_fair on result_fair.organization=allresults.organization;
|
|
|
|
ANALYZE TABLE indi_org_fairness COMPUTE STATISTICS;
|
|
|
|
create table if not exists indi_org_fairness_pub_pr stored as parquet as
|
|
with result_fair as
|
|
(select ro.organization organization, count(distinct ro.id) no_result_fair
|
|
from result_organization ro
|
|
join publication p on p.id=ro.id
|
|
join indi_pub_doi_from_crossref dc on dc.id=p.id
|
|
join indi_pub_grey_lit gl on gl.id=p.id
|
|
where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null)
|
|
and (authors>0) and cast(year as int)>2003 and dc.doi_from_crossref=1 and gl.grey_lit=0
|
|
group by ro.organization),
|
|
allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
|
|
join publication p on p.id=ro.id
|
|
where cast(year as int)>2003
|
|
group by organization)
|
|
--return results_fair/all_results
|
|
select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
|
|
from allresults
|
|
join result_fair on result_fair.organization=allresults.organization;
|
|
|
|
ANALYZE TABLE indi_org_fairness_pub_pr COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY table result_fair as
|
|
select year, ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
|
|
join result p on p.id=ro.id
|
|
where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null) and (authors>0) and cast(year as int)>2003
|
|
group by ro.organization, year;
|
|
|
|
CREATE TEMPORARY TABLE allresults as select year, organization, count(distinct ro.id) no_allresults from result_organization ro
|
|
join result p on p.id=ro.id
|
|
where cast(year as int)>2003
|
|
group by organization, year;
|
|
|
|
create table if not exists indi_org_fairness_pub_year stored as parquet as
|
|
select allresults.year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
|
|
from allresults
|
|
join result_fair on result_fair.organization=allresults.organization and result_fair.year=allresults.year;
|
|
|
|
DROP table result_fair purge;
|
|
DROP table allresults purge;
|
|
|
|
ANALYZE TABLE indi_org_fairness_pub_year COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY TABLE result_fair as
|
|
select ro.organization organization, count(distinct ro.id) no_result_fair
|
|
from result_organization ro
|
|
join result p on p.id=ro.id
|
|
where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null)
|
|
and (authors>0) and cast(year as int)>2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE allresults as
|
|
select organization, count(distinct ro.id) no_allresults from result_organization ro
|
|
join result p on p.id=ro.id
|
|
where cast(year as int)>2003
|
|
group by organization;
|
|
|
|
create table if not exists indi_org_fairness_pub as
|
|
select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
|
|
from allresults join result_fair on result_fair.organization=allresults.organization;
|
|
|
|
DROP table result_fair purge;
|
|
DROP table allresults purge;
|
|
|
|
ANALYZE TABLE indi_org_fairness_pub COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY TABLE result_fair as
|
|
select year, ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
|
|
join result r on r.id=ro.id
|
|
join result_pids rp on r.id=rp.id
|
|
where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null) and (authors>0) and cast(year as int)>2003
|
|
group by ro.organization, year;
|
|
|
|
CREATE TEMPORARY TABLE allresults as
|
|
select year, organization, count(distinct ro.id) no_allresults from result_organization ro
|
|
join result r on r.id=ro.id
|
|
where cast(year as int)>2003
|
|
group by organization, year;
|
|
|
|
create table if not exists indi_org_fairness_year stored as parquet as
|
|
select allresults.year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
|
|
from allresults
|
|
join result_fair on result_fair.organization=allresults.organization and result_fair.year=allresults.year;
|
|
|
|
DROP table result_fair purge;
|
|
DROP table allresults purge;
|
|
|
|
ANALYZE TABLE indi_org_fairness_year COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY TABLE result_with_pid as
|
|
select year, ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
|
|
join result_pids rp on rp.id=ro.id
|
|
join result r on r.id=rp.id
|
|
where cast(year as int) >2003
|
|
group by ro.organization, year;
|
|
|
|
CREATE TEMPORARY TABLE allresults as
|
|
select year, organization, count(distinct ro.id) no_allresults from result_organization ro
|
|
join result r on r.id=ro.id
|
|
where cast(year as int) >2003
|
|
group by organization, year;
|
|
|
|
create table if not exists indi_org_findable_year stored as parquet as
|
|
select allresults.year, allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
|
|
from allresults
|
|
join result_with_pid on result_with_pid.organization=allresults.organization and result_with_pid.year=allresults.year;
|
|
|
|
DROP table result_with_pid purge;
|
|
DROP table allresults purge;
|
|
|
|
ANALYZE TABLE indi_org_findable_year COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY TABLE result_with_pid as
|
|
select ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
|
|
join result_pids rp on rp.id=ro.id
|
|
join result r on r.id=rp.id
|
|
where cast(year as int) >2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE allresults as
|
|
select organization, count(distinct ro.id) no_allresults from result_organization ro
|
|
join result r on r.id=ro.id
|
|
where cast(year as int) >2003
|
|
group by organization;
|
|
|
|
create table if not exists indi_org_findable stored as parquet as
|
|
select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
|
|
from allresults
|
|
join result_with_pid on result_with_pid.organization=allresults.organization;
|
|
|
|
DROP table result_with_pid purge;
|
|
DROP table allresults purge;
|
|
|
|
ANALYZE TABLE indi_org_findable COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY TABLE pubs_oa as
|
|
SELECT ro.organization, count(distinct r.id) no_oapubs FROM publication r
|
|
join result_organization ro on ro.id=r.id
|
|
join result_instance ri on ri.id=r.id
|
|
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
|
and cast(r.year as int)>2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE datasets_oa as
|
|
SELECT ro.organization, count(distinct r.id) no_oadatasets FROM dataset r
|
|
join result_organization ro on ro.id=r.id
|
|
join result_instance ri on ri.id=r.id
|
|
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
|
and cast(r.year as int)>2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE software_oa as
|
|
SELECT ro.organization, count(distinct r.id) no_oasoftware FROM software r
|
|
join result_organization ro on ro.id=r.id
|
|
join result_instance ri on ri.id=r.id
|
|
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
|
and cast(r.year as int)>2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE allpubs as
|
|
SELECT ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
|
|
join publication ps on ps.id=ro.id
|
|
where cast(ps.year as int)>2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE alldatasets as
|
|
SELECT ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
|
|
join dataset ps on ps.id=ro.id
|
|
where cast(ps.year as int)>2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE allsoftware as
|
|
SELECT ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
|
|
join software ps on ps.id=ro.id
|
|
where cast(ps.year as int)>2003
|
|
group by ro.organization;
|
|
|
|
CREATE TEMPORARY TABLE allpubsshare as
|
|
select pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
|
|
join pubs_oa on allpubs.organization=pubs_oa.organization;
|
|
|
|
CREATE TEMPORARY TABLE alldatasetssshare as
|
|
select datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
|
|
from alldatasets
|
|
join datasets_oa on alldatasets.organization=datasets_oa.organization;
|
|
|
|
CREATE TEMPORARY TABLE allsoftwaresshare as
|
|
select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
|
|
from allsoftware
|
|
join software_oa on allsoftware.organization=software_oa.organization;
|
|
|
|
create table if not exists indi_org_openess stored as parquet as
|
|
select allpubsshare.organization,
|
|
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
|
|
+(case when d is null then 0 else 1 end))
|
|
org_openess FROM allpubsshare
|
|
left outer join (select organization,d from
|
|
alldatasetssshare) tmp1
|
|
on tmp1.organization=allpubsshare.organization
|
|
left outer join (select organization,s from
|
|
allsoftwaresshare) tmp2
|
|
on tmp2.organization=allpubsshare.organization;
|
|
|
|
DROP TABLE pubs_oa purge;
|
|
DROP TABLE datasets_oa purge;
|
|
DROP TABLE software_oa purge;
|
|
DROP TABLE allpubs purge;
|
|
DROP TABLE alldatasets purge;
|
|
DROP TABLE allsoftware purge;
|
|
DROP TABLE allpubsshare purge;
|
|
DROP TABLE alldatasetssshare purge;
|
|
DROP TABLE allsoftwaresshare purge;
|
|
|
|
ANALYZE TABLE indi_org_openess COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY TABLE pubs_oa AS
|
|
SELECT r.year, ro.organization, count(distinct r.id) no_oapubs FROM publication r
|
|
join result_organization ro on ro.id=r.id
|
|
join result_instance ri on ri.id=r.id
|
|
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
|
and cast(r.year as int)>2003
|
|
group by ro.organization,r.year;
|
|
|
|
CREATE TEMPORARY TABLE datasets_oa AS
|
|
SELECT r.year,ro.organization, count(distinct r.id) no_oadatasets FROM dataset r
|
|
join result_organization ro on ro.id=r.id
|
|
join result_instance ri on ri.id=r.id
|
|
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
|
and cast(r.year as int)>2003
|
|
group by ro.organization, r.year;
|
|
|
|
CREATE TEMPORARY TABLE software_oa AS
|
|
SELECT r.year,ro.organization, count(distinct r.id) no_oasoftware FROM software r
|
|
join result_organization ro on ro.id=r.id
|
|
join result_instance ri on ri.id=r.id
|
|
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
|
and cast(r.year as int)>2003
|
|
group by ro.organization, r.year;
|
|
|
|
CREATE TEMPORARY TABLE allpubs as
|
|
SELECT p.year,ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
|
|
join publication p on p.id=ro.id where cast(p.year as int)>2003
|
|
group by ro.organization, p.year;
|
|
|
|
CREATE TEMPORARY TABLE alldatasets as
|
|
SELECT d.year, ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
|
|
join dataset d on d.id=ro.id where cast(d.year as int)>2003
|
|
group by ro.organization, d.year;
|
|
|
|
CREATE TEMPORARY TABLE allsoftware as
|
|
SELECT s.year,ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
|
|
join software s on s.id=ro.id where cast(s.year as int)>2003
|
|
group by ro.organization, s.year;
|
|
|
|
CREATE TEMPORARY TABLE allpubsshare as
|
|
select allpubs.year, pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
|
|
join pubs_oa on allpubs.organization=pubs_oa.organization where cast(allpubs.year as INT)=cast(pubs_oa.year as int);
|
|
|
|
CREATE TEMPORARY TABLE alldatasetssshare as
|
|
select alldatasets.year, datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
|
|
from alldatasets
|
|
join datasets_oa on alldatasets.organization=datasets_oa.organization where cast(alldatasets.year as INT)=cast(datasets_oa.year as int);
|
|
|
|
CREATE TEMPORARY TABLE allsoftwaresshare as
|
|
select allsoftware.year, software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
|
|
from allsoftware
|
|
join software_oa on allsoftware.organization=software_oa.organization where cast(allsoftware.year as INT)=cast(software_oa.year as int);
|
|
|
|
|
|
create table if not exists indi_org_openess_year stored as parquet as
|
|
select allpubsshare.year, allpubsshare.organization,
|
|
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
|
|
+(case when d is null then 0 else 1 end))
|
|
org_openess FROM allpubsshare
|
|
left outer join (select year, organization,d from
|
|
alldatasetssshare) tmp1
|
|
on tmp1.organization=allpubsshare.organization and tmp1.year=allpubsshare.year
|
|
left outer join (select year, organization,s from
|
|
allsoftwaresshare) tmp2
|
|
on tmp2.organization=allpubsshare.organization and tmp2.year=allpubsshare.year;
|
|
|
|
DROP TABLE pubs_oa purge;
|
|
DROP TABLE datasets_oa purge;
|
|
DROP TABLE software_oa purge;
|
|
DROP TABLE allpubs purge;
|
|
DROP TABLE alldatasets purge;
|
|
DROP TABLE allsoftware purge;
|
|
DROP TABLE allpubsshare purge;
|
|
DROP TABLE alldatasetssshare purge;
|
|
DROP TABLE allsoftwaresshare purge;
|
|
|
|
ANALYZE TABLE indi_org_openess_year COMPUTE STATISTICS;
|
|
|
|
create table if not exists indi_pub_has_preprint stored as parquet as
|
|
select distinct p.id, coalesce(has_preprint, 0) as has_preprint
|
|
from publication_classifications p
|
|
left outer join (
|
|
select p.id, 1 as has_preprint
|
|
from publication_classifications p
|
|
where p.type='Preprint') tmp
|
|
on p.id= tmp.id;
|
|
|
|
ANALYZE TABLE indi_pub_has_preprint COMPUTE STATISTICS;
|
|
|
|
create table if not exists indi_pub_in_subscribed stored as parquet as
|
|
select distinct p.id, coalesce(is_subscription, 0) as is_subscription
|
|
from publication p
|
|
left outer join(
|
|
select p.id, 1 as is_subscription from publication p
|
|
join indi_pub_gold_oa g on p.id=g.id
|
|
join indi_pub_hybrid h on p.id=h.id
|
|
join indi_pub_in_transformative t on p.id=t.id
|
|
where g.is_gold=0 and h.is_hybrid=0 and t.is_transformative=0) tmp
|
|
on p.id=tmp.id;
|
|
|
|
ANALYZE TABLE indi_pub_in_subscribed COMPUTE STATISTICS;
|
|
|
|
create table if not exists indi_result_with_pid as
|
|
select distinct p.id, coalesce(result_with_pid, 0) as result_with_pid
|
|
from result p
|
|
left outer join (
|
|
select p.id, 1 as result_with_pid
|
|
from result_pids p) tmp
|
|
on p.id= tmp.id;
|
|
|
|
ANALYZE TABLE indi_result_with_pid COMPUTE STATISTICS;
|
|
|
|
create table if not exists indi_impact_measures as
|
|
select distinct substr(id, 4), measures_ids.id impactmetric, measures_ids.unit.value[0] score,
|
|
cast(measures_ids.unit.value[0] as decimal(6,3)) score_dec, measures_ids.unit.value[1] class
|
|
from result lateral view explode(measures) measures as measures_ids
|
|
where measures_ids.id!='views' and measures_ids.id!='downloads';
|
|
|
|
ANALYZE TABLE indi_impact_measures COMPUTE STATISTICS;
|
|
|
|
CREATE TEMPORARY TABLE pub_fos_totals as
|
|
select rf.id, count(distinct lvl3) totals from result_fos rf
|
|
group by rf.id;
|
|
|
|
create table if not exists indi_pub_interdisciplinarity as
|
|
select distinct p.id, coalesce(indi_pub_is_interdisciplinary, 0)
|
|
as indi_pub_is_interdisciplinary
|
|
from pub_fos_totals p
|
|
left outer join (
|
|
select pub_fos_totals.id, 1 as indi_pub_is_interdisciplinary from pub_fos_totals
|
|
where totals>10) tmp on p.id=tmp.id;
|
|
|
|
drop table pub_fos_totals purge;
|
|
|
|
ANALYZE TABLE indi_pub_interdisciplinarity COMPUTE STATISTICS; |