package eu.dnetlib.dhp.actionmanager.createunresolvedentities; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import org.apache.commons.io.FileUtils; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.LocalFileSystem; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.FOSDataModel; /** * @author miriam.baglioni * @Date 13/02/23 */ public class GetFosTest { private static final Logger log = LoggerFactory.getLogger(ProduceTest.class); private static Path workingDir; private static SparkSession spark; private static LocalFileSystem fs; private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files.createTempDirectory(PrepareTest.class.getSimpleName()); fs = FileSystem.getLocal(new Configuration()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(ProduceTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(PrepareTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test @Disabled void test3() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/actionmanager/createunresolvedentities/fos/fos_sbs.tsv") .getPath(); final String outputPath = workingDir.toString() + "/fos.json"; GetFOSSparkJob .main( new String[] { "--isSparkSessionManaged", Boolean.FALSE.toString(), "--sourcePath", sourcePath, "-outputPath", outputPath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(outputPath) .map(item -> OBJECT_MAPPER.readValue(item, FOSDataModel.class)); tmp.foreach(t -> Assertions.assertTrue(t.getDoi() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getLevel1() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getLevel2() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getLevel3() != null)); } @Test void test4() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/actionmanager/createunresolvedentities/fos/fos_sbs2.csv") .getPath(); final String outputPath = workingDir.toString() + "/fos.json"; GetFOSSparkJob .main( new String[] { "--isSparkSessionManaged", Boolean.FALSE.toString(), "--sourcePath", sourcePath, "--delimiter", ",", "-outputPath", outputPath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(outputPath) .map(item -> OBJECT_MAPPER.readValue(item, FOSDataModel.class)); tmp.foreach(t -> Assertions.assertTrue(t.getDoi() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getLevel1() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getLevel2() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getLevel3() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getLevel4() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getScoreL3() != null)); tmp.foreach(t -> Assertions.assertTrue(t.getScoreL4() != null)); } }