package eu.dnetlib.dhp.actionmanager.bipfinder; import static org.junit.jupiter.api.Assertions.*; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import javax.xml.crypto.Data; import org.apache.commons.io.FileUtils; import org.apache.hadoop.io.Text; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.Row; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.schema.action.AtomicAction; import eu.dnetlib.dhp.schema.oaf.KeyValue; import eu.dnetlib.dhp.schema.oaf.OafEntity; import eu.dnetlib.dhp.schema.oaf.Project; import eu.dnetlib.dhp.schema.oaf.Result; public class SparkAtomicActionScoreJobTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory.getLogger(SparkAtomicActionScoreJobTest.class); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(SparkAtomicActionScoreJobTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(SparkAtomicActionScoreJobTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(SparkAtomicActionScoreJobTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } private void runJob(String resultsInputPath, String projectsInputPath, String outputPath) throws Exception { SparkAtomicActionScoreJob .main( new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-resultsInputPath", resultsInputPath, "-projectsInputPath", projectsInputPath, "-outputPath", outputPath, }); } @Test void testScores() throws Exception { String resultsInputPath = getClass() .getResource("/eu/dnetlib/dhp/actionmanager/bipfinder/result_bip_scores.json") .getPath(); String projectsInputPath = getClass() .getResource("/eu/dnetlib/dhp/actionmanager/bipfinder/project_bip_scores.json") .getPath(); String outputPath = workingDir.toString() + "/actionSet"; // execute the job to generate the action sets for result scores runJob(resultsInputPath, projectsInputPath, outputPath); final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext()); JavaRDD tmp = sc .sequenceFile(outputPath, Text.class, Text.class) .map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class)) .map(aa -> ((OafEntity) aa.getPayload())); assertEquals(8, tmp.count()); Dataset verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(OafEntity.class)); verificationDataset.createOrReplaceTempView("result"); Dataset testDataset = spark .sql( "Select p.id oaid, mes.id, mUnit.value from result p " + "lateral view explode(measures) m as mes " + "lateral view explode(mes.unit) u as mUnit "); // execVerification.show(); Assertions.assertEquals(28, testDataset.count()); assertResultImpactScores(testDataset); assertProjectImpactScores(testDataset); } void assertResultImpactScores(Dataset testDataset) { Assertions .assertEquals( "6.63451994567e-09", testDataset .filter( "oaid='50|arXiv_dedup_::4a2d5fd8d71daec016c176ec71d957b1' " + "and id = 'influence'") .select("value") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "0.348694533145", testDataset .filter( "oaid='50|arXiv_dedup_::4a2d5fd8d71daec016c176ec71d957b1' " + "and id = 'popularity_alt'") .select("value") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "2.16094680115e-09", testDataset .filter( "oaid='50|arXiv_dedup_::4a2d5fd8d71daec016c176ec71d957b1' " + "and id = 'popularity'") .select("value") .collectAsList() .get(0) .getString(0)); } void assertProjectImpactScores(Dataset testDataset) throws Exception { Assertions .assertEquals( "0", testDataset .filter( "oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " + "and id = 'numOfInfluentialResults'") .select("value") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "1", testDataset .filter( "oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " + "and id = 'numOfPopularResults'") .select("value") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "25", testDataset .filter( "oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " + "and id = 'totalImpulse'") .select("value") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "43", testDataset .filter( "oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " + "and id = 'totalCitationCount'") .select("value") .collectAsList() .get(0) .getString(0)); } }