package eu.dnetlib.dhp.oa.merge; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.Objects; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.common.HdfsSupport; import eu.dnetlib.dhp.schema.common.ModelSupport; public class DispatchEntitiesSparkJob { private static final Logger log = LoggerFactory.getLogger(DispatchEntitiesSparkJob.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( Objects .requireNonNull( DispatchEntitiesSparkJob.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/merge/dispatch_entities_parameters.json"))); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String inputPath = parser.get("inputPath"); log.info("inputPath: {}", inputPath); String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); boolean filterInvisible = Boolean.parseBoolean(parser.get("filterInvisible")); log.info("filterInvisible: {}", filterInvisible); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> dispatchEntities(spark, inputPath, outputPath, filterInvisible)); } private static void dispatchEntities( SparkSession spark, String inputPath, String outputPath, boolean filterInvisible) { Dataset df = spark.read().textFile(inputPath); ModelSupport.oafTypes.entrySet().parallelStream().forEach(entry -> { String entityType = entry.getKey(); Class clazz = entry.getValue(); final String entityPath = outputPath + "/" + entityType; if (!entityType.equalsIgnoreCase("relation")) { HdfsSupport.remove(entityPath, spark.sparkContext().hadoopConfiguration()); Dataset entityDF = spark .read() .schema(Encoders.bean(clazz).schema()) .json( df .filter((FilterFunction) s -> s.startsWith(clazz.getName())) .map( (MapFunction) s -> StringUtils.substringAfter(s, "|"), Encoders.STRING())); if (filterInvisible) { entityDF = entityDF.filter("dataInfo.invisible != true"); } entityDF .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(entityPath); } }); } }