forked from D-Net/dnet-hadoop
merged from master
This commit is contained in:
commit
b8e95295e2
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@ -0,0 +1,661 @@
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GNU AFFERO GENERAL PUBLIC LICENSE
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Version 3, 19 November 2007
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Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
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Everyone is permitted to copy and distribute verbatim copies
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Preamble
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|
||||
An "entity transaction" is a transaction transferring control of an
|
||||
organization, or substantially all assets of one, or subdividing an
|
||||
organization, or merging organizations. If propagation of a covered
|
||||
work results from an entity transaction, each party to that
|
||||
transaction who receives a copy of the work also receives whatever
|
||||
licenses to the work the party's predecessor in interest had or could
|
||||
give under the previous paragraph, plus a right to possession of the
|
||||
Corresponding Source of the work from the predecessor in interest, if
|
||||
the predecessor has it or can get it with reasonable efforts.
|
||||
|
||||
You may not impose any further restrictions on the exercise of the
|
||||
rights granted or affirmed under this License. For example, you may
|
||||
not impose a license fee, royalty, or other charge for exercise of
|
||||
rights granted under this License, and you may not initiate litigation
|
||||
(including a cross-claim or counterclaim in a lawsuit) alleging that
|
||||
any patent claim is infringed by making, using, selling, offering for
|
||||
sale, or importing the Program or any portion of it.
|
||||
|
||||
11. Patents.
|
||||
|
||||
A "contributor" is a copyright holder who authorizes use under this
|
||||
License of the Program or a work on which the Program is based. The
|
||||
work thus licensed is called the contributor's "contributor version".
|
||||
|
||||
A contributor's "essential patent claims" are all patent claims
|
||||
owned or controlled by the contributor, whether already acquired or
|
||||
hereafter acquired, that would be infringed by some manner, permitted
|
||||
by this License, of making, using, or selling its contributor version,
|
||||
but do not include claims that would be infringed only as a
|
||||
consequence of further modification of the contributor version. For
|
||||
purposes of this definition, "control" includes the right to grant
|
||||
patent sublicenses in a manner consistent with the requirements of
|
||||
this License.
|
||||
|
||||
Each contributor grants you a non-exclusive, worldwide, royalty-free
|
||||
patent license under the contributor's essential patent claims, to
|
||||
make, use, sell, offer for sale, import and otherwise run, modify and
|
||||
propagate the contents of its contributor version.
|
||||
|
||||
In the following three paragraphs, a "patent license" is any express
|
||||
agreement or commitment, however denominated, not to enforce a patent
|
||||
(such as an express permission to practice a patent or covenant not to
|
||||
sue for patent infringement). To "grant" such a patent license to a
|
||||
party means to make such an agreement or commitment not to enforce a
|
||||
patent against the party.
|
||||
|
||||
If you convey a covered work, knowingly relying on a patent license,
|
||||
and the Corresponding Source of the work is not available for anyone
|
||||
to copy, free of charge and under the terms of this License, through a
|
||||
publicly available network server or other readily accessible means,
|
||||
then you must either (1) cause the Corresponding Source to be so
|
||||
available, or (2) arrange to deprive yourself of the benefit of the
|
||||
patent license for this particular work, or (3) arrange, in a manner
|
||||
consistent with the requirements of this License, to extend the patent
|
||||
license to downstream recipients. "Knowingly relying" means you have
|
||||
actual knowledge that, but for the patent license, your conveying the
|
||||
covered work in a country, or your recipient's use of the covered work
|
||||
in a country, would infringe one or more identifiable patents in that
|
||||
country that you have reason to believe are valid.
|
||||
|
||||
If, pursuant to or in connection with a single transaction or
|
||||
arrangement, you convey, or propagate by procuring conveyance of, a
|
||||
covered work, and grant a patent license to some of the parties
|
||||
receiving the covered work authorizing them to use, propagate, modify
|
||||
or convey a specific copy of the covered work, then the patent license
|
||||
you grant is automatically extended to all recipients of the covered
|
||||
work and works based on it.
|
||||
|
||||
A patent license is "discriminatory" if it does not include within
|
||||
the scope of its coverage, prohibits the exercise of, or is
|
||||
conditioned on the non-exercise of one or more of the rights that are
|
||||
specifically granted under this License. You may not convey a covered
|
||||
work if you are a party to an arrangement with a third party that is
|
||||
in the business of distributing software, under which you make payment
|
||||
to the third party based on the extent of your activity of conveying
|
||||
the work, and under which the third party grants, to any of the
|
||||
parties who would receive the covered work from you, a discriminatory
|
||||
patent license (a) in connection with copies of the covered work
|
||||
conveyed by you (or copies made from those copies), or (b) primarily
|
||||
for and in connection with specific products or compilations that
|
||||
contain the covered work, unless you entered into that arrangement,
|
||||
or that patent license was granted, prior to 28 March 2007.
|
||||
|
||||
Nothing in this License shall be construed as excluding or limiting
|
||||
any implied license or other defenses to infringement that may
|
||||
otherwise be available to you under applicable patent law.
|
||||
|
||||
12. No Surrender of Others' Freedom.
|
||||
|
||||
If conditions are imposed on you (whether by court order, agreement or
|
||||
otherwise) that contradict the conditions of this License, they do not
|
||||
excuse you from the conditions of this License. If you cannot convey a
|
||||
covered work so as to satisfy simultaneously your obligations under this
|
||||
License and any other pertinent obligations, then as a consequence you may
|
||||
not convey it at all. For example, if you agree to terms that obligate you
|
||||
to collect a royalty for further conveying from those to whom you convey
|
||||
the Program, the only way you could satisfy both those terms and this
|
||||
License would be to refrain entirely from conveying the Program.
|
||||
|
||||
13. Remote Network Interaction; Use with the GNU General Public License.
|
||||
|
||||
Notwithstanding any other provision of this License, if you modify the
|
||||
Program, your modified version must prominently offer all users
|
||||
interacting with it remotely through a computer network (if your version
|
||||
supports such interaction) an opportunity to receive the Corresponding
|
||||
Source of your version by providing access to the Corresponding Source
|
||||
from a network server at no charge, through some standard or customary
|
||||
means of facilitating copying of software. This Corresponding Source
|
||||
shall include the Corresponding Source for any work covered by version 3
|
||||
of the GNU General Public License that is incorporated pursuant to the
|
||||
following paragraph.
|
||||
|
||||
Notwithstanding any other provision of this License, you have
|
||||
permission to link or combine any covered work with a work licensed
|
||||
under version 3 of the GNU General Public License into a single
|
||||
combined work, and to convey the resulting work. The terms of this
|
||||
License will continue to apply to the part which is the covered work,
|
||||
but the work with which it is combined will remain governed by version
|
||||
3 of the GNU General Public License.
|
||||
|
||||
14. Revised Versions of this License.
|
||||
|
||||
The Free Software Foundation may publish revised and/or new versions of
|
||||
the GNU Affero General Public License from time to time. Such new versions
|
||||
will be similar in spirit to the present version, but may differ in detail to
|
||||
address new problems or concerns.
|
||||
|
||||
Each version is given a distinguishing version number. If the
|
||||
Program specifies that a certain numbered version of the GNU Affero General
|
||||
Public License "or any later version" applies to it, you have the
|
||||
option of following the terms and conditions either of that numbered
|
||||
version or of any later version published by the Free Software
|
||||
Foundation. If the Program does not specify a version number of the
|
||||
GNU Affero General Public License, you may choose any version ever published
|
||||
by the Free Software Foundation.
|
||||
|
||||
If the Program specifies that a proxy can decide which future
|
||||
versions of the GNU Affero General Public License can be used, that proxy's
|
||||
public statement of acceptance of a version permanently authorizes you
|
||||
to choose that version for the Program.
|
||||
|
||||
Later license versions may give you additional or different
|
||||
permissions. However, no additional obligations are imposed on any
|
||||
author or copyright holder as a result of your choosing to follow a
|
||||
later version.
|
||||
|
||||
15. Disclaimer of Warranty.
|
||||
|
||||
THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
|
||||
APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
|
||||
HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
|
||||
OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
|
||||
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
|
||||
PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
|
||||
IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
|
||||
ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
|
||||
|
||||
16. Limitation of Liability.
|
||||
|
||||
IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
|
||||
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
|
||||
THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
|
||||
GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
|
||||
USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
|
||||
DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
|
||||
PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
|
||||
EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
|
||||
SUCH DAMAGES.
|
||||
|
||||
17. Interpretation of Sections 15 and 16.
|
||||
|
||||
If the disclaimer of warranty and limitation of liability provided
|
||||
above cannot be given local legal effect according to their terms,
|
||||
reviewing courts shall apply local law that most closely approximates
|
||||
an absolute waiver of all civil liability in connection with the
|
||||
Program, unless a warranty or assumption of liability accompanies a
|
||||
copy of the Program in return for a fee.
|
||||
|
||||
END OF TERMS AND CONDITIONS
|
||||
|
||||
How to Apply These Terms to Your New Programs
|
||||
|
||||
If you develop a new program, and you want it to be of the greatest
|
||||
possible use to the public, the best way to achieve this is to make it
|
||||
free software which everyone can redistribute and change under these terms.
|
||||
|
||||
To do so, attach the following notices to the program. It is safest
|
||||
to attach them to the start of each source file to most effectively
|
||||
state the exclusion of warranty; and each file should have at least
|
||||
the "copyright" line and a pointer to where the full notice is found.
|
||||
|
||||
<one line to give the program's name and a brief idea of what it does.>
|
||||
Copyright (C) <year> <name of author>
|
||||
|
||||
This program is free software: you can redistribute it and/or modify
|
||||
it under the terms of the GNU Affero General Public License as published by
|
||||
the Free Software Foundation, either version 3 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU Affero General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Affero General Public License
|
||||
along with this program. If not, see <http://www.gnu.org/licenses/>.
|
||||
|
||||
Also add information on how to contact you by electronic and paper mail.
|
||||
|
||||
If your software can interact with users remotely through a computer
|
||||
network, you should also make sure that it provides a way for users to
|
||||
get its source. For example, if your program is a web application, its
|
||||
interface could display a "Source" link that leads users to an archive
|
||||
of the code. There are many ways you could offer source, and different
|
||||
solutions will be better for different programs; see section 13 for the
|
||||
specific requirements.
|
||||
|
||||
You should also get your employer (if you work as a programmer) or school,
|
||||
if any, to sign a "copyright disclaimer" for the program, if necessary.
|
||||
For more information on this, and how to apply and follow the GNU AGPL, see
|
||||
<http://www.gnu.org/licenses/>.
|
||||
|
|
@ -12,6 +12,8 @@
|
|||
<artifactId>dhp-build-assembly-resources</artifactId>
|
||||
<packaging>jar</packaging>
|
||||
|
||||
<description>This module contains a set of scripts supporting the build lifecycle for the dnet-hadoop project</description>
|
||||
|
||||
<build>
|
||||
<plugins>
|
||||
<plugin>
|
||||
|
|
|
|||
|
|
@ -12,22 +12,29 @@
|
|||
<artifactId>dhp-build-properties-maven-plugin</artifactId>
|
||||
<packaging>maven-plugin</packaging>
|
||||
|
||||
<description>This module is a maven plugin implementing custom properties substitutions in the build lifecycle</description>
|
||||
|
||||
<dependencies>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven</groupId>
|
||||
<artifactId>maven-plugin-api</artifactId>
|
||||
<version>2.0</version>
|
||||
<version>3.6.3</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven</groupId>
|
||||
<artifactId>maven-project</artifactId>
|
||||
<version>2.0</version>
|
||||
<version>2.2.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven</groupId>
|
||||
<artifactId>maven-artifact</artifactId>
|
||||
<version>2.2.1</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.kuali.maven.plugins</groupId>
|
||||
<artifactId>properties-maven-plugin</artifactId>
|
||||
<version>1.3.2</version>
|
||||
<version>${properties.maven.plugin.version}</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>com.google.code.findbugs</groupId>
|
||||
|
|
@ -73,44 +80,10 @@
|
|||
<artifactId>maven-javadoc-plugin</artifactId>
|
||||
<configuration>
|
||||
<detectLinks>true</detectLinks>
|
||||
<doclint>none</doclint>
|
||||
</configuration>
|
||||
</plugin>
|
||||
</plugins>
|
||||
<pluginManagement>
|
||||
<plugins>
|
||||
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself.-->
|
||||
<plugin>
|
||||
<groupId>org.eclipse.m2e</groupId>
|
||||
<artifactId>lifecycle-mapping</artifactId>
|
||||
<version>1.0.0</version>
|
||||
<configuration>
|
||||
<lifecycleMappingMetadata>
|
||||
<pluginExecutions>
|
||||
<pluginExecution>
|
||||
<pluginExecutionFilter>
|
||||
<groupId>
|
||||
org.apache.maven.plugins
|
||||
</groupId>
|
||||
<artifactId>
|
||||
maven-plugin-plugin
|
||||
</artifactId>
|
||||
<versionRange>
|
||||
[3.2,)
|
||||
</versionRange>
|
||||
<goals>
|
||||
<goal>descriptor</goal>
|
||||
</goals>
|
||||
</pluginExecutionFilter>
|
||||
<action>
|
||||
<ignore />
|
||||
</action>
|
||||
</pluginExecution>
|
||||
</pluginExecutions>
|
||||
</lifecycleMappingMetadata>
|
||||
</configuration>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</pluginManagement>
|
||||
</build>
|
||||
|
||||
</project>
|
||||
|
|
|
|||
|
|
@ -40,7 +40,7 @@ import edu.umd.cs.findbugs.annotations.SuppressFBWarnings;
|
|||
|
||||
/**
|
||||
* Writes project properties for the keys listed in specified properties files. Based on:
|
||||
* http://site.kuali.org/maven/plugins/properties-maven-plugin/1.3.2/write-project-properties-mojo.html
|
||||
* http://site.kuali.org/maven/plugins/properties-maven-plugin/2.0.1/write-project-properties-mojo.html
|
||||
*
|
||||
* @author mhorst
|
||||
* @goal write-project-properties
|
||||
|
|
|
|||
|
|
@ -11,7 +11,7 @@ import org.junit.jupiter.api.Test;
|
|||
/** @author mhorst, claudio.atzori */
|
||||
public class GenerateOoziePropertiesMojoTest {
|
||||
|
||||
private GenerateOoziePropertiesMojo mojo = new GenerateOoziePropertiesMojo();
|
||||
private final GenerateOoziePropertiesMojo mojo = new GenerateOoziePropertiesMojo();
|
||||
|
||||
@BeforeEach
|
||||
public void clearSystemProperties() {
|
||||
|
|
|
|||
|
|
@ -366,7 +366,7 @@ public class WritePredefinedProjectPropertiesTest {
|
|||
}
|
||||
|
||||
private Properties getStoredProperties(File testFolder)
|
||||
throws FileNotFoundException, IOException {
|
||||
throws IOException {
|
||||
Properties properties = new Properties();
|
||||
properties.load(new FileInputStream(getPropertiesFileLocation(testFolder)));
|
||||
return properties;
|
||||
|
|
|
|||
|
|
@ -11,6 +11,38 @@
|
|||
|
||||
<packaging>jar</packaging>
|
||||
|
||||
<description>This module contains resources supporting common code style conventions</description>
|
||||
|
||||
<distributionManagement>
|
||||
<snapshotRepository>
|
||||
<id>dnet45-snapshots</id>
|
||||
<name>DNet45 Snapshots</name>
|
||||
<url>http://maven.research-infrastructures.eu/nexus/content/repositories/dnet45-snapshots</url>
|
||||
<layout>default</layout>
|
||||
</snapshotRepository>
|
||||
<repository>
|
||||
<id>dnet45-releases</id>
|
||||
<url>http://maven.research-infrastructures.eu/nexus/content/repositories/dnet45-releases</url>
|
||||
</repository>
|
||||
</distributionManagement>
|
||||
|
||||
<build>
|
||||
<pluginManagement>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-project-info-reports-plugin</artifactId>
|
||||
<version>3.0.0</version>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-site-plugin</artifactId>
|
||||
<version>3.7.1</version>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</pluginManagement>
|
||||
</build>
|
||||
|
||||
<properties>
|
||||
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
|
||||
</properties>
|
||||
|
|
|
|||
|
|
@ -8,6 +8,9 @@
|
|||
</parent>
|
||||
<artifactId>dhp-build</artifactId>
|
||||
<packaging>pom</packaging>
|
||||
|
||||
<description>This module is a container for the build tools used in dnet-hadoop</description>
|
||||
|
||||
<modules>
|
||||
<module>dhp-code-style</module>
|
||||
<module>dhp-build-assembly-resources</module>
|
||||
|
|
|
|||
|
|
@ -12,6 +12,8 @@
|
|||
<artifactId>dhp-common</artifactId>
|
||||
<packaging>jar</packaging>
|
||||
|
||||
<description>This module contains common utilities meant to be used across the dnet-hadoop submodules</description>
|
||||
|
||||
<dependencies>
|
||||
|
||||
<dependency>
|
||||
|
|
|
|||
|
|
@ -21,7 +21,7 @@ public class DHPUtils {
|
|||
public static String md5(final String s) {
|
||||
try {
|
||||
final MessageDigest md = MessageDigest.getInstance("MD5");
|
||||
md.update(s.getBytes("UTF-8"));
|
||||
md.update(s.getBytes(StandardCharsets.UTF_8));
|
||||
return new String(Hex.encodeHex(md.digest()));
|
||||
} catch (final Exception e) {
|
||||
System.err.println("Error creating id");
|
||||
|
|
|
|||
|
|
@ -17,7 +17,7 @@ public class NormalizeDate extends AbstractExtensionFunction {
|
|||
"yyyy-MM-dd'T'hh:mm:ss", "yyyy-MM-dd", "yyyy/MM/dd", "yyyy"
|
||||
};
|
||||
|
||||
private static final String normalizeOutFormat = new String("yyyy-MM-dd'T'hh:mm:ss'Z'");
|
||||
private static final String normalizeOutFormat = "yyyy-MM-dd'T'hh:mm:ss'Z'";
|
||||
|
||||
@Override
|
||||
public String getName() {
|
||||
|
|
|
|||
|
|
@ -21,7 +21,7 @@ public class MessageManager {
|
|||
|
||||
private Connection connection;
|
||||
|
||||
private Map<String, Channel> channels = new HashMap<>();
|
||||
private final Map<String, Channel> channels = new HashMap<>();
|
||||
|
||||
private boolean durable;
|
||||
|
||||
|
|
|
|||
|
|
@ -12,7 +12,7 @@
|
|||
<artifactId>dhp-schemas</artifactId>
|
||||
<packaging>jar</packaging>
|
||||
|
||||
|
||||
<description>This module contains common schema classes meant to be used across the dnet-hadoop submodules</description>
|
||||
|
||||
<dependencies>
|
||||
|
||||
|
|
|
|||
|
|
@ -16,7 +16,7 @@ public class AtomicActionDeserializer extends JsonDeserializer {
|
|||
|
||||
@Override
|
||||
public Object deserialize(JsonParser jp, DeserializationContext ctxt)
|
||||
throws IOException, JsonProcessingException {
|
||||
throws IOException {
|
||||
JsonNode node = jp.getCodec().readTree(jp);
|
||||
String classTag = node.get("clazz").asText();
|
||||
JsonNode payload = node.get("payload");
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@ import eu.dnetlib.dhp.schema.oaf.*;
|
|||
public class ModelSupport {
|
||||
|
||||
/** Defines the mapping between the actual entity type and the main entity type */
|
||||
private static Map<EntityType, MainEntityType> entityMapping = Maps.newHashMap();
|
||||
private static final Map<EntityType, MainEntityType> entityMapping = Maps.newHashMap();
|
||||
|
||||
static {
|
||||
entityMapping.put(EntityType.publication, MainEntityType.result);
|
||||
|
|
|
|||
|
|
@ -32,7 +32,7 @@ public class ISClient implements Serializable {
|
|||
|
||||
private static final String INPUT_ACTION_SET_ID_SEPARATOR = ",";
|
||||
|
||||
private ISLookUpService isLookup;
|
||||
private final ISLookUpService isLookup;
|
||||
|
||||
public ISClient(String isLookupUrl) {
|
||||
isLookup = ISLookupClientFactory.getLookUpService(isLookupUrl);
|
||||
|
|
|
|||
|
|
@ -123,10 +123,10 @@ public class PromoteActionPayloadFunctions {
|
|||
* @param <G> Type of graph table row
|
||||
*/
|
||||
public static class TableAggregator<G extends Oaf> extends Aggregator<G, G, G> {
|
||||
private SerializableSupplier<G> zeroFn;
|
||||
private SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn;
|
||||
private SerializableSupplier<Function<G, Boolean>> isNotZeroFn;
|
||||
private Class<G> rowClazz;
|
||||
private final SerializableSupplier<G> zeroFn;
|
||||
private final SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn;
|
||||
private final SerializableSupplier<Function<G, Boolean>> isNotZeroFn;
|
||||
private final Class<G> rowClazz;
|
||||
|
||||
public TableAggregator(
|
||||
SerializableSupplier<G> zeroFn,
|
||||
|
|
|
|||
|
|
@ -20,7 +20,7 @@ public class DnetCollectorWorkerApplication {
|
|||
|
||||
private static final Logger log = LoggerFactory.getLogger(DnetCollectorWorkerApplication.class);
|
||||
|
||||
private static CollectorPluginFactory collectorPluginFactory = new CollectorPluginFactory();
|
||||
private static final CollectorPluginFactory collectorPluginFactory = new CollectorPluginFactory();
|
||||
|
||||
private static ArgumentApplicationParser argumentParser;
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@ public class CollectorPluginErrorLogList extends LinkedList<String> {
|
|||
|
||||
@Override
|
||||
public String toString() {
|
||||
String log = new String();
|
||||
String log = "";
|
||||
int index = 0;
|
||||
for (final String errorMessage : this) {
|
||||
log += String.format("Retry #%s: %s / ", index++, errorMessage);
|
||||
|
|
|
|||
|
|
@ -11,22 +11,22 @@ import java.util.regex.Pattern;
|
|||
public class XmlCleaner {
|
||||
|
||||
/** Pattern for numeric entities. */
|
||||
private static Pattern validCharacterEntityPattern = Pattern.compile("^&#x?\\d{2,4};"); // $NON-NLS-1$
|
||||
private static final Pattern validCharacterEntityPattern = Pattern.compile("^&#x?\\d{2,4};"); // $NON-NLS-1$
|
||||
// private static Pattern validCharacterEntityPattern = Pattern.compile("^&#?\\d{2,4};");
|
||||
// //$NON-NLS-1$
|
||||
|
||||
// see https://www.w3.org/TR/REC-xml/#charsets , not only limited to 
|
||||
private static Pattern invalidControlCharPattern = Pattern.compile("&#x?1[0-9a-fA-F];");
|
||||
private static final Pattern invalidControlCharPattern = Pattern.compile("&#x?1[0-9a-fA-F];");
|
||||
|
||||
/**
|
||||
* Pattern that negates the allowable XML 4 byte unicode characters. Valid are: #x9 | #xA | #xD | [#x20-#xD7FF] |
|
||||
* [#xE000-#xFFFD] | [#x10000-#x10FFFF]
|
||||
*/
|
||||
private static Pattern invalidCharacterPattern = Pattern.compile("[^\t\r\n\u0020-\uD7FF\uE000-\uFFFD]"); // $NON-NLS-1$
|
||||
private static final Pattern invalidCharacterPattern = Pattern.compile("[^\t\r\n\u0020-\uD7FF\uE000-\uFFFD]"); // $NON-NLS-1$
|
||||
|
||||
// Map entities to their unicode equivalent
|
||||
private static Set<String> goodEntities = new HashSet<>();
|
||||
private static Map<String, String> badEntities = new HashMap<>();
|
||||
private static final Set<String> goodEntities = new HashSet<>();
|
||||
private static final Map<String, String> badEntities = new HashMap<>();
|
||||
|
||||
static {
|
||||
// pre-defined XML entities
|
||||
|
|
|
|||
|
|
@ -21,8 +21,8 @@ import eu.dnetlib.message.MessageManager;
|
|||
|
||||
public class DnetCollectorWorkerApplicationTests {
|
||||
|
||||
private ArgumentApplicationParser argumentParser = mock(ArgumentApplicationParser.class);
|
||||
private MessageManager messageManager = mock(MessageManager.class);
|
||||
private final ArgumentApplicationParser argumentParser = mock(ArgumentApplicationParser.class);
|
||||
private final MessageManager messageManager = mock(MessageManager.class);
|
||||
|
||||
private DnetCollectorWorker worker;
|
||||
|
||||
|
|
|
|||
|
|
@ -2,6 +2,7 @@
|
|||
package eu.dnetlib.dhp.oa.dedup;
|
||||
|
||||
import java.io.StringReader;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.security.MessageDigest;
|
||||
import java.text.Normalizer;
|
||||
import java.util.*;
|
||||
|
|
@ -73,7 +74,7 @@ public class DedupUtility {
|
|||
public static String md5(final String s) {
|
||||
try {
|
||||
final MessageDigest md = MessageDigest.getInstance("MD5");
|
||||
md.update(s.getBytes("UTF-8"));
|
||||
md.update(s.getBytes(StandardCharsets.UTF_8));
|
||||
return new String(Hex.encodeHex(md.digest()));
|
||||
} catch (final Exception e) {
|
||||
System.err.println("Error creating id");
|
||||
|
|
|
|||
|
|
@ -15,7 +15,7 @@ public class SparkReporter implements Serializable, Reporter {
|
|||
|
||||
private final List<Tuple2<String, String>> relations = new ArrayList<>();
|
||||
|
||||
private Map<String, LongAccumulator> accumulators;
|
||||
private final Map<String, LongAccumulator> accumulators;
|
||||
|
||||
public SparkReporter(Map<String, LongAccumulator> accumulators) {
|
||||
this.accumulators = accumulators;
|
||||
|
|
|
|||
|
|
@ -106,7 +106,7 @@ public class DedupUtility {
|
|||
public static String md5(final String s) {
|
||||
try {
|
||||
final MessageDigest md = MessageDigest.getInstance("MD5");
|
||||
md.update(s.getBytes("UTF-8"));
|
||||
md.update(s.getBytes(StandardCharsets.UTF_8));
|
||||
return new String(Hex.encodeHex(md.digest()));
|
||||
} catch (final Exception e) {
|
||||
System.err.println("Error creating id");
|
||||
|
|
|
|||
|
|
@ -410,14 +410,10 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
|
||||
final String identifier = n.valueOf("./*[local-name()='identifier']");
|
||||
final String baseURL = n.valueOf("./*[local-name()='baseURL']");
|
||||
;
|
||||
final String metadataNamespace = n.valueOf("./*[local-name()='metadataNamespace']");
|
||||
;
|
||||
final boolean altered = n.valueOf("@altered").equalsIgnoreCase("true");
|
||||
final String datestamp = n.valueOf("./*[local-name()='datestamp']");
|
||||
;
|
||||
final String harvestDate = n.valueOf("@harvestDate");
|
||||
;
|
||||
|
||||
return oaiIProvenance(identifier, baseURL, metadataNamespace, altered, datestamp, harvestDate);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -51,7 +51,7 @@ import eu.dnetlib.dhp.schema.oaf.Software;
|
|||
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||
|
||||
public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
||||
implements Closeable {
|
||||
implements Closeable {
|
||||
|
||||
private static final Log log = LogFactory.getLog(MigrateDbEntitiesApplication.class);
|
||||
|
||||
|
|
@ -61,11 +61,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
public static void main(final String[] args) throws Exception {
|
||||
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
|
||||
IOUtils
|
||||
.toString(
|
||||
MigrateDbEntitiesApplication.class
|
||||
.getResourceAsStream(
|
||||
"/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
|
||||
IOUtils
|
||||
.toString(MigrateDbEntitiesApplication.class
|
||||
.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
|
||||
|
||||
parser.parseArgument(args);
|
||||
|
||||
|
|
@ -78,7 +76,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final boolean processClaims = parser.get("action") != null && parser.get("action").equalsIgnoreCase("claims");
|
||||
|
||||
try (final MigrateDbEntitiesApplication smdbe = new MigrateDbEntitiesApplication(hdfsPath, dbUrl, dbUser,
|
||||
dbPassword)) {
|
||||
dbPassword)) {
|
||||
if (processClaims) {
|
||||
log.info("Processing claims...");
|
||||
smdbe.execute("queryClaims.sql", smdbe::processClaims);
|
||||
|
|
@ -109,15 +107,15 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
}
|
||||
|
||||
public MigrateDbEntitiesApplication(
|
||||
final String hdfsPath, final String dbUrl, final String dbUser, final String dbPassword)
|
||||
throws Exception {
|
||||
final String hdfsPath, final String dbUrl, final String dbUser, final String dbPassword)
|
||||
throws Exception {
|
||||
super(hdfsPath);
|
||||
this.dbClient = new DbClient(dbUrl, dbUser, dbPassword);
|
||||
this.lastUpdateTimestamp = new Date().getTime();
|
||||
}
|
||||
|
||||
public void execute(final String sqlFile, final Function<ResultSet, List<Oaf>> producer)
|
||||
throws Exception {
|
||||
throws Exception {
|
||||
final String sql = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/sql/" + sqlFile));
|
||||
|
||||
final Consumer<ResultSet> consumer = rs -> producer.apply(rs).forEach(oaf -> emitOaf(oaf));
|
||||
|
|
@ -136,10 +134,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
ds.setId(createOpenaireId(10, rs.getString("datasourceid"), true));
|
||||
ds.setOriginalId(Arrays.asList(rs.getString("datasourceid")));
|
||||
ds
|
||||
.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
ds.setPid(new ArrayList<>());
|
||||
ds.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
ds.setDateoftransformation(null); // Value not returned by the SQL query
|
||||
|
|
@ -180,8 +175,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
ds.setCertificates(field(rs.getString("certificates"), info));
|
||||
ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array
|
||||
ds
|
||||
.setJournal(
|
||||
prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
|
||||
.setJournal(prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
|
||||
ds.setDataInfo(info);
|
||||
ds.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
|
||||
|
|
@ -201,10 +195,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
p.setId(createOpenaireId(40, rs.getString("projectid"), true));
|
||||
p.setOriginalId(Arrays.asList(rs.getString("projectid")));
|
||||
p
|
||||
.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
p.setPid(new ArrayList<>());
|
||||
p.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
p.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
|
||||
|
|
@ -221,8 +212,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
p.setDuration(field(Integer.toString(rs.getInt("duration")), info));
|
||||
p.setEcsc39(field(Boolean.toString(rs.getBoolean("ecsc39")), info));
|
||||
p
|
||||
.setOamandatepublications(
|
||||
field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
|
||||
.setOamandatepublications(field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
|
||||
p.setEcarticle29_3(field(Boolean.toString(rs.getBoolean("ecarticle29_3")), info));
|
||||
p.setSubjects(prepareListOfStructProps(rs.getArray("subjects"), info));
|
||||
p.setFundingtree(prepareListFields(rs.getArray("fundingtree"), info));
|
||||
|
|
@ -259,10 +249,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
o.setId(createOpenaireId(20, rs.getString("organizationid"), true));
|
||||
o.setOriginalId(Arrays.asList(rs.getString("organizationid")));
|
||||
o
|
||||
.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
o.setPid(new ArrayList<>());
|
||||
o.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
o.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
|
||||
|
|
@ -277,15 +264,12 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
o.setEclegalperson(field(Boolean.toString(rs.getBoolean("eclegalperson")), info));
|
||||
o.setEcnonprofit(field(Boolean.toString(rs.getBoolean("ecnonprofit")), info));
|
||||
o
|
||||
.setEcresearchorganization(
|
||||
field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
|
||||
.setEcresearchorganization(field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
|
||||
o.setEchighereducation(field(Boolean.toString(rs.getBoolean("echighereducation")), info));
|
||||
o
|
||||
.setEcinternationalorganizationeurinterests(
|
||||
field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
|
||||
.setEcinternationalorganizationeurinterests(field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
|
||||
o
|
||||
.setEcinternationalorganization(
|
||||
field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
|
||||
.setEcinternationalorganization(field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
|
||||
o.setEcenterprise(field(Boolean.toString(rs.getBoolean("ecenterprise")), info));
|
||||
o.setEcsmevalidated(field(Boolean.toString(rs.getBoolean("ecsmevalidated")), info));
|
||||
o.setEcnutscode(field(Boolean.toString(rs.getBoolean("ecnutscode")), info));
|
||||
|
|
@ -304,9 +288,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final DataInfo info = prepareDataInfo(rs);
|
||||
final String orgId = createOpenaireId(20, rs.getString("organization"), true);
|
||||
final String dsId = createOpenaireId(10, rs.getString("datasource"), true);
|
||||
final List<KeyValue> collectedFrom = listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname"));
|
||||
final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("datasourceOrganization");
|
||||
|
|
@ -339,9 +321,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final DataInfo info = prepareDataInfo(rs);
|
||||
final String orgId = createOpenaireId(20, rs.getString("resporganization"), true);
|
||||
final String projectId = createOpenaireId(40, rs.getString("project"), true);
|
||||
final List<KeyValue> collectedFrom = listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname"));
|
||||
final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("projectOrganization");
|
||||
|
|
@ -371,17 +351,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
public List<Oaf> processClaims(final ResultSet rs) {
|
||||
|
||||
final DataInfo info = dataInfo(
|
||||
false,
|
||||
null,
|
||||
false,
|
||||
false,
|
||||
qualifier(
|
||||
"user:claim", "user:claim", "dnet:provenanceActions", "dnet:provenanceActions"),
|
||||
"0.9");
|
||||
final DataInfo info =
|
||||
dataInfo(false, null, false, false, qualifier("user:claim", "user:claim", "dnet:provenanceActions", "dnet:provenanceActions"), "0.9");
|
||||
|
||||
final List<KeyValue> collectedFrom = listKeyValues(
|
||||
createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
|
||||
final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
|
||||
|
||||
try {
|
||||
|
||||
|
|
@ -467,19 +440,11 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final String inferenceprovenance = rs.getString("inferenceprovenance");
|
||||
final Boolean inferred = rs.getBoolean("inferred");
|
||||
final String trust = rs.getString("trust");
|
||||
return dataInfo(
|
||||
deletedbyinference,
|
||||
inferenceprovenance,
|
||||
inferred,
|
||||
false,
|
||||
MigrationConstants.ENTITYREGISTRY_PROVENANCE_ACTION,
|
||||
trust);
|
||||
return dataInfo(deletedbyinference, inferenceprovenance, inferred, false, MigrationConstants.ENTITYREGISTRY_PROVENANCE_ACTION, trust);
|
||||
}
|
||||
|
||||
private Qualifier prepareQualifierSplitting(final String s) {
|
||||
if (StringUtils.isBlank(s)) {
|
||||
return null;
|
||||
}
|
||||
if (StringUtils.isBlank(s)) { return null; }
|
||||
final String[] arr = s.split("@@@");
|
||||
return arr.length == 4 ? qualifier(arr[0], arr[1], arr[2], arr[3]) : null;
|
||||
}
|
||||
|
|
@ -493,22 +458,19 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
}
|
||||
|
||||
private StructuredProperty prepareStructProp(final String s, final DataInfo dataInfo) {
|
||||
if (StringUtils.isBlank(s)) {
|
||||
return null;
|
||||
}
|
||||
if (StringUtils.isBlank(s)) { return null; }
|
||||
final String[] parts = s.split("###");
|
||||
if (parts.length == 2) {
|
||||
final String value = parts[0];
|
||||
final String[] arr = parts[1].split("@@@");
|
||||
if (arr.length == 4) {
|
||||
return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo);
|
||||
}
|
||||
if (arr.length == 4) { return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo); }
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
private List<StructuredProperty> prepareListOfStructProps(
|
||||
final Array array, final DataInfo dataInfo) throws SQLException {
|
||||
final Array array,
|
||||
final DataInfo dataInfo) throws SQLException {
|
||||
final List<StructuredProperty> res = new ArrayList<>();
|
||||
if (array != null) {
|
||||
for (final String s : (String[]) array.getArray()) {
|
||||
|
|
@ -526,11 +488,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
if (StringUtils.isNotBlank(sj)) {
|
||||
final String[] arr = sj.split("@@@");
|
||||
if (arr.length == 3) {
|
||||
final String issn = StringUtils.isNotBlank(arr[0]) ? arr[0] : null;
|
||||
final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1] : null;
|
||||
;
|
||||
final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2] : null;
|
||||
;
|
||||
final String issn = StringUtils.isNotBlank(arr[0]) ? arr[0].trim() : null;
|
||||
final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1].trim() : null;;
|
||||
final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2].trim() : null;;
|
||||
if (issn != null || eissn != null || lissn != null) {
|
||||
return journal(name, issn, eissn, eissn, null, null, null, null, null, null, null, info);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -14,7 +14,7 @@ public class DbClient implements Closeable {
|
|||
|
||||
private static final Log log = LogFactory.getLog(DbClient.class);
|
||||
|
||||
private Connection connection;
|
||||
private final Connection connection;
|
||||
|
||||
public DbClient(final String address, final String login, final String password) {
|
||||
|
||||
|
|
|
|||
|
|
@ -2,6 +2,7 @@
|
|||
package eu.dnetlib.dhp.oa.graph.raw.common;
|
||||
|
||||
import java.nio.charset.Charset;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.text.Normalizer;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
|
|
@ -141,7 +142,7 @@ public class PacePerson {
|
|||
public String hash() {
|
||||
return Hashing
|
||||
.murmur3_128()
|
||||
.hashString(getNormalisedFullname(), Charset.forName(UTF8))
|
||||
.hashString(getNormalisedFullname(), StandardCharsets.UTF_8)
|
||||
.toString();
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -25,7 +25,7 @@ public abstract class AbstractScholexplorerParser {
|
|||
|
||||
protected static final Log log = LogFactory.getLog(AbstractScholexplorerParser.class);
|
||||
static final Pattern pattern = Pattern.compile("10\\.\\d{4,9}/[-._;()/:A-Z0-9]+$", Pattern.CASE_INSENSITIVE);
|
||||
private List<String> datasetSubTypes = Arrays
|
||||
private final List<String> datasetSubTypes = Arrays
|
||||
.asList(
|
||||
"dataset",
|
||||
"software",
|
||||
|
|
|
|||
|
|
@ -108,7 +108,7 @@ SELECT
|
|||
ELSE 'Other'
|
||||
END || '@@@dnet:datasource_typologies@@@dnet:datasource_typologies' AS datasourcetype,
|
||||
'sysimport:crosswalk:entityregistry@@@sysimport:crosswalk:entityregistry@@@dnet:provenance_actions@@@dnet:provenance_actions' AS provenanceaction,
|
||||
CONCAT(d.issn, '@@@', d.eissn, '@@@', d.lissn) AS journal
|
||||
CONCAT(d.issn, ' @@@ ', d.eissn, ' @@@ ', d.lissn) AS journal
|
||||
|
||||
FROM dsm_datasources d
|
||||
|
||||
|
|
|
|||
|
|
@ -18,7 +18,7 @@ import eu.dnetlib.dhp.utils.DHPUtils;
|
|||
|
||||
public class CrossRefParserJSON {
|
||||
|
||||
private static List<ScholixCollectedFrom> collectedFrom = generateCrossrefCollectedFrom("complete");
|
||||
private static final List<ScholixCollectedFrom> collectedFrom = generateCrossrefCollectedFrom("complete");
|
||||
|
||||
public static ScholixResource parseRecord(final String record) {
|
||||
if (record == null)
|
||||
|
|
|
|||
|
|
@ -16,7 +16,7 @@ public class DataciteClient {
|
|||
private String host;
|
||||
private String index = "datacite";
|
||||
private String indexType = "dump";
|
||||
private Datacite2Scholix d2s;
|
||||
private final Datacite2Scholix d2s;
|
||||
|
||||
public DataciteClient(String host) {
|
||||
this.host = host;
|
||||
|
|
|
|||
|
|
@ -12,7 +12,7 @@ import eu.dnetlib.dhp.oa.provision.model.SortableRelation;
|
|||
*/
|
||||
public class RelationPartitioner extends Partitioner {
|
||||
|
||||
private int numPartitions;
|
||||
private final int numPartitions;
|
||||
|
||||
public RelationPartitioner(int numPartitions) {
|
||||
this.numPartitions = numPartitions;
|
||||
|
|
|
|||
|
|
@ -46,7 +46,7 @@ public class StreamingInputDocumentFactory {
|
|||
|
||||
private static final String INDEX_RECORD_ID = INDEX_FIELD_PREFIX + "indexrecordidentifier";
|
||||
|
||||
private static final String outFormat = new String("yyyy-MM-dd'T'hh:mm:ss'Z'");
|
||||
private static final String outFormat = "yyyy-MM-dd'T'hh:mm:ss'Z'";
|
||||
|
||||
private static final List<String> dateFormats = Arrays
|
||||
.asList("yyyy-MM-dd'T'hh:mm:ss", "yyyy-MM-dd", "dd-MM-yyyy", "dd/MM/yyyy", "yyyy");
|
||||
|
|
@ -61,15 +61,18 @@ public class StreamingInputDocumentFactory {
|
|||
|
||||
private static final int MAX_FIELD_LENGTH = 25000;
|
||||
|
||||
private ThreadLocal<XMLInputFactory> inputFactory = ThreadLocal.withInitial(() -> XMLInputFactory.newInstance());
|
||||
private final ThreadLocal<XMLInputFactory> inputFactory = ThreadLocal
|
||||
.withInitial(() -> XMLInputFactory.newInstance());
|
||||
|
||||
private ThreadLocal<XMLOutputFactory> outputFactory = ThreadLocal.withInitial(() -> XMLOutputFactory.newInstance());
|
||||
private final ThreadLocal<XMLOutputFactory> outputFactory = ThreadLocal
|
||||
.withInitial(() -> XMLOutputFactory.newInstance());
|
||||
|
||||
private ThreadLocal<XMLEventFactory> eventFactory = ThreadLocal.withInitial(() -> XMLEventFactory.newInstance());
|
||||
private final ThreadLocal<XMLEventFactory> eventFactory = ThreadLocal
|
||||
.withInitial(() -> XMLEventFactory.newInstance());
|
||||
|
||||
private String version;
|
||||
private final String version;
|
||||
|
||||
private String dsId;
|
||||
private final String dsId;
|
||||
|
||||
private String resultName = DEFAULTDNETRESULT;
|
||||
|
||||
|
|
|
|||
|
|
@ -17,7 +17,7 @@ import eu.dnetlib.dhp.schema.oaf.OafEntity;
|
|||
|
||||
public class TemplateFactory {
|
||||
|
||||
private TemplateResources resources;
|
||||
private final TemplateResources resources;
|
||||
|
||||
private static final char DELIMITER = '$';
|
||||
|
||||
|
|
|
|||
|
|
@ -8,17 +8,17 @@ import com.google.common.io.Resources;
|
|||
|
||||
public class TemplateResources {
|
||||
|
||||
private String record = read("eu/dnetlib/dhp/oa/provision/template/record.st");
|
||||
private final String record = read("eu/dnetlib/dhp/oa/provision/template/record.st");
|
||||
|
||||
private String instance = read("eu/dnetlib/dhp/oa/provision/template/instance.st");
|
||||
private final String instance = read("eu/dnetlib/dhp/oa/provision/template/instance.st");
|
||||
|
||||
private String rel = read("eu/dnetlib/dhp/oa/provision/template/rel.st");
|
||||
private final String rel = read("eu/dnetlib/dhp/oa/provision/template/rel.st");
|
||||
|
||||
private String webresource = read("eu/dnetlib/dhp/oa/provision/template/webresource.st");
|
||||
private final String webresource = read("eu/dnetlib/dhp/oa/provision/template/webresource.st");
|
||||
|
||||
private String child = read("eu/dnetlib/dhp/oa/provision/template/child.st");
|
||||
private final String child = read("eu/dnetlib/dhp/oa/provision/template/child.st");
|
||||
|
||||
private String entity = read("eu/dnetlib/dhp/oa/provision/template/entity.st");
|
||||
private final String entity = read("eu/dnetlib/dhp/oa/provision/template/entity.st");
|
||||
|
||||
private static String read(final String classpathResource) throws IOException {
|
||||
return Resources.toString(Resources.getResource(classpathResource), StandardCharsets.UTF_8);
|
||||
|
|
|
|||
|
|
@ -48,13 +48,13 @@ import eu.dnetlib.dhp.schema.oaf.Result;
|
|||
public class XmlRecordFactory implements Serializable {
|
||||
|
||||
public static final String REL_SUBTYPE_DEDUP = "dedup";
|
||||
private Map<String, LongAccumulator> accumulators;
|
||||
private final Map<String, LongAccumulator> accumulators;
|
||||
|
||||
private Set<String> specialDatasourceTypes;
|
||||
private final Set<String> specialDatasourceTypes;
|
||||
|
||||
private ContextMapper contextMapper;
|
||||
private final ContextMapper contextMapper;
|
||||
|
||||
private String schemaLocation;
|
||||
private final String schemaLocation;
|
||||
|
||||
private boolean indent = false;
|
||||
|
||||
|
|
|
|||
|
|
@ -41,7 +41,7 @@ public class XmlSerializationUtils {
|
|||
|
||||
public static String mapStructuredProperty(String name, StructuredProperty t) {
|
||||
return asXmlElement(
|
||||
name, t.getValue(), t.getQualifier(), t.getDataInfo() != null ? t.getDataInfo() : null);
|
||||
name, t.getValue(), t.getQualifier(), t.getDataInfo());
|
||||
}
|
||||
|
||||
public static String mapQualifier(String name, Qualifier q) {
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@ import org.junit.jupiter.api.BeforeEach;
|
|||
|
||||
public class GraphJoinerTest {
|
||||
|
||||
private ClassLoader cl = getClass().getClassLoader();
|
||||
private final ClassLoader cl = getClass().getClassLoader();
|
||||
private Path workingDir;
|
||||
private Path inputDir;
|
||||
private Path outputDir;
|
||||
|
|
|
|||
|
|
@ -22,6 +22,7 @@
|
|||
<plugin>
|
||||
<groupId>pl.project13.maven</groupId>
|
||||
<artifactId>git-commit-id-plugin</artifactId>
|
||||
<version>2.1.11</version>
|
||||
<configuration>
|
||||
<failOnNoGitDirectory>false</failOnNoGitDirectory>
|
||||
</configuration>
|
||||
|
|
|
|||
Some files were not shown because too many files have changed in this diff Show More
Loading…
Reference in New Issue