dimitris.pierrakos
/
dnet-hadoop
forked from D-Net/dnet-hadoop
1
0
Fork 0
Code Pull Requests Activity

Adding more relations (Sources, Licences, Additional) and shadow schema as provided and discussed with Antonis Lempesis

This commit is contained in:
Spyros Zoupanos 2020-06-15 19:57:40 +03:00
parent 657a40536b
commit adf8a025d2
18 changed files with 670 additions and 321 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

13
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step1.sql
View File

@ -1,11 +1,8 @@
-- DROP database if EXISTS ${hive_db_name} cascade; --------------------------------------------------------------
-- CREATE database ${hive_db_name}; --------------------------------------------------------------
-- -- Stats database creation
-- CREATE TABLE ${hive_db_name}.Persons ( --------------------------------------------------------------
-- PersonID int, --------------------------------------------------------------
-- LastName varchar(255));
--
-- INSERT INTO ${hive_db_name}.Persons VALUES (1, "test_db_spyros_rec_111");
DROP database IF EXISTS ${stats_db_name} CASCADE; DROP database IF EXISTS ${stats_db_name} CASCADE;
CREATE database ${stats_db_name}; CREATE database ${stats_db_name};

21
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
View File

@ -1,11 +1,10 @@
---------------------------------------------------------------- ------------------------------------------------------------------------------------------------
---------------------------------------------------------------- ------------------------------------------------------------------------------------------------
-- Organization table/view and Organization related tables/views -- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
---------------------------------------------------------------- ------------------------------------------------------------------------------------------------
---------------------------------------------------------------- ------------------------------------------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.organization; CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
CREATE TABLE ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value AS name, o.country.classid AS country FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=false; CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations; CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;

54
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql
View File

@ -1,10 +1,44 @@
------------------------------------------------------------------------------------------------ ----------------------------------------------------------------
------------------------------------------------------------------------------------------------ ----------------------------------------------------------------
-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture) -- Post processing - Updates on main tables
------------------------------------------------------------------------------------------------ ----------------------------------------------------------------
------------------------------------------------------------------------------------------------ ----------------------------------------------------------------
CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country; --Datasource temporary table updates
CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp; UPDATE ${stats_db_name}.datasource_tmp SET harvested='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd WHERE d.id=rd.datasource);
CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture; -- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
DROP TABLE IF EXISTS ${stats_db_name}.project;
CREATE TABLE ${stats_db_name}.project stored as parquet as
SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
p.callidentifier, p.code
FROM ${stats_db_name}.project_tmp p
LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id
WHERE r.type='publication'
GROUP BY pr.id) AS prr1 on prr1.id = p.id
LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) AS daysForlastPub , count(distinct r.id) AS dp
FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r
WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
GROUP BY pp.id) AS prr2
ON prr2.id = p.id;
-- Publication temporary table updates
UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
-- Dataset temporary table updates
UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
-- Software temporary table updates
UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
-- Oherresearchproduct temporary table updates
UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend AS daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id AND result.type='publication' AND project.id=result_projects.project;

64
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql
View File

@ -1,42 +1,38 @@
---------------------------- ------------------------------------------------------------------------------------------------------
-- Post processing - Updates -- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
---------------------------- ------------------------------------------------------------------------------------------------------
--Datasource temporary table updates DROP TABLE IF EXISTS ${stats_db_name}.datasource;
UPDATE ${stats_db_name}.datasource_tmp SET harvested='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd WHERE d.id=rd.datasource); CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS SELECT * FROM ${stats_db_name}.datasource_tmp;
-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables DROP TABLE IF EXISTS ${stats_db_name}.publication;
UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication'); CREATE TABLE ${stats_db_name}.publication stored AS parquet AS SELECT * FROM ${stats_db_name}.publication_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.project; DROP TABLE IF EXISTS ${stats_db_name}.dataset;
CREATE TABLE ${stats_db_name}.project stored as parquet as CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS SELECT * FROM ${stats_db_name}.dataset_tmp;
SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
p.callidentifier, p.code
FROM ${stats_db_name}.project_tmp p
LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id
WHERE r.type='publication'
GROUP BY pr.id) AS prr1 on prr1.id = p.id
LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) AS daysForlastPub , count(distinct r.id) AS dp
FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r
WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
GROUP BY pp.id) AS prr2
ON prr2.id = p.id;
-- Publication temporary table updates DROP TABLE IF EXISTS ${stats_db_name}.software;
UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); CREATE TABLE ${stats_db_name}.software stored AS parquet AS SELECT * FROM ${stats_db_name}.software_tmp;
-- Dataset temporary table updates DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS SELECT * FROM ${stats_db_name}.otherresearchproduct_tmp;
-- Software temporary table updates DROP TABLE ${stats_db_name}.project_tmp;
UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); DROP TABLE ${stats_db_name}.datasource_tmp;
DROP TABLE ${stats_db_name}.publication_tmp;
DROP TABLE ${stats_db_name}.dataset_tmp;
DROP TABLE ${stats_db_name}.software_tmp;
DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
-- Oherresearchproduct temporary table updates ----------------------------------------------
UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); -- Re-creating views from final parquet tables
---------------------------------------------
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend AS daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id AND result.type='publication' AND project.id=result_projects.project; -- Result
CREATE OR REPLACE VIEW ${stats_db_name}.result AS SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct;
-------------------------------------------------------------------------------
-- To see with Antonis if the following is needed and where it should be placed
-------------------------------------------------------------------------------
CREATE TABLE ${stats_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${stats_db_name}.result r, ${stats_db_name}.result_datasources rd, ${stats_db_name}.datasource d, ${stats_db_name}.datasource_organizations dor, ${stats_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;

89
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
View File

@ -1,38 +1,59 @@
------------------------------------------------------------------------------------------------------ ------------------------------------------------------
-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables ------------------------------------------------------
------------------------------------------------------------------------------------------------------ -- Additional relations
--
-- Sources related tables/views
------------------------------------------------------
------------------------------------------------------
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_sources as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.publication p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
DROP TABLE IF EXISTS ${stats_db_name}.datasource; CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_sources as
CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS SELECT * FROM ${stats_db_name}.datasource_tmp; SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.dataset p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
DROP TABLE IF EXISTS ${stats_db_name}.publication; CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_sources as
CREATE TABLE ${stats_db_name}.publication stored AS parquet AS SELECT * FROM ${stats_db_name}.publication_tmp; SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.software p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
DROP TABLE IF EXISTS ${stats_db_name}.dataset; CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_sources as
CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS SELECT * FROM ${stats_db_name}.dataset_tmp; SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.collectedfrom.key) c as datasource) p
LEFT OUTER JOIN
(
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
DROP TABLE IF EXISTS ${stats_db_name}.software; CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_sources AS
CREATE TABLE ${stats_db_name}.software stored AS parquet AS SELECT * FROM ${stats_db_name}.software_tmp; SELECT * FROM ${stats_db_name}.publication_sources
UNION ALL
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct; SELECT * FROM ${stats_db_name}.dataset_sources
CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS SELECT * FROM ${stats_db_name}.otherresearchproduct_tmp; UNION ALL
SELECT * FROM ${stats_db_name}.software_sources
DROP TABLE ${stats_db_name}.project_tmp; UNION ALL
DROP TABLE ${stats_db_name}.datasource_tmp; SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
DROP TABLE ${stats_db_name}.publication_tmp;
DROP TABLE ${stats_db_name}.dataset_tmp;
DROP TABLE ${stats_db_name}.software_tmp;
DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
----------------------------------------------
-- Re-creating views from final parquet tables
---------------------------------------------
-- Result
CREATE OR REPLACE VIEW ${stats_db_name}.result AS SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct;
-------------------------------------------------------------------------------
-- To see with Antonis if the following is needed and where it should be placed
-------------------------------------------------------------------------------
CREATE TABLE ${stats_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${stats_db_name}.result r, ${stats_db_name}.result_datasources rd, ${stats_db_name}.datasource d, ${stats_db_name}.datasource_organizations dor, ${stats_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;

96
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
View File

@ -1,47 +1,49 @@
COMPUTE STATS dataset; ------------------------------------------------------
COMPUTE STATS dataset_citations; ------------------------------------------------------
COMPUTE STATS dataset_classifications; -- Additional relations
COMPUTE STATS dataset_concepts; --
COMPUTE STATS dataset_datasources; -- Licences related tables/views
COMPUTE STATS dataset_languages; ------------------------------------------------------
COMPUTE STATS dataset_oids; ------------------------------------------------------
COMPUTE STATS dataset_pids; CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_licenses AS
COMPUTE STATS dataset_topics; SELECT substr(p.id, 4) as id, licenses.value as type
COMPUTE STATS datasource; from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.license) instances as licenses
COMPUTE STATS datasource_languages; where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
COMPUTE STATS datasource_oids;
COMPUTE STATS datasource_organizations; CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_licenses AS
COMPUTE STATS numbers_country; SELECT substr(p.id, 4) as id, licenses.value as type
COMPUTE STATS organization; from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.license) instances as licenses
COMPUTE STATS otherresearchproduct; where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
COMPUTE STATS otherresearchproduct_citations;
COMPUTE STATS otherresearchproduct_classifications; CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_licenses AS
COMPUTE STATS otherresearchproduct_concepts; SELECT substr(p.id, 4) as id, licenses.value as type
COMPUTE STATS otherresearchproduct_datasources; from ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.license) instances as licenses
COMPUTE STATS otherresearchproduct_languages; where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
COMPUTE STATS otherresearchproduct_oids;
COMPUTE STATS otherresearchproduct_pids; CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_licenses AS
COMPUTE STATS otherresearchproduct_topics; SELECT substr(p.id, 4) as id, licenses.value as type
COMPUTE STATS project; from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.license) instances as licenses
COMPUTE STATS project_oids; where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
COMPUTE STATS project_organizations;
COMPUTE STATS project_results; CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_licenses AS
COMPUTE STATS publication; SELECT * FROM ${stats_db_name}.publication_licenses
COMPUTE STATS publication_citations; UNION ALL
COMPUTE STATS publication_classifications; SELECT * FROM ${stats_db_name}.dataset_licenses
COMPUTE STATS publication_concepts; UNION ALL
COMPUTE STATS publication_datasources; SELECT * FROM ${stats_db_name}.software_licenses
COMPUTE STATS publication_languages; UNION ALL
COMPUTE STATS publication_oids; SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
COMPUTE STATS publication_pids;
COMPUTE STATS publication_topics; CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_pids AS
COMPUTE STATS result_organization; select substr(o.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid
COMPUTE STATS result_projects; from ${openaire_db_name}.organization o lateral view explode(o.pid) pids as ppid;
COMPUTE STATS software;
COMPUTE STATS software_citations; CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_sources as
COMPUTE STATS software_classifications; SELECT o.id, case when d.id is null then 'other' else o.datasource end as datasource
COMPUTE STATS software_concepts; FROM (
COMPUTE STATS software_datasources; SELECT substr(o.id, 4) as id, substr(instances.instance.key, 4) as datasource
COMPUTE STATS software_languages; from ${openaire_db_name}.organization o lateral view explode(o.collectedfrom) instances as instance) o
COMPUTE STATS software_oids; LEFT OUTER JOIN (
COMPUTE STATS software_pids; SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id;

35
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql Normal file
View File

@ -0,0 +1,35 @@
------------------------------------------------------
------------------------------------------------------
-- Additional relations
--
-- Refereed related tables/views
------------------------------------------------------
------------------------------------------------------
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_refereed as
select substr(r.id, 4) as id, inst.refereed.value as refereed
from ${openaire_db_name}.publication r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_refereed as
select substr(r.id, 4) as id, inst.refereed.value as refereed
from ${openaire_db_name}.dataset r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_refereed as
select substr(r.id, 4) as id, inst.refereed.value as refereed
from ${openaire_db_name}.software r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_refereed as
select substr(r.id, 4) as id, inst.refereed.value as refereed
from ${openaire_db_name}.otherresearchproduct r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false;
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_refereed as
select * from ${stats_db_name}.publication_refereed
union all
select * from ${stats_db_name}.dataset_refereed
union all
select * from ${stats_db_name}.software_refereed
union all
select * from ${stats_db_name}.otherresearchproduct_refereed;

160
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16.sql Normal file
View File

@ -0,0 +1,160 @@
------------------------------------------------------
------------------------------------------------------
-- Shadow schema table exchange
------------------------------------------------------
------------------------------------------------------
-- Dropping old views
DROP VIEW IF EXISTS ${stats_db_shadow_name}.country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.countrygdp;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.fundref;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.numbers_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.rndexpediture;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.roarmap;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_topics;
-- Creating new views
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.country AS SELECT * FROM ${stats_db_name}2.country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.countrygdp AS SELECT * FROM ${stats_db_name}2.countrygdp;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset AS SELECT * FROM ${stats_db_name}2.dataset;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_citations AS SELECT * FROM ${stats_db_name}2.dataset_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}2.dataset_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}2.dataset_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}2.dataset_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_languages AS SELECT * FROM ${stats_db_name}2.dataset_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}2.dataset_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_oids AS SELECT * FROM ${stats_db_name}2.dataset_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_pids AS SELECT * FROM ${stats_db_name}2.dataset_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_sources AS SELECT * FROM ${stats_db_name}2.dataset_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_topics AS SELECT * FROM ${stats_db_name}2.dataset_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource AS SELECT * FROM ${stats_db_name}2.datasource;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_languages AS SELECT * FROM ${stats_db_name}2.datasource_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_oids AS SELECT * FROM ${stats_db_name}2.datasource_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}2.datasource_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_results AS SELECT * FROM ${stats_db_name}2.datasource_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.fundref AS SELECT * FROM ${stats_db_name}2.fundref;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.numbers_country AS SELECT * FROM ${stats_db_name}2.numbers_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization AS SELECT * FROM ${stats_db_name}2.organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_datasources AS SELECT * FROM ${stats_db_name}2.organization_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_projects AS SELECT * FROM ${stats_db_name}2.organization_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}2.otherresearchproduct;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}2.otherresearchproduct_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project AS SELECT * FROM ${stats_db_name}2.project;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_oids AS SELECT * FROM ${stats_db_name}2.project_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_organizations AS SELECT * FROM ${stats_db_name}2.project_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results AS SELECT * FROM ${stats_db_name}2.project_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication AS SELECT * FROM ${stats_db_name}2.publication;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_citations AS SELECT * FROM ${stats_db_name}2.publication_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_classifications AS SELECT * FROM ${stats_db_name}2.publication_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_concepts AS SELECT * FROM ${stats_db_name}2.publication_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_datasources AS SELECT * FROM ${stats_db_name}2.publication_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_languages AS SELECT * FROM ${stats_db_name}2.publication_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_licenses AS SELECT * FROM ${stats_db_name}2.publication_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_oids AS SELECT * FROM ${stats_db_name}2.publication_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_pids AS SELECT * FROM ${stats_db_name}2.publication_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_sources AS SELECT * FROM ${stats_db_name}2.publication_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_topics AS SELECT * FROM ${stats_db_name}2.publication_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result AS SELECT * FROM ${stats_db_name}2.result;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_citations AS SELECT * FROM ${stats_db_name}2.result_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_classifications AS SELECT * FROM ${stats_db_name}2.result_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_concepts AS SELECT * FROM ${stats_db_name}2.result_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_datasources AS SELECT * FROM ${stats_db_name}2.result_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_languages AS SELECT * FROM ${stats_db_name}2.result_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_licenses AS SELECT * FROM ${stats_db_name}2.result_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_oids AS SELECT * FROM ${stats_db_name}2.result_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_organization AS SELECT * FROM ${stats_db_name}2.result_organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_pids AS SELECT * FROM ${stats_db_name}2.result_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projects AS SELECT * FROM ${stats_db_name}2.result_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_sources AS SELECT * FROM ${stats_db_name}2.result_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_topics AS SELECT * FROM ${stats_db_name}2.result_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.rndexpediture AS SELECT * FROM ${stats_db_name}2.rndexpediture;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.roarmap AS SELECT * FROM ${stats_db_name}2.roarmap;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software AS SELECT * FROM ${stats_db_name}2.software;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_citations AS SELECT * FROM ${stats_db_name}2.software_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_classifications AS SELECT * FROM ${stats_db_name}2.software_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_concepts AS SELECT * FROM ${stats_db_name}2.software_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_datasources AS SELECT * FROM ${stats_db_name}2.software_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_languages AS SELECT * FROM ${stats_db_name}2.software_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_licenses AS SELECT * FROM ${stats_db_name}2.software_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_oids AS SELECT * FROM ${stats_db_name}2.software_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_pids AS SELECT * FROM ${stats_db_name}2.software_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_sources AS SELECT * FROM ${stats_db_name}2.software_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_topics AS SELECT * FROM ${stats_db_name}2.software_topics;

54
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step17.sql Normal file
View File

@ -0,0 +1,54 @@
------------------------------------------------------
------------------------------------------------------
-- Impala table statistics - Needed to make the tables
-- visible for impala
------------------------------------------------------
------------------------------------------------------
COMPUTE STATS dataset;
COMPUTE STATS dataset_citations;
COMPUTE STATS dataset_classifications;
COMPUTE STATS dataset_concepts;
COMPUTE STATS dataset_datasources;
COMPUTE STATS dataset_languages;
COMPUTE STATS dataset_oids;
COMPUTE STATS dataset_pids;
COMPUTE STATS dataset_topics;
COMPUTE STATS datasource;
COMPUTE STATS datasource_languages;
COMPUTE STATS datasource_oids;
COMPUTE STATS datasource_organizations;
COMPUTE STATS numbers_country;
COMPUTE STATS organization;
COMPUTE STATS otherresearchproduct;
COMPUTE STATS otherresearchproduct_citations;
COMPUTE STATS otherresearchproduct_classifications;
COMPUTE STATS otherresearchproduct_concepts;
COMPUTE STATS otherresearchproduct_datasources;
COMPUTE STATS otherresearchproduct_languages;
COMPUTE STATS otherresearchproduct_oids;
COMPUTE STATS otherresearchproduct_pids;
COMPUTE STATS otherresearchproduct_topics;
COMPUTE STATS project;
COMPUTE STATS project_oids;
COMPUTE STATS project_organizations;
COMPUTE STATS project_results;
COMPUTE STATS publication;
COMPUTE STATS publication_citations;
COMPUTE STATS publication_classifications;
COMPUTE STATS publication_concepts;
COMPUTE STATS publication_datasources;
COMPUTE STATS publication_languages;
COMPUTE STATS publication_oids;
COMPUTE STATS publication_pids;
COMPUTE STATS publication_topics;
COMPUTE STATS result_organization;
COMPUTE STATS result_projects;
COMPUTE STATS software;
COMPUTE STATS software_citations;
COMPUTE STATS software_classifications;
COMPUTE STATS software_concepts;
COMPUTE STATS software_datasources;
COMPUTE STATS software_languages;
COMPUTE STATS software_oids;
COMPUTE STATS software_pids;

5
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql
View File

@ -1,6 +1,6 @@
-------------------------------------------------------------- --------------------------------------------------------------
-------------------------------------------------------------- --------------------------------------------------------------
-- 2. Publication table/view and Publication related tables/views -- Publication table/view and Publication related tables/views
-------------------------------------------------------------- --------------------------------------------------------------
-------------------------------------------------------------- --------------------------------------------------------------
@ -30,3 +30,6 @@ CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) AS id,
CREATE TABLE ${stats_db_name}.publication_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.pid) pids AS ppid; CREATE TABLE ${stats_db_name}.publication_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.pid) pids AS ppid;
CREATE TABLE ${stats_db_name}.publication_topics as select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.subject) subjects AS subject; CREATE TABLE ${stats_db_name}.publication_topics as select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.subject) subjects AS subject;
-- Publication_citations
CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";

38
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql
View File

@ -1,2 +1,36 @@
-- 3. Publication_citations ------------------------------------------------------
CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; ------------------------------------------------------
-- Dataset table/view and Dataset related tables/views
------------------------------------------------------
------------------------------------------------------
-- Dataset temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.dataset_tmp SELECT substr(d.id, 4) AS id, d.title[0].value AS title, d.publisher.value AS publisher, cast(null AS string) AS journal,
d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') AS year, d.bestaccessright.classname AS bestlicence,
d.embargoenddate.value AS embargo_end_date, false AS delayed, size(d.author) AS authors , concat_ws('\u003B',d.source.value) AS source,
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
'dataset' AS type
FROM ${openaire_db_name}.dataset d
WHERE d.datainfo.deletedbyinference=FALSE;
-- Dataset_citations
CREATE TABLE ${stats_db_name}.dataset_citations AS SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.dataset d LATERAL VIEW explode(d.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype;
CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context;
CREATE TABLE ${stats_db_name}.dataset_datasources AS SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance) instances AS instance) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.dataset_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.dataset p;
CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids AS ids;
CREATE TABLE ${stats_db_name}.dataset_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.pid) pids AS ppid;
CREATE TABLE ${stats_db_name}.dataset_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.subject) subjects AS subject;

50
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql
View File

@ -1,36 +1,36 @@
------------------------------------------------------ --------------------------------------------------------
------------------------------------------------------ --------------------------------------------------------
-- 4. Dataset table/view and Dataset related tables/views -- Software table/view and Software related tables/views
------------------------------------------------------ --------------------------------------------------------
------------------------------------------------------ --------------------------------------------------------
-- Dataset temporary table supporting updates -- Software temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp; DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored AS orc tblproperties('transactional'='true'); CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.dataset_tmp SELECT substr(d.id, 4) AS id, d.title[0].value AS title, d.publisher.value AS publisher, cast(null AS string) AS journal, INSERT INTO ${stats_db_name}.software_tmp SELECT substr(s.id, 4) as id, s.title[0].value AS title, s.publisher.value AS publisher, CAST(NULL AS string) AS journal,
d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') AS year, d.bestaccessright.classname AS bestlicence, s.dateofacceptance.value AS DATE, date_format(s.dateofacceptance.value,'yyyy') AS YEAR, s.bestaccessright.classname AS bestlicence,
d.embargoenddate.value AS embargo_end_date, false AS delayed, size(d.author) AS authors , concat_ws('\u003B',d.source.value) AS source, s.embargoenddate.value AS embargo_end_date, FALSE AS delayed, SIZE(s.author) AS authors , concat_ws('\u003B',s.source.value) AS source,
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract, CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'dataset' AS type 'software' as type
FROM ${openaire_db_name}.dataset d from ${openaire_db_name}.software s
WHERE d.datainfo.deletedbyinference=FALSE; where s.datainfo.deletedbyinference=false;
-- Dataset_citations -- Software_citations
CREATE TABLE ${stats_db_name}.dataset_citations AS SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.dataset d LATERAL VIEW explode(d.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; CREATE TABLE ${stats_db_name}.software_citations AS SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.software s LATERAL VIEW explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype; CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype;
CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context; CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts AS context;
CREATE TABLE ${stats_db_name}.dataset_datasources AS SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource CREATE TABLE ${stats_db_name}.software_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance) instances AS instance) p LEFT OUTER JOIN FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance) instances AS instance) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id; (SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.dataset_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.dataset p; CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.software p;
CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids AS ids; CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids AS ids;
CREATE TABLE ${stats_db_name}.dataset_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.pid) pids AS ppid; CREATE TABLE ${stats_db_name}.software_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.pid) pids AS ppid;
CREATE TABLE ${stats_db_name}.dataset_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.subject) subjects AS subject; CREATE TABLE ${stats_db_name}.software_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.subject) subjects AS subject;

53
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql
View File

@ -1,36 +1,37 @@
-------------------------------------------------------- --------------------------------------------------------------------------------
-------------------------------------------------------- --------------------------------------------------------------------------------
-- 5. Software table/view and Software related tables/views -- Otherresearchproduct table/view and Otherresearchproduct related tables/views
-------------------------------------------------------- --------------------------------------------------------------------------------
-------------------------------------------------------- --------------------------------------------------------------------------------
-- Software temporary table supporting updates -- Otherresearchproduct temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp; DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true'); CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.software_tmp SELECT substr(s.id, 4) as id, s.title[0].value AS title, s.publisher.value AS publisher, CAST(NULL AS string) AS journal, INSERT INTO ${stats_db_name}.otherresearchproduct_tmp SELECT substr(o.id, 4) AS id, o.title[0].value AS title, o.publisher.value AS publisher, CAST(NULL AS string) AS journal,
s.dateofacceptance.value AS DATE, date_format(s.dateofacceptance.value,'yyyy') AS YEAR, s.bestaccessright.classname AS bestlicence, o.dateofacceptance.value AS DATE, date_format(o.dateofacceptance.value,'yyyy') AS year, o.bestaccessright.classname AS bestlicence,
s.embargoenddate.value AS embargo_end_date, FALSE AS delayed, SIZE(s.author) AS authors , concat_ws('\u003B',s.source.value) AS source, o.embargoenddate.value as embargo_end_date, FALSE AS delayed, SIZE(o.author) AS authors , concat_ws('\u003B',o.source.value) AS source,
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract, CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'software' as type 'other' AS type
from ${openaire_db_name}.software s FROM ${openaire_db_name}.otherresearchproduct o
where s.datainfo.deletedbyinference=false; WHERE o.datainfo.deletedbyinference=FALSE;
-- Software_citations -- Otherresearchproduct_citations
CREATE TABLE ${stats_db_name}.software_citations AS SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.software s LATERAL VIEW explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype; CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype;
CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts AS context; CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context;
CREATE TABLE ${stats_db_name}.software_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance) instances AS instance) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.software p; CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids AS ids; CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.otherresearchproduct p;
CREATE TABLE ${stats_db_name}.software_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.pid) pids AS ppid; CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids;
CREATE TABLE ${stats_db_name}.software_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.subject) subjects AS subject; CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid;
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject;

53
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql
View File

@ -1,37 +1,24 @@
-------------------------------------------------------------------------------- ------------------------------------------------------
-------------------------------------------------------------------------------- ------------------------------------------------------
-- 6. Otherresearchproduct table/view and Otherresearchproduct related tables/views -- Project table/view and Project related tables/views
-------------------------------------------------------------------------------- ------------------------------------------------------
-------------------------------------------------------------------------------- ------------------------------------------------------
-- Project_oids Table
DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
-- Otherresearchproduct temporary table supporting updates -- Project_organizations Table
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp; DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true'); CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization';
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp SELECT substr(o.id, 4) AS id, o.title[0].value AS title, o.publisher.value AS publisher, CAST(NULL AS string) AS journal, -- Project_results Table
o.dateofacceptance.value AS DATE, date_format(o.dateofacceptance.value,'yyyy') AS year, o.bestaccessright.classname AS bestlicence, DROP TABLE IF EXISTS ${stats_db_name}.project_results;
o.embargoenddate.value as embargo_end_date, FALSE AS delayed, SIZE(o.author) AS authors , concat_ws('\u003B',o.source.value) AS source, CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result FROM ${openaire_db_name}.relation r WHERE r.reltype='resultProject';
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'other' AS type
FROM ${openaire_db_name}.otherresearchproduct o
WHERE o.datainfo.deletedbyinference=FALSE;
-- Otherresearchproduct_citations -- Project table
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; ----------------
-- Creating and populating temporary Project table
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year STRING, end_year STRING, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype; INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) AS id, p.acronym.value AS acronym, p.title.value AS title, xpath_string(p.fundingtree[0].value, '//funder/name') AS funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2, p.ecsc39.value AS ec39, p.contracttype.classname AS type, p.startdate.value AS startdate, p.enddate.value AS enddate, date_format(p.startdate.value, 'yyyy') AS start_year, date_format(p.enddate.value, 'yyyy') AS end_year, 0 AS duration, 'no' AS haspubs, 0 AS numpubs, 0 AS daysforlastpub, 0 AS delayedpubs, p.callidentifier.value AS callidentifier, p.code.value AS code FROM ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context;
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.otherresearchproduct p;
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids;
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid;
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject;

47
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
View File

@ -1,24 +1,31 @@
------------------------------------------------------ ----------------------------------------------------
------------------------------------------------------ ----------------------------------------------------
-- 7. Project table/view and Project related tables/views -- Result table/view and Result related tables/views
------------------------------------------------------ ----------------------------------------------------
------------------------------------------------------ ----------------------------------------------------
-- Project_oids Table
DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
-- Project_organizations Table -- Views on temporary tables that should be re-created in the end
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations; CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;
CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization';
-- Project_results Table -- Views on final tables
DROP TABLE IF EXISTS ${stats_db_name}.project_results; CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result FROM ${openaire_db_name}.relation r WHERE r.reltype='resultProject';
-- Project table CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
----------------
-- Creating and populating temporary Project table
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year STRING, end_year STRING, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) AS id, p.acronym.value AS acronym, p.title.value AS title, xpath_string(p.fundingtree[0].value, '//funder/name') AS funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2, p.ecsc39.value AS ec39, p.contracttype.classname AS type, p.startdate.value AS startdate, p.enddate.value AS enddate, date_format(p.startdate.value, 'yyyy') AS start_year, date_format(p.enddate.value, 'yyyy') AS end_year, 0 AS duration, 'no' AS haspubs, 0 AS numpubs, 0 AS daysforlastpub, 0 AS delayedpubs, p.callidentifier.value AS callidentifier, p.code.value AS code FROM ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false; CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='resultOrganization';
DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
CREATE TABLE ${stats_db_name}.result_projects AS select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend FROM ${stats_db_name}.result r JOIN ${stats_db_name}.project_results pr ON r.id=pr.result JOIN ${stats_db_name}.project_tmp p ON p.id=pr.id;

52
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8.sql
View File

@ -1,31 +1,37 @@
---------------------------------------------------- ------------------------------------------------------------
---------------------------------------------------- ------------------------------------------------------------
-- 8. Result table/view and Result related tables/views -- Datasource table/view and Datasource related tables/views
---------------------------------------------------- ------------------------------------------------------------
---------------------------------------------------- ------------------------------------------------------------
-- Views on temporary tables that should be re-created in the end -- Datasource table creation & update
CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct_tmp; -------------------------------------
-- Creating and populating temporary datasource table
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
CREATE TABLE ${stats_db_name}.datasource_tmp(`id` string, `name` STRING, `type` STRING, `dateofvalidation` STRING, `yearofvalidation` string, `harvested` BOOLEAN, `piwik_id` INT, `latitude` STRING, `longitude`STRING, `websiteurl` STRING, `compatibility` STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
-- Views on final tables INSERT INTO ${stats_db_name}.datasource_tmp SELECT substr(d.id, 4) AS id, officialname.value AS name, datasourcetype.classname AS type, dateofvalidation.value AS dateofvalidation, date_format(d.dateofvalidation.value,'yyyy') AS yearofvalidation, FALSE AS harvested, 0 AS piwik_id, d.latitude.value AS latitude, d.longitude.value AS longitude, d.websiteurl.value AS websiteurl, d.openairecompatibility.classid AS compatibility
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources; FROM ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=FALSE;
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations; -- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
-- Creating a temporary dual table that will be removed after the following insert
CREATE TABLE ${stats_db_name}.dual(dummy CHAR(1));
INSERT INTO ${stats_db_name}.dual VALUES('X');
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
DROP TABLE ${stats_db_name}.dual;
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications; UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name='Unknown Repository';
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts; DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) AS id, langs.languages AS language FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages; DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids; DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
CREATE TABLE ${stats_db_name}.datasource_organizations AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='datasourceOrganization';
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids; CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='resultOrganization';
DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
CREATE TABLE ${stats_db_name}.result_projects AS select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend FROM ${stats_db_name}.result r JOIN ${stats_db_name}.project_results pr ON r.id=pr.result JOIN ${stats_db_name}.project_tmp p ON p.id=pr.id;

44
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9.sql
View File

@ -1,36 +1,12 @@
------------------------------------------------------------ ----------------------------------------------------------------
------------------------------------------------------------ ----------------------------------------------------------------
-- 9. Datasource table/view and Datasource related tables/views -- Organization table/view and Organization related tables/views
------------------------------------------------------------ ----------------------------------------------------------------
------------------------------------------------------------ ----------------------------------------------------------------
-- Datasource table creation & update DROP TABLE IF EXISTS ${stats_db_name}.organization;
------------------------------------- CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname as legalshortname, o.country.classid as country
-- Creating and populating temporary datasource table FROM openaire.organization o WHERE o.datainfo.deletedbyinference=FALSE;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
CREATE TABLE ${stats_db_name}.datasource_tmp(`id` string, `name` STRING, `type` STRING, `dateofvalidation` STRING, `yearofvalidation` string, `harvested` BOOLEAN, `piwik_id` INT, `latitude` STRING, `longitude`STRING, `websiteurl` STRING, `compatibility` STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.datasource_tmp SELECT substr(d.id, 4) AS id, officialname.value AS name, datasourcetype.classname AS type, dateofvalidation.value AS dateofvalidation, date_format(d.dateofvalidation.value,'yyyy') AS yearofvalidation, FALSE AS harvested, 0 AS piwik_id, d.latitude.value AS latitude, d.longitude.value AS longitude, d.websiteurl.value AS websiteurl, d.openairecompatibility.classid AS compatibility CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
FROM ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=FALSE;
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table. CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;
-- Creating a temporary dual table that will be removed after the following insert
CREATE TABLE ${stats_db_name}.dual(dummy CHAR(1));
INSERT INTO ${stats_db_name}.dual VALUES('X');
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
DROP TABLE ${stats_db_name}.dual;
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name='Unknown Repository';
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) AS id, langs.languages AS language FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
CREATE TABLE ${stats_db_name}.datasource_organizations AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='datasourceOrganization';
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;

39
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
View File

@ -13,6 +13,10 @@
<value>stats_ext</value> <value>stats_ext</value>
<description>the external stats that should be added since they are not included in the graph database</description> <description>the external stats that should be added since they are not included in the graph database</description>
</property> </property>
<property>
<name>stats_db_shadow_name</name>
<description>the name of the shadow schema</description>
</property>
<property> <property>
<name>hive_metastore_uris</name> <name>hive_metastore_uris</name>
<description>hive server metastore URIs</description> <description>hive server metastore URIs</description>
@ -153,6 +157,7 @@
<script>scripts/step10.sql</script> <script>scripts/step10.sql</script>
<param>stats_db_name=${stats_db_name}</param> <param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param> <param>openaire_db_name=${openaire_db_name}</param>
<param>external_stats_db_name=${external_stats_db_name}</param>
</hive2> </hive2>
<ok to="Step11"/> <ok to="Step11"/>
<error to="Kill"/> <error to="Kill"/>
@ -176,7 +181,6 @@
<script>scripts/step12.sql</script> <script>scripts/step12.sql</script>
<param>stats_db_name=${stats_db_name}</param> <param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param> <param>openaire_db_name=${openaire_db_name}</param>
<param>external_stats_db_name=${external_stats_db_name}</param>
</hive2> </hive2>
<ok to="Step13"/> <ok to="Step13"/>
<error to="Kill"/> <error to="Kill"/>
@ -194,6 +198,39 @@
</action> </action>
<action name="Step14"> <action name="Step14">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step14.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step15"/>
<error to="Kill"/>
</action>
<action name="Step15">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step15.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step16"/>
<error to="Kill"/>
</action>
<action name="Step16">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step16.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>stats_db_shadow_name=${stats_db_shadow_name}</param>
</hive2>
<ok to="Step17"/>
<error to="Kill"/>
</action>
<action name="Step17">
<shell xmlns="uri:oozie:shell-action:0.1"> <shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker> <job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node> <name-node>${nameNode}</name-node>