Code formatted

dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/crossref/CrossrefMappingTest.scala

@@ -31,13 +31,13 @@ class CrossrefMappingTest {
       .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/doiboost/crossref/funder_doi"))
       .mkString
 
-    for (line <- funder_doi.linesWithSeparators.map(l =>l.stripLineEnd)) {
+    for (line <- funder_doi.linesWithSeparators.map(l => l.stripLineEnd)) {
       val json = template.replace("%s", line)
       val resultList: List[Oaf] = Crossref2Oaf.convert(json)
       assertTrue(resultList.nonEmpty)
       checkRelation(resultList)
     }
-    for (line <- funder_name.linesWithSeparators.map(l =>l.stripLineEnd)) {
+    for (line <- funder_name.linesWithSeparators.map(l => l.stripLineEnd)) {
       val json = template.replace("%s", line)
       val resultList: List[Oaf] = Crossref2Oaf.convert(json)
       assertTrue(resultList.nonEmpty)

dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/orcid/MappingORCIDToOAFTest.scala

@@ -25,9 +25,11 @@ class MappingORCIDToOAFTest {
       .mkString
     assertNotNull(json)
     assertFalse(json.isEmpty)
-    json.linesWithSeparators.map(l =>l.stripLineEnd).foreach(s => {
-      assertNotNull(ORCIDToOAF.extractValueFromInputString(s))
-    })
+    json.linesWithSeparators
+      .map(l => l.stripLineEnd)
+      .foreach(s => {
+        assertNotNull(ORCIDToOAF.extractValueFromInputString(s))
+      })
   }
 
   @Test

dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/uw/UnpayWallMappingTest.scala

@@ -22,7 +22,7 @@ class UnpayWallMappingTest {
       .mkString
 
     var i: Int = 0
-    for (line <- Ilist.linesWithSeparators.map(l =>l.stripLineEnd)) {
+    for (line <- Ilist.linesWithSeparators.map(l => l.stripLineEnd)) {
       val p = UnpayWallToOAF.convertToOAF(line)
 
       if (p != null) {
@@ -43,7 +43,7 @@ class UnpayWallMappingTest {
       i = i + 1
     }
 
-    val l = Ilist.linesWithSeparators.map(l =>l.stripLineEnd).next()
+    val l = Ilist.linesWithSeparators.map(l => l.stripLineEnd).next()
 
     val item = UnpayWallToOAF.convertToOAF(l)
 

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateMongoMdstoresApplication.java

@@ -114,7 +114,7 @@ public class MigrateMongoMdstoresApplication extends AbstractMigrationApplicatio
 	}
 
 	/**
-	 * This method is responsible to synch only the mongoMDStore that changed since last time
+	 * This method is responsible to sync only the stores that have been changed since last time
 	 * @param mdFormat the MDStore's format
 	 * @param mdLayout the MDStore'slayout
 	 * @param mdInterpretation the MDStore's interpretation
@@ -164,7 +164,7 @@ public class MigrateMongoMdstoresApplication extends AbstractMigrationApplicatio
 	}
 
 	/**
-	 *This methos store into hdfs all the mongo record of a single mdstore
+	 *This method store into hdfs all the MONGO record of a single mdstore into the HDFS File
 	 *
 	 * @param mdFormat the MDStore's format
 	 * @param mdLayout the MDStore'slayout

dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/clean/CleanCountryTest.java

@@ -5,7 +5,6 @@ import java.io.IOException;
 import java.nio.file.Files;
 import java.nio.file.Path;
 
-import eu.dnetlib.dhp.schema.oaf.Dataset;
 import org.apache.commons.io.FileUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
@@ -27,6 +26,7 @@ import org.slf4j.LoggerFactory;
 import com.fasterxml.jackson.databind.ObjectMapper;
 
 import eu.dnetlib.dhp.oa.graph.clean.country.CleanCountrySparkJob;
+import eu.dnetlib.dhp.schema.oaf.Dataset;
 import eu.dnetlib.dhp.schema.oaf.Publication;
 
 public class CleanCountryTest {
@@ -151,41 +151,40 @@ public class CleanCountryTest {
 	@Test
 	public void testDatasetClean() throws Exception {
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/clean/dataset_clean_country.json")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/clean/dataset_clean_country.json")
+			.getPath();
 
 		spark
-				.read()
-				.textFile(sourcePath)
-				.map(
-						(MapFunction<String, Dataset>) r -> OBJECT_MAPPER.readValue(r, Dataset.class),
-						Encoders.bean(Dataset.class))
-				.write()
-				.json(workingDir.toString() + "/dataset");
+			.read()
+			.textFile(sourcePath)
+			.map(
+				(MapFunction<String, Dataset>) r -> OBJECT_MAPPER.readValue(r, Dataset.class),
+				Encoders.bean(Dataset.class))
+			.write()
+			.json(workingDir.toString() + "/dataset");
 
 		CleanCountrySparkJob.main(new String[] {
-				"--isSparkSessionManaged", Boolean.FALSE.toString(),
-				"--inputPath", workingDir.toString() + "/dataset",
-				"-graphTableClassName", Dataset.class.getCanonicalName(),
-				"-workingDir", workingDir.toString() + "/working",
-				"-country", "NL",
-				"-verifyParam", "10.17632",
-				"-collectedfrom", "NARCIS",
-				"-hostedBy", getClass()
+			"--isSparkSessionManaged", Boolean.FALSE.toString(),
+			"--inputPath", workingDir.toString() + "/dataset",
+			"-graphTableClassName", Dataset.class.getCanonicalName(),
+			"-workingDir", workingDir.toString() + "/working",
+			"-country", "NL",
+			"-verifyParam", "10.17632",
+			"-collectedfrom", "NARCIS",
+			"-hostedBy", getClass()
 				.getResource("/eu/dnetlib/dhp/oa/graph/clean/hostedBy")
 				.getPath()
 		});
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 		JavaRDD<Dataset> tmp = sc
-				.textFile(workingDir.toString() + "/dataset")
-				.map(item -> OBJECT_MAPPER.readValue(item, Dataset.class));
+			.textFile(workingDir.toString() + "/dataset")
+			.map(item -> OBJECT_MAPPER.readValue(item, Dataset.class));
 
 		Assertions.assertEquals(1, tmp.count());
 
 		Assertions.assertEquals(0, tmp.first().getCountry().size());
 
-
 	}
 
 }

dhp-workflows/dhp-graph-mapper/src/test/scala/eu/dnetlib/dhp/oa/graph/resolution/ResolveEntitiesTest.scala

@@ -53,7 +53,8 @@ class ResolveEntitiesTest extends Serializable {
   def generateUpdates(spark: SparkSession): Unit = {
     val template = Source.fromInputStream(this.getClass.getResourceAsStream("updates")).mkString
 
-    val pids: List[String] = template.linesWithSeparators.map(l =>l.stripLineEnd)
+    val pids: List[String] = template.linesWithSeparators
+      .map(l => l.stripLineEnd)
       .map { id =>
         val r = new Result
         r.setId(id.toLowerCase.trim)
@@ -127,7 +128,7 @@ class ResolveEntitiesTest extends Serializable {
     entities.foreach { e =>
       val template = Source.fromInputStream(this.getClass.getResourceAsStream(s"$e")).mkString
       spark
-        .createDataset(spark.sparkContext.parallelize(template.linesWithSeparators.map(l =>l.stripLineEnd).toList))
+        .createDataset(spark.sparkContext.parallelize(template.linesWithSeparators.map(l => l.stripLineEnd).toList))
         .as[String]
         .write
         .option("compression", "gzip")
@@ -264,7 +265,8 @@ class ResolveEntitiesTest extends Serializable {
       Source
         .fromInputStream(this.getClass.getResourceAsStream(s"publication"))
         .mkString
-        .linesWithSeparators.map(l =>l.stripLineEnd)
+        .linesWithSeparators
+        .map(l => l.stripLineEnd)
         .next(),
       classOf[Publication]
     )

dhp-workflows/dhp-graph-mapper/src/test/scala/eu/dnetlib/dhp/sx/graph/scholix/ScholixGraphTest.scala

@@ -47,7 +47,7 @@ class ScholixGraphTest extends AbstractVocabularyTest {
     val inputRelations = Source
       .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/oaf_to_summary"))
       .mkString
-    val items = inputRelations.linesWithSeparators.map(l =>l.stripLineEnd).toList
+    val items = inputRelations.linesWithSeparators.map(l => l.stripLineEnd).toList
     assertNotNull(items)
     items.foreach(i => assertTrue(i.nonEmpty))
     val result =
@@ -69,7 +69,8 @@ class ScholixGraphTest extends AbstractVocabularyTest {
         getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/merge_result_scholix")
       )
       .mkString
-    val result: List[(Relation, ScholixSummary)] = inputRelations.linesWithSeparators.map(l =>l.stripLineEnd)
+    val result: List[(Relation, ScholixSummary)] = inputRelations.linesWithSeparators
+      .map(l => l.stripLineEnd)
       .sliding(2)
       .map(s => (s.head, s(1)))
       .map(p => (mapper.readValue(p._1, classOf[Relation]), mapper.readValue(p._2, classOf[ScholixSummary])))