From 83c262a483a4ecc4d7a12d6ddab2086c2f447387 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Fri, 15 May 2020 18:18:31 +0200
Subject: [PATCH] workflow to download the files

---
 .../h2020programme/oozie_app/workflow.xml     | 145 +++++++-----------
 1 file changed, 57 insertions(+), 88 deletions(-)

diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionset/h2020programme/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionset/h2020programme/oozie_app/workflow.xml
index 3e7f68401..9b200c2a9 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionset/h2020programme/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionset/h2020programme/oozie_app/workflow.xml
@@ -1,112 +1,81 @@
-<workflow-app name="CollectionWorkflow" xmlns="uri:oozie:workflow:0.5">
+<workflow-app name="H2020Programme" xmlns="uri:oozie:workflow:0.5">
     <parameters>
         <property>
-            <name>sequenceFilePath</name>
-            <description>the path to store the sequence file of the native metadata collected</description>
+            <name>projectFileURL</name>
+            <description>the url where to get the projects file</description>
         </property>
 
         <property>
-            <name>mdStorePath</name>
-            <description>the path of the native mdstore</description>
+            <name>programmeFileURL</name>
+            <description>the url where to get the programme file</description>
         </property>
 
         <property>
-            <name>apiDescription</name>
-            <description>A json encoding of the API Description class</description>
-        </property>
-
-        <property>
-            <name>dataSourceInfo</name>
-            <description>A json encoding of the Datasource Info</description>
-        </property>
-        <property>
-            <name>identifierPath</name>
-            <description>An xpath to retrieve the metadata idnentifier for the generation of DNet Identifier </description>
-        </property>
-
-        <property>
-            <name>metadataEncoding</name>
-            <description> The type of the metadata XML/JSON</description>
-        </property>
-
-        <property>
-            <name>timestamp</name>
-            <description>The timestamp of the collection date</description>
-        </property>
-
-        <property>
-            <name>workflowId</name>
-            <description>The identifier of the workflow</description>
+            <name>outputPath</name>
+            <description>path where to store the action set</description>
         </property>
     </parameters>
 
-    <start to="DeleteMDStoresNative"/>
+    <start to="deleteoutputpath"/>
     <kill name="Kill">
         <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
     </kill>
-    <action name="DeleteMDStoresNative">
+    <action name="deleteoutputpath">
         <fs>
-            <mkdir path='${sequenceFilePath}'/>
-            <mkdir path='${mdStorePath}'/>
-            <delete path='${sequenceFilePath}'/>
-            <delete path='${mdStorePath}'/>
+            <delete path='${outputPath}'/>
+            <mkdir path='${outputPath}'/>
         </fs>
-        <ok to="CollectionWorker"/>
+        <ok to="get_project_file"/>
         <error to="Kill"/>
     </action>
-    <action name="CollectionWorker">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.dhp.collection.worker.DnetCollectorWorker</main-class>
-            <java-opts>-p</java-opts><java-opts>${sequenceFilePath}</java-opts>
-            <java-opts>-a</java-opts><java-opts>${apiDescription}</java-opts>
-            <java-opts>-n</java-opts><java-opts>${nameNode}</java-opts>
-            <java-opts>-rh</java-opts><java-opts>${rmq_host}</java-opts>
-            <java-opts>-ru</java-opts><java-opts>${rmq_user}</java-opts>
-            <java-opts>-rp</java-opts><java-opts>${rmq_pwd}</java-opts>
-            <java-opts>-rr</java-opts><java-opts>${rmq_report}</java-opts>
-            <java-opts>-ro</java-opts><java-opts>${rmq_ongoing}</java-opts>
-            <java-opts>-u</java-opts><java-opts>sandro.labruzzo</java-opts>
-            <java-opts>-w</java-opts><java-opts>${workflowId}</java-opts>
-        </java>
-        <ok to="GenerateNativeStoreSparkJob"/>
-        <error to="Kill"/>
-    </action>
-    <action name="GenerateNativeStoreSparkJob">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>GenerateNativeStoreSparkJob</name>
-            <class>eu.dnetlib.dhp.collection.GenerateNativeStoreSparkJob</class>
-            <jar>dhp-aggregations-1.0.0-SNAPSHOT.jar</jar>
-            <spark-opts>--num-executors 50 --conf spark.yarn.jars=&quot;hdfs://hadoop-rm1.garr-pa1.d4science.org:8020/user/oozie/share/lib/lib_20180405103059/spark2&quot;</spark-opts>
-            <arg>--encoding</arg> <arg>${metadataEncoding}</arg>
-            <arg>--dateOfCollection</arg> <arg>${timestamp}</arg>
-            <arg>--provenance</arg> <arg> ${dataSourceInfo}</arg>
-            <arg>--xpath</arg><arg>${identifierPath}</arg>
-            <arg>--input</arg><arg>${sequenceFilePath}</arg>
-            <arg>--output</arg><arg>${mdStorePath}</arg>
-            <arg>-rh</arg><arg>${rmq_host}</arg>
-            <arg>-ru</arg><arg>${rmq_user}</arg>
-            <arg>-rp</arg><arg>${rmq_pwd}</arg>
-            <arg>-rr</arg><arg>${rmq_report}</arg>
-            <arg>-ro</arg><arg>${rmq_ongoing}</arg>
-            <arg>-w</arg><arg>${workflowId}</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="DropInvalidStore"/>
-    </action>
 
-    <action name="DropInvalidStore">
-        <fs>
-            <delete path='${mdStorePath}/../'/>
-        </fs>
-        <ok to="Kill"/>
+    <action name="get_project_file">
+        <java>
+            <main-class>eu.dnetlib.dhp.actionset.h2020programme.GetFile</main-class>
+            <arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
+            <arg>--fileUrl</arg><arg>${projectFileURL}</arg>
+            <arg>--hdfsPath</arg><arg>${workingDir}/projects.csv</arg>
+        </java>
+        <ok to="shell_get_programme_file"/>
         <error to="Kill"/>
     </action>
 
+    <action name="shell_get_programme_file">
+        <java>
+            <main-class>eu.dnetlib.dhp.actionset.h2020programme.GetFile</main-class>
+            <arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
+            <arg>--fileUrl</arg><arg>${programmeFileURL}</arg>
+            <arg>--hdfsPath</arg><arg>${workingDir}/programme.csv</arg>
+        </java>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+<!--    <action name="create_actionset">-->
+<!--        <spark xmlns="uri:oozie:spark-action:0.2">-->
+<!--            <master>yarn</master>-->
+<!--            <mode>cluster</mode>-->
+<!--            <name>ProjectProgrammeAS</name>-->
+<!--            <class>eu.dnetlib.dhp.actionset.h2020programme</class>-->
+<!--            <jar>dhp-aggregation-${projectVersion}.jar</jar>-->
+<!--            <spark-opts>-->
+<!--                &#45;&#45;executor-cores=${sparkExecutorCores}-->
+<!--                &#45;&#45;executor-memory=${sparkExecutorMemory}-->
+<!--                &#45;&#45;driver-memory=${sparkDriverMemory}-->
+<!--                &#45;&#45;conf spark.extraListeners=${spark2ExtraListeners}-->
+<!--                &#45;&#45;conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}-->
+<!--                &#45;&#45;conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}-->
+<!--                &#45;&#45;conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}-->
+<!--                &#45;&#45;conf spark.sql.shuffle.partitions=3840-->
+<!--            </spark-opts>-->
+<!--            <arg>&#45;&#45;sourcePath</arg><arg>${sourcePath}/relation</arg>-->
+<!--            <arg>&#45;&#45;outputPath</arg><arg>${outputPath}/relation</arg>-->
+<!--            <arg>&#45;&#45;hdfsPath</arg><arg>${workingDir}/blacklist</arg>-->
+<!--            <arg>&#45;&#45;mergesPath</arg><arg>${workingDir}/mergesRelation</arg>-->
+<!--        </spark>-->
+<!--        <ok to="End"/>-->
+<!--        <error to="Kill"/>-->
+<!--    </action>-->
+
     <end name="End"/>
 </workflow-app>
\ No newline at end of file