forked from D-Net/dnet-hadoop
assigning correctly hive contexts to concepts
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c5fbad8093
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@ -9,8 +9,8 @@ echo "Downloading context data"
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curl ${CONTEXT_API}/contexts?all=true -H "accept: application/json" | /usr/local/sbin/jq -r '.[] | "\(.id),\(.label)"' > contexts.csv
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curl ${CONTEXT_API}/contexts?all=true -H "accept: application/json" | /usr/local/sbin/jq -r '.[] | "\(.id),\(.label)"' > contexts.csv
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cat contexts.csv | cut -d , -f1 | xargs -I {} curl ${CONTEXT_API}/context/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split(":")[0]),\(.id),\(.label)"' > categories.csv
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cat contexts.csv | cut -d , -f1 | xargs -I {} curl ${CONTEXT_API}/context/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split(":")[0]),\(.id),\(.label)"' > categories.csv
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cat categories.csv | cut -d , -f2 | sed 's/:/%3A/g'| xargs -I {} curl ${CONTEXT_API}/context/category/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split("::")[0])::\(.id|split("::")[1]),\(.id),\(.label)"' > concepts.csv
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cat categories.csv | cut -d , -f2 | sed 's/:/%3A/g'| xargs -I {} curl ${CONTEXT_API}/context/category/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split("::")[0])::\(.id|split("::")[1]),\(.id),\(.label)"' > concepts.csv
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cat contexts.csv | cut -f1 -d, | sed 's/\(.*\)/\1,\1::other,other/' >> categories.csv
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cat contexts.csv | sed 's/^\(.*\),\(.*\)/\1,\1::other,\2/' >> categories.csv
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cat categories.csv | cut -d, -f2 | sed 's/\(.*\)/\1,\1::other,other/' >> concepts.csv
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cat categories.csv | grep -v ::other | sed 's/^.*,\(.*\),\(.*\)/\1,\1::other,\2/' >> concepts.csv
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echo "uploading context data to hdfs"
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echo "uploading context data to hdfs"
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hdfs dfs -mkdir ${TMP}
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hdfs dfs -mkdir ${TMP}
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@ -29,5 +29,8 @@ impala-shell -c "load data inpath '${TMP}/concepts.csv' into table ${TARGET_DB}.
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echo "Cleaning up"
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echo "Cleaning up"
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hdfs dfs -rm -f -r -skipTrash ${TMP}
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hdfs dfs -rm -f -r -skipTrash ${TMP}
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rm concepts.csv
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rm categories.csv
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rm contexts.csv
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echo "Finito!"
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echo "Finito!"
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@ -47,7 +47,10 @@ from ${openaire_db_name}.publication p
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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CREATE TABLE ${stats_db_name}.publication_concepts AS
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CREATE TABLE ${stats_db_name}.publication_concepts AS
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SELECT substr(p.id, 4) as id, contexts.context.id as concept
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SELECT substr(p.id, 4) as id, case
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when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
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when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
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when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
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from ${openaire_db_name}.publication p
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from ${openaire_db_name}.publication p
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LATERAL VIEW explode(p.context) contexts as context
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LATERAL VIEW explode(p.context) contexts as context
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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@ -54,7 +54,10 @@ FROM ${openaire_db_name}.dataset p
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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CREATE TABLE ${stats_db_name}.dataset_concepts AS
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CREATE TABLE ${stats_db_name}.dataset_concepts AS
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SELECT substr(p.id, 4) as id, contexts.context.id as concept
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SELECT substr(p.id, 4) as id, case
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when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
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when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
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when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
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from ${openaire_db_name}.dataset p
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from ${openaire_db_name}.dataset p
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LATERAL VIEW explode(p.context) contexts as context
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LATERAL VIEW explode(p.context) contexts as context
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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@ -54,7 +54,10 @@ FROM ${openaire_db_name}.software p
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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CREATE TABLE ${stats_db_name}.software_concepts AS
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CREATE TABLE ${stats_db_name}.software_concepts AS
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SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
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SELECT substr(p.id, 4) as id, case
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when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
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when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
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when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
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FROM ${openaire_db_name}.software p
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FROM ${openaire_db_name}.software p
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LATERAL VIEW explode(p.context) contexts AS context
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LATERAL VIEW explode(p.context) contexts AS context
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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@ -52,7 +52,10 @@ FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS
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CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS
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SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
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SELECT substr(p.id, 4) as id, case
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when contexts.context.id RLIKE '^[^::]+::[^::]+::.+$' then contexts.context.id
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when contexts.context.id RLIKE '^[^::]+::[^::]+$' then concat(contexts.context.id, '::other')
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when contexts.context.id RLIKE '^[^::]+$' then concat(contexts.context.id, '::other::other') END as concept
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FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context
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FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context
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where p.datainfo.deletedbyinference = false;
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where p.datainfo.deletedbyinference = false;
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