forked from D-Net/dnet-hadoop
implementation of the decisional tree, addition of the dnet-openaire-data-protos module, definition of the person proto, blockprocessor and paceconfig modified with addition of support for the tree processing
This commit is contained in:
Michele De Bonis
parent
3d4372ced9
commit
39613dbbd6
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{"type_source": "SVN", "goal": "package -U source:jar",
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"url": "http://svn-public.driver.research-infrastructures.eu/driver/dnet45/modules/dnet-openaire-data-protos/trunk/", "deploy_repository": "dnet45-snapshots", "version": "4", "mail": "sandro.labruzzo@isti.cnr.it,michele.artini@isti.cnr.it, claudio.atzori@isti.cnr.it, alessia.bardi@isti.cnr.it", "deploy_repository_url": "http://maven.research-infrastructures.eu/nexus/content/repositories/dnet45-snapshots", "name": "dnet-openaire-data-protos"}
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<groupId>eu.dnetlib</groupId>
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<artifactId>dnet-openaire-data-protos</artifactId>
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<version>3.9.4-CUSTOM</version>
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||||
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|
||||
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||||
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|
||||
|
||||
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|
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|
||||
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|
||||
|
||||
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|
||||
getDescriptorForType() {
|
||||
return eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata.getDescriptor();
|
||||
}
|
||||
|
||||
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|
||||
return eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata.getDefaultInstance();
|
||||
}
|
||||
|
||||
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|
||||
eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata result = buildPartial();
|
||||
if (!result.isInitialized()) {
|
||||
throw newUninitializedMessageException(result);
|
||||
}
|
||||
return result;
|
||||
}
|
||||
|
||||
private eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata buildParsed()
|
||||
throws com.google.protobuf.InvalidProtocolBufferException {
|
||||
eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata result = buildPartial();
|
||||
if (!result.isInitialized()) {
|
||||
throw newUninitializedMessageException(
|
||||
result).asInvalidProtocolBufferException();
|
||||
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|
||||
return result;
|
||||
}
|
||||
|
||||
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|
||||
eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata result = new eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata(this);
|
||||
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|
||||
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|
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||||
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|
||||
result.semantics_ = semantics_;
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
return mergeFrom((eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata)other);
|
||||
} else {
|
||||
super.mergeFrom(other);
|
||||
return this;
|
||||
}
|
||||
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|
||||
|
||||
public Builder mergeFrom(eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata other) {
|
||||
if (other == eu.dnetlib.data.proto.RelMetadataProtos.RelMetadata.getDefaultInstance()) return this;
|
||||
if (other.hasSemantics()) {
|
||||
mergeSemantics(other.getSemantics());
|
||||
}
|
||||
if (other.hasStartdate()) {
|
||||
setStartdate(other.getStartdate());
|
||||
}
|
||||
if (other.hasEnddate()) {
|
||||
setEnddate(other.getEnddate());
|
||||
}
|
||||
this.mergeUnknownFields(other.getUnknownFields());
|
||||
return this;
|
||||
}
|
||||
|
||||
public final boolean isInitialized() {
|
||||
if (hasSemantics()) {
|
||||
if (!getSemantics().isInitialized()) {
|
||||
|
||||
return false;
|
||||
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|
||||
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|
||||
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|
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||||
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|
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com.google.protobuf.ExtensionRegistryLite extensionRegistry)
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onChanged();
|
||||
return this;
|
||||
}
|
||||
break;
|
||||
}
|
||||
case 10: {
|
||||
eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.Builder subBuilder = eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.newBuilder();
|
||||
if (hasSemantics()) {
|
||||
subBuilder.mergeFrom(getSemantics());
|
||||
}
|
||||
input.readMessage(subBuilder, extensionRegistry);
|
||||
setSemantics(subBuilder.buildPartial());
|
||||
break;
|
||||
}
|
||||
case 26: {
|
||||
bitField0_ |= 0x00000002;
|
||||
startdate_ = input.readBytes();
|
||||
break;
|
||||
}
|
||||
case 34: {
|
||||
bitField0_ |= 0x00000004;
|
||||
enddate_ = input.readBytes();
|
||||
break;
|
||||
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|
||||
}
|
||||
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|
||||
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|
||||
|
||||
private int bitField0_;
|
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|
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|
||||
private eu.dnetlib.data.proto.FieldTypeProtos.Qualifier semantics_ = eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.getDefaultInstance();
|
||||
private com.google.protobuf.SingleFieldBuilder<
|
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|
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|
||||
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|
||||
return semantics_;
|
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|
||||
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|
||||
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|
||||
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|
||||
public Builder setSemantics(eu.dnetlib.data.proto.FieldTypeProtos.Qualifier value) {
|
||||
if (semanticsBuilder_ == null) {
|
||||
if (value == null) {
|
||||
throw new NullPointerException();
|
||||
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|
||||
semantics_ = value;
|
||||
onChanged();
|
||||
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|
||||
semanticsBuilder_.setMessage(value);
|
||||
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|
||||
bitField0_ |= 0x00000001;
|
||||
return this;
|
||||
}
|
||||
public Builder setSemantics(
|
||||
eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.Builder builderForValue) {
|
||||
if (semanticsBuilder_ == null) {
|
||||
semantics_ = builderForValue.build();
|
||||
onChanged();
|
||||
} else {
|
||||
semanticsBuilder_.setMessage(builderForValue.build());
|
||||
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|
||||
bitField0_ |= 0x00000001;
|
||||
return this;
|
||||
}
|
||||
public Builder mergeSemantics(eu.dnetlib.data.proto.FieldTypeProtos.Qualifier value) {
|
||||
if (semanticsBuilder_ == null) {
|
||||
if (((bitField0_ & 0x00000001) == 0x00000001) &&
|
||||
semantics_ != eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.getDefaultInstance()) {
|
||||
semantics_ =
|
||||
eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.newBuilder(semantics_).mergeFrom(value).buildPartial();
|
||||
} else {
|
||||
semantics_ = value;
|
||||
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|
||||
onChanged();
|
||||
} else {
|
||||
semanticsBuilder_.mergeFrom(value);
|
||||
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|
||||
bitField0_ |= 0x00000001;
|
||||
return this;
|
||||
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|
||||
public Builder clearSemantics() {
|
||||
if (semanticsBuilder_ == null) {
|
||||
semantics_ = eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.getDefaultInstance();
|
||||
onChanged();
|
||||
} else {
|
||||
semanticsBuilder_.clear();
|
||||
}
|
||||
bitField0_ = (bitField0_ & ~0x00000001);
|
||||
return this;
|
||||
}
|
||||
public eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.Builder getSemanticsBuilder() {
|
||||
bitField0_ |= 0x00000001;
|
||||
onChanged();
|
||||
return getSemanticsFieldBuilder().getBuilder();
|
||||
}
|
||||
public eu.dnetlib.data.proto.FieldTypeProtos.QualifierOrBuilder getSemanticsOrBuilder() {
|
||||
if (semanticsBuilder_ != null) {
|
||||
return semanticsBuilder_.getMessageOrBuilder();
|
||||
} else {
|
||||
return semantics_;
|
||||
}
|
||||
}
|
||||
private com.google.protobuf.SingleFieldBuilder<
|
||||
eu.dnetlib.data.proto.FieldTypeProtos.Qualifier, eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.Builder, eu.dnetlib.data.proto.FieldTypeProtos.QualifierOrBuilder>
|
||||
getSemanticsFieldBuilder() {
|
||||
if (semanticsBuilder_ == null) {
|
||||
semanticsBuilder_ = new com.google.protobuf.SingleFieldBuilder<
|
||||
eu.dnetlib.data.proto.FieldTypeProtos.Qualifier, eu.dnetlib.data.proto.FieldTypeProtos.Qualifier.Builder, eu.dnetlib.data.proto.FieldTypeProtos.QualifierOrBuilder>(
|
||||
semantics_,
|
||||
getParentForChildren(),
|
||||
isClean());
|
||||
semantics_ = null;
|
||||
}
|
||||
return semanticsBuilder_;
|
||||
}
|
||||
|
||||
// optional string startdate = 3;
|
||||
private java.lang.Object startdate_ = "";
|
||||
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|
||||
return ((bitField0_ & 0x00000002) == 0x00000002);
|
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|
||||
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|
||||
if (!(ref instanceof String)) {
|
||||
String s = ((com.google.protobuf.ByteString) ref).toStringUtf8();
|
||||
startdate_ = s;
|
||||
return s;
|
||||
} else {
|
||||
return (String) ref;
|
||||
}
|
||||
}
|
||||
public Builder setStartdate(String value) {
|
||||
if (value == null) {
|
||||
throw new NullPointerException();
|
||||
}
|
||||
bitField0_ |= 0x00000002;
|
||||
startdate_ = value;
|
||||
onChanged();
|
||||
return this;
|
||||
}
|
||||
public Builder clearStartdate() {
|
||||
bitField0_ = (bitField0_ & ~0x00000002);
|
||||
startdate_ = getDefaultInstance().getStartdate();
|
||||
onChanged();
|
||||
return this;
|
||||
}
|
||||
void setStartdate(com.google.protobuf.ByteString value) {
|
||||
bitField0_ |= 0x00000002;
|
||||
startdate_ = value;
|
||||
onChanged();
|
||||
}
|
||||
|
||||
// optional string enddate = 4;
|
||||
private java.lang.Object enddate_ = "";
|
||||
public boolean hasEnddate() {
|
||||
return ((bitField0_ & 0x00000004) == 0x00000004);
|
||||
}
|
||||
public String getEnddate() {
|
||||
java.lang.Object ref = enddate_;
|
||||
if (!(ref instanceof String)) {
|
||||
String s = ((com.google.protobuf.ByteString) ref).toStringUtf8();
|
||||
enddate_ = s;
|
||||
return s;
|
||||
} else {
|
||||
return (String) ref;
|
||||
}
|
||||
}
|
||||
public Builder setEnddate(String value) {
|
||||
if (value == null) {
|
||||
throw new NullPointerException();
|
||||
}
|
||||
bitField0_ |= 0x00000004;
|
||||
enddate_ = value;
|
||||
onChanged();
|
||||
return this;
|
||||
}
|
||||
public Builder clearEnddate() {
|
||||
bitField0_ = (bitField0_ & ~0x00000004);
|
||||
enddate_ = getDefaultInstance().getEnddate();
|
||||
onChanged();
|
||||
return this;
|
||||
}
|
||||
void setEnddate(com.google.protobuf.ByteString value) {
|
||||
bitField0_ |= 0x00000004;
|
||||
enddate_ = value;
|
||||
onChanged();
|
||||
}
|
||||
|
||||
// @@protoc_insertion_point(builder_scope:eu.dnetlib.data.proto.RelMetadata)
|
||||
}
|
||||
|
||||
static {
|
||||
defaultInstance = new RelMetadata(true);
|
||||
defaultInstance.initFields();
|
||||
}
|
||||
|
||||
// @@protoc_insertion_point(class_scope:eu.dnetlib.data.proto.RelMetadata)
|
||||
}
|
||||
|
||||
private static com.google.protobuf.Descriptors.Descriptor
|
||||
internal_static_eu_dnetlib_data_proto_RelMetadata_descriptor;
|
||||
private static
|
||||
com.google.protobuf.GeneratedMessage.FieldAccessorTable
|
||||
internal_static_eu_dnetlib_data_proto_RelMetadata_fieldAccessorTable;
|
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"to\032\017FieldType.proto\"f\n\013RelMetadata\0223\n\tse" +
|
||||
"mantics\030\001 \001(\0132 .eu.dnetlib.data.proto.Qu" +
|
||||
"alifier\022\021\n\tstartdate\030\003 \001(\t\022\017\n\007enddate\030\004 " +
|
||||
"\001(\tB*\n\025eu.dnetlib.data.protoB\021RelMetadat" +
|
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|
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|
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|
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|
|
@ -0,0 +1,228 @@
|
|||
// Generated by the protocol buffer compiler. DO NOT EDIT!
|
||||
// source: RelType.proto
|
||||
|
||||
package eu.dnetlib.data.proto;
|
||||
|
||||
public final class RelTypeProtos {
|
||||
private RelTypeProtos() {}
|
||||
public static void registerAllExtensions(
|
||||
com.google.protobuf.ExtensionRegistry registry) {
|
||||
}
|
||||
public enum RelType
|
||||
implements com.google.protobuf.ProtocolMessageEnum {
|
||||
datasourceOrganization(0, 1),
|
||||
projectOrganization(1, 4),
|
||||
resultOrganization(2, 5),
|
||||
resultProject(3, 6),
|
||||
resultResult(4, 9),
|
||||
organizationOrganization(5, 11),
|
||||
;
|
||||
|
||||
public static final int datasourceOrganization_VALUE = 1;
|
||||
public static final int projectOrganization_VALUE = 4;
|
||||
public static final int resultOrganization_VALUE = 5;
|
||||
public static final int resultProject_VALUE = 6;
|
||||
public static final int resultResult_VALUE = 9;
|
||||
public static final int organizationOrganization_VALUE = 11;
|
||||
|
||||
|
||||
public final int getNumber() { return value; }
|
||||
|
||||
public static RelType valueOf(int value) {
|
||||
switch (value) {
|
||||
case 1: return datasourceOrganization;
|
||||
case 4: return projectOrganization;
|
||||
case 5: return resultOrganization;
|
||||
case 6: return resultProject;
|
||||
case 9: return resultResult;
|
||||
case 11: return organizationOrganization;
|
||||
default: return null;
|
||||
}
|
||||
}
|
||||
|
||||
public static com.google.protobuf.Internal.EnumLiteMap<RelType>
|
||||
internalGetValueMap() {
|
||||
return internalValueMap;
|
||||
}
|
||||
private static com.google.protobuf.Internal.EnumLiteMap<RelType>
|
||||
internalValueMap =
|
||||
new com.google.protobuf.Internal.EnumLiteMap<RelType>() {
|
||||
public RelType findValueByNumber(int number) {
|
||||
return RelType.valueOf(number);
|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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||||
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||||
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|
||||
public static final com.google.protobuf.Descriptors.EnumDescriptor
|
||||
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|
||||
return eu.dnetlib.data.proto.RelTypeProtos.getDescriptor().getEnumTypes().get(0);
|
||||
}
|
||||
|
||||
private static final RelType[] VALUES = {
|
||||
datasourceOrganization, projectOrganization, resultOrganization, resultProject, resultResult, organizationOrganization,
|
||||
};
|
||||
|
||||
public static RelType valueOf(
|
||||
com.google.protobuf.Descriptors.EnumValueDescriptor desc) {
|
||||
if (desc.getType() != getDescriptor()) {
|
||||
throw new java.lang.IllegalArgumentException(
|
||||
"EnumValueDescriptor is not for this type.");
|
||||
}
|
||||
return VALUES[desc.getIndex()];
|
||||
}
|
||||
|
||||
private final int index;
|
||||
private final int value;
|
||||
|
||||
private RelType(int index, int value) {
|
||||
this.index = index;
|
||||
this.value = value;
|
||||
}
|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.RelType)
|
||||
}
|
||||
|
||||
public enum SubRelType
|
||||
implements com.google.protobuf.ProtocolMessageEnum {
|
||||
provision(0, 1),
|
||||
participation(1, 4),
|
||||
outcome(2, 6),
|
||||
similarity(3, 8),
|
||||
publicationDataset(4, 9),
|
||||
affiliation(5, 12),
|
||||
dedup(6, 10),
|
||||
dedupSimilarity(7, 11),
|
||||
supplement(8, 13),
|
||||
part(9, 15),
|
||||
version(10, 16),
|
||||
relationship(11, 17),
|
||||
;
|
||||
|
||||
public static final int provision_VALUE = 1;
|
||||
public static final int participation_VALUE = 4;
|
||||
public static final int outcome_VALUE = 6;
|
||||
public static final int similarity_VALUE = 8;
|
||||
public static final int publicationDataset_VALUE = 9;
|
||||
public static final int affiliation_VALUE = 12;
|
||||
public static final int dedup_VALUE = 10;
|
||||
public static final int dedupSimilarity_VALUE = 11;
|
||||
public static final int supplement_VALUE = 13;
|
||||
public static final int part_VALUE = 15;
|
||||
public static final int version_VALUE = 16;
|
||||
public static final int relationship_VALUE = 17;
|
||||
|
||||
|
||||
public final int getNumber() { return value; }
|
||||
|
||||
public static SubRelType valueOf(int value) {
|
||||
switch (value) {
|
||||
case 1: return provision;
|
||||
case 4: return participation;
|
||||
case 6: return outcome;
|
||||
case 8: return similarity;
|
||||
case 9: return publicationDataset;
|
||||
case 12: return affiliation;
|
||||
case 10: return dedup;
|
||||
case 11: return dedupSimilarity;
|
||||
case 13: return supplement;
|
||||
case 15: return part;
|
||||
case 16: return version;
|
||||
case 17: return relationship;
|
||||
default: return null;
|
||||
}
|
||||
}
|
||||
|
||||
public static com.google.protobuf.Internal.EnumLiteMap<SubRelType>
|
||||
internalGetValueMap() {
|
||||
return internalValueMap;
|
||||
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|
||||
private static com.google.protobuf.Internal.EnumLiteMap<SubRelType>
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
private final int value;
|
||||
|
||||
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|
||||
this.index = index;
|
||||
this.value = value;
|
||||
}
|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.SubRelType)
|
||||
}
|
||||
|
||||
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
"\001\n\007RelType\022\032\n\026datasourceOrganization\020\001\022\027" +
|
||||
"\n\023projectOrganization\020\004\022\026\n\022resultOrganiz" +
|
||||
"ation\020\005\022\021\n\rresultProject\020\006\022\020\n\014resultResu" +
|
||||
"lt\020\t\022\034\n\030organizationOrganization\020\013*\315\001\n\nS" +
|
||||
"ubRelType\022\r\n\tprovision\020\001\022\021\n\rparticipatio" +
|
||||
"n\020\004\022\013\n\007outcome\020\006\022\016\n\nsimilarity\020\010\022\026\n\022publ" +
|
||||
"icationDataset\020\t\022\017\n\013affiliation\020\014\022\t\n\005ded" +
|
||||
"up\020\n\022\023\n\017dedupSimilarity\020\013\022\016\n\nsupplement\020" +
|
||||
"\r\022\010\n\004part\020\017\022\013\n\007version\020\020\022\020\n\014relationship",
|
||||
"\020\021B&\n\025eu.dnetlib.data.protoB\rRelTypeProt" +
|
||||
"os"
|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
|
@ -0,0 +1,109 @@
|
|||
// Generated by the protocol buffer compiler. DO NOT EDIT!
|
||||
// source: SpecialTrust.proto
|
||||
|
||||
package eu.dnetlib.data.proto;
|
||||
|
||||
public final class SpecialTrustProtos {
|
||||
private SpecialTrustProtos() {}
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
NEUTRAL(1, 2),
|
||||
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|
||||
|
||||
public static final int INFINITE_VALUE = 1;
|
||||
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|
||||
|
||||
|
||||
public final int getNumber() { return value; }
|
||||
|
||||
public static SpecialTrust valueOf(int value) {
|
||||
switch (value) {
|
||||
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|
||||
case 2: return NEUTRAL;
|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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||||
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|
||||
|
||||
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|
||||
private final int value;
|
||||
|
||||
private SpecialTrust(int index, int value) {
|
||||
this.index = index;
|
||||
this.value = value;
|
||||
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|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.SpecialTrust)
|
||||
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|
||||
|
||||
|
||||
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||||
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|
||||
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|
||||
static {
|
||||
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|
||||
"\n\022SpecialTrust.proto\022\025eu.dnetlib.data.pr" +
|
||||
"oto*)\n\014SpecialTrust\022\014\n\010INFINITE\020\001\022\013\n\007NEU" +
|
||||
"TRAL\020\002B+\n\025eu.dnetlib.data.protoB\022Special" +
|
||||
"TrustProtos"
|
||||
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||||
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||||
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|
||||
|
|
@ -0,0 +1,118 @@
|
|||
// Generated by the protocol buffer compiler. DO NOT EDIT!
|
||||
// source: Type.proto
|
||||
|
||||
package eu.dnetlib.data.proto;
|
||||
|
||||
public final class TypeProtos {
|
||||
private TypeProtos() {}
|
||||
public static void registerAllExtensions(
|
||||
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|
||||
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|
||||
public enum Type
|
||||
implements com.google.protobuf.ProtocolMessageEnum {
|
||||
datasource(0, 10),
|
||||
organization(1, 20),
|
||||
person(2, 30),
|
||||
project(3, 40),
|
||||
result(4, 50),
|
||||
;
|
||||
|
||||
public static final int datasource_VALUE = 10;
|
||||
public static final int organization_VALUE = 20;
|
||||
public static final int person_VALUE = 30;
|
||||
public static final int project_VALUE = 40;
|
||||
public static final int result_VALUE = 50;
|
||||
|
||||
|
||||
public final int getNumber() { return value; }
|
||||
|
||||
public static Type valueOf(int value) {
|
||||
switch (value) {
|
||||
case 10: return datasource;
|
||||
case 20: return organization;
|
||||
case 30: return person;
|
||||
case 40: return project;
|
||||
case 50: return result;
|
||||
default: return null;
|
||||
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|
||||
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|
||||
|
||||
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|
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public static final com.google.protobuf.Descriptors.EnumDescriptor
|
||||
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|
||||
return eu.dnetlib.data.proto.TypeProtos.getDescriptor().getEnumTypes().get(0);
|
||||
}
|
||||
|
||||
private static final Type[] VALUES = {
|
||||
datasource, organization, person, project, result,
|
||||
};
|
||||
|
||||
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|
||||
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|
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if (desc.getType() != getDescriptor()) {
|
||||
throw new java.lang.IllegalArgumentException(
|
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
private final int index;
|
||||
private final int value;
|
||||
|
||||
private Type(int index, int value) {
|
||||
this.index = index;
|
||||
this.value = value;
|
||||
}
|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.Type)
|
||||
}
|
||||
|
||||
|
||||
public static com.google.protobuf.Descriptors.FileDescriptor
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
descriptor;
|
||||
static {
|
||||
java.lang.String[] descriptorData = {
|
||||
"\n\nType.proto\022\025eu.dnetlib.data.proto*M\n\004T" +
|
||||
"ype\022\016\n\ndatasource\020\n\022\020\n\014organization\020\024\022\n\n" +
|
||||
"\006person\020\036\022\013\n\007project\020(\022\n\n\006result\0202B#\n\025eu" +
|
||||
".dnetlib.data.protoB\nTypeProtos"
|
||||
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|
||||
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|
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|
||||
// @@protoc_insertion_point(outer_class_scope)
|
||||
}
|
||||
|
|
@ -0,0 +1,61 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DatasourceProtos";
|
||||
|
||||
message Datasource {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
|
||||
// common fields
|
||||
optional Qualifier datasourcetype = 15;
|
||||
optional Qualifier openairecompatibility = 17;
|
||||
|
||||
optional StringField officialname = 1;
|
||||
optional StringField englishname = 2;
|
||||
optional StringField websiteurl = 3;
|
||||
optional StringField logourl = 4;
|
||||
optional StringField contactemail = 5;
|
||||
optional StringField namespaceprefix = 7;
|
||||
|
||||
optional StringField latitude = 18;
|
||||
optional StringField longitude = 19;
|
||||
optional StringField dateofvalidation = 20;
|
||||
optional StringField description = 21;
|
||||
|
||||
repeated StructuredProperty subjects = 45;
|
||||
|
||||
// opendoar specific fields (od*)
|
||||
optional StringField odnumberofitems = 9;
|
||||
optional StringField odnumberofitemsdate = 10;
|
||||
optional StringField odpolicies = 12;
|
||||
|
||||
repeated StringField odlanguages = 13;
|
||||
repeated StringField odcontenttypes = 14;
|
||||
repeated StringField accessinfopackage = 6;
|
||||
|
||||
// re3data fields
|
||||
optional StringField releasestartdate = 31;
|
||||
optional StringField releaseenddate = 32;
|
||||
optional StringField missionstatementurl = 33;
|
||||
optional BoolField dataprovider = 34;
|
||||
optional BoolField serviceprovider = 35;
|
||||
optional StringField databaseaccesstype = 36; // {open, restricted or closed}
|
||||
optional StringField datauploadtype = 37; // {open, restricted or closed}
|
||||
optional StringField databaseaccessrestriction = 38; // {feeRequired, registration, other}
|
||||
optional StringField datauploadrestriction = 39; // {feeRequired, registration, other}
|
||||
optional BoolField versioning = 40;
|
||||
optional StringField citationguidelineurl = 41;
|
||||
optional StringField qualitymanagementkind = 42; // {yes, no, uknown}
|
||||
optional StringField pidsystems = 43;
|
||||
optional StringField certificates = 44;
|
||||
|
||||
repeated KeyValue policies = 46;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DatasourceOrganizationProtos";
|
||||
|
||||
message DatasourceOrganization {
|
||||
|
||||
optional Provision provision = 1;
|
||||
|
||||
message Provision {
|
||||
|
||||
enum RelName {
|
||||
isProvidedBy = 1;
|
||||
provides = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DedupProtos";
|
||||
|
||||
message Dedup {
|
||||
|
||||
enum RelName {
|
||||
isMergedIn = 1;
|
||||
merges = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DedupSimilarityProtos";
|
||||
|
||||
message DedupSimilarity {
|
||||
|
||||
enum RelName {
|
||||
isSimilarTo = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,104 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "FieldTypeProtos";
|
||||
|
||||
message StringField {
|
||||
|
||||
required string value = 1;
|
||||
optional DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message BoolField {
|
||||
|
||||
required bool value = 1;
|
||||
optional DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message IntField {
|
||||
|
||||
required int32 value = 1;
|
||||
optional DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message StructuredProperty {
|
||||
|
||||
required string value = 1;
|
||||
optional Qualifier qualifier = 2;
|
||||
optional DataInfo dataInfo = 3;
|
||||
}
|
||||
|
||||
// Generic container for identified values, e.g:
|
||||
// <oaf:hostedBy name="Publications at Bielefeld University" id="opendoar::2294"/>
|
||||
// <oaf:collectedFrom name="Publications at Bielefeld University" id="opendoar::2294"/>
|
||||
message KeyValue {
|
||||
|
||||
required string key = 1;
|
||||
optional string value = 2;
|
||||
|
||||
optional DataInfo dataInfo = 3;
|
||||
}
|
||||
|
||||
message Qualifier {
|
||||
|
||||
optional string classid = 1;
|
||||
optional string classname = 2;
|
||||
optional string schemeid = 3;
|
||||
optional string schemename = 4;
|
||||
|
||||
optional DataInfo dataInfo = 5;
|
||||
}
|
||||
|
||||
message DataInfo {
|
||||
|
||||
optional bool invisible = 6 [default = false];
|
||||
optional bool inferred = 1;
|
||||
optional bool deletedbyinference = 2;
|
||||
optional string trust = 3;
|
||||
optional string inferenceprovenance = 4;
|
||||
|
||||
required Qualifier provenanceaction = 5;
|
||||
}
|
||||
|
||||
message OAIProvenance {
|
||||
|
||||
optional OriginDescription originDescription = 1;
|
||||
|
||||
message OriginDescription {
|
||||
|
||||
optional string harvestDate = 1;
|
||||
optional bool altered = 2 [default = true];
|
||||
|
||||
optional string baseURL = 3;
|
||||
optional string identifier = 4;
|
||||
optional string datestamp = 5;
|
||||
optional string metadataNamespace = 6;
|
||||
|
||||
optional OriginDescription originDescription = 7;
|
||||
}
|
||||
}
|
||||
|
||||
message ExtraInfo {
|
||||
|
||||
required string name = 1;
|
||||
required string typology = 2;
|
||||
required string provenance = 3;
|
||||
optional string trust = 4;
|
||||
|
||||
// json containing a Citation or Statistics
|
||||
optional string value = 5;
|
||||
|
||||
}
|
||||
|
||||
message Author {
|
||||
|
||||
required string fullname = 1;
|
||||
|
||||
optional string name = 2;
|
||||
optional string surname = 3;
|
||||
|
||||
required int32 rank = 4;
|
||||
|
||||
repeated KeyValue pid = 5;
|
||||
repeated StringField affiliation = 6;
|
||||
}
|
||||
|
|
@ -0,0 +1,9 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "KindProtos";
|
||||
|
||||
enum Kind {
|
||||
entity = 1;
|
||||
relation = 2;
|
||||
}
|
||||
|
|
@ -0,0 +1,97 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "Kind.proto";
|
||||
import "FieldType.proto";
|
||||
|
||||
// for Oafentity
|
||||
import "Type.proto";
|
||||
import "Datasource.proto";
|
||||
import "Organization.proto";
|
||||
import "Project.proto";
|
||||
import "Result.proto";
|
||||
|
||||
import "Person.proto";
|
||||
|
||||
// for OafRel
|
||||
import "RelType.proto";
|
||||
import "Datasource_Organization.proto";
|
||||
import "Project_Organization.proto";
|
||||
import "Result_Organization.proto";
|
||||
import "Result_Project.proto";
|
||||
import "Result_Result.proto";
|
||||
import "Organization_Organization.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "OafProtos";
|
||||
|
||||
message Oaf {
|
||||
required Kind kind = 1;
|
||||
|
||||
optional OafEntity entity = 2;
|
||||
optional OafRel rel = 3;
|
||||
|
||||
optional DataInfo dataInfo = 4;
|
||||
|
||||
// used to mark the last update time of this object
|
||||
optional sfixed64 lastupdatetimestamp = 5;
|
||||
}
|
||||
|
||||
message OafEntity {
|
||||
required Type type = 1;
|
||||
required string id = 12;
|
||||
|
||||
repeated string originalId = 8;
|
||||
repeated KeyValue collectedfrom = 9;
|
||||
|
||||
repeated StructuredProperty pid = 10;
|
||||
optional string dateofcollection = 11;
|
||||
optional string dateoftransformation = 13;
|
||||
|
||||
/* Any relation that we want to bundle together with this entity.
|
||||
It's intended to be used only in temporary values in map/red jobs (sequence files, ...)
|
||||
and never persisted values stored in HBase. */
|
||||
repeated OafRel cachedRel = 2;
|
||||
repeated Oaf cachedOafRel = 18;
|
||||
|
||||
optional Datasource datasource = 3;
|
||||
optional Organization organization = 4;
|
||||
optional Project project = 6;
|
||||
optional Result result = 7;
|
||||
|
||||
optional Person person = 5;
|
||||
|
||||
repeated OafEntity children = 16;
|
||||
|
||||
repeated ExtraInfo extraInfo = 15;
|
||||
|
||||
optional OAIProvenance oaiprovenance = 17;
|
||||
}
|
||||
|
||||
|
||||
message OafRel {
|
||||
required RelType relType = 1;
|
||||
required SubRelType subRelType = 19;
|
||||
required string relClass = 20; // one among the SubRel names, e.g. Provision.RelName.isProvidedBy
|
||||
|
||||
required string source = 2;
|
||||
required string target = 3;
|
||||
|
||||
/* if true then is a "child" */
|
||||
required bool child = 4;
|
||||
|
||||
optional OafEntity cachedTarget = 5;
|
||||
|
||||
// needed to have more information that is not included in cachedTarget.
|
||||
optional Oaf cachedOafTarget = 8;
|
||||
|
||||
// Datamodel rels
|
||||
optional DatasourceOrganization datasourceOrganization = 6;
|
||||
optional ProjectOrganization projectOrganization = 9;
|
||||
optional ResultOrganization resultOrganization = 10;
|
||||
optional ResultProject resultProject = 11;
|
||||
optional ResultResult resultResult = 16;
|
||||
optional OrganizationOrganization organizationOrganization = 17;
|
||||
|
||||
repeated KeyValue collectedfrom = 21;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,33 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "OrganizationProtos";
|
||||
|
||||
message Organization {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
optional StringField legalshortname = 1;
|
||||
optional StringField legalname = 2;
|
||||
repeated StringField alternativeNames = 17;
|
||||
optional StringField websiteurl = 3;
|
||||
optional StringField logourl = 4;
|
||||
optional StringField eclegalbody = 5;
|
||||
optional StringField eclegalperson = 6;
|
||||
optional StringField ecnonprofit = 7;
|
||||
optional StringField ecresearchorganization = 8;
|
||||
optional StringField echighereducation = 9;
|
||||
optional StringField ecinternationalorganizationeurinterests = 10;
|
||||
optional StringField ecinternationalorganization = 11;
|
||||
optional StringField ecenterprise = 12;
|
||||
optional StringField ecsmevalidated = 13;
|
||||
optional StringField ecnutscode = 14;
|
||||
|
||||
optional Qualifier country = 16;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,15 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
import "Dedup.proto";
|
||||
import "DedupSimilarity.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "OrganizationOrganizationProtos";
|
||||
|
||||
message OrganizationOrganization {
|
||||
|
||||
optional Dedup dedup = 1;
|
||||
optional DedupSimilarity dedupSimilarity = 2;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,25 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "PersonProtos";
|
||||
|
||||
message Person {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
required string fullname = 1;
|
||||
optional string firstname = 2;
|
||||
optional string lastname = 3;
|
||||
required string pubID = 4;
|
||||
optional string pubDOI = 5;
|
||||
optional string orcid = 6;
|
||||
required int32 rank = 7;
|
||||
|
||||
repeated string coauthors = 8;
|
||||
repeated double topics = 9;
|
||||
required string area = 10;
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,42 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ProjectProtos";
|
||||
|
||||
message Project {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
|
||||
optional StringField websiteurl = 1;
|
||||
optional StringField code = 2;
|
||||
optional StringField acronym = 3;
|
||||
optional StringField title = 4;
|
||||
optional StringField startdate = 5;
|
||||
optional StringField enddate = 6;
|
||||
optional StringField callidentifier = 7;
|
||||
optional StringField keywords = 8;
|
||||
optional StringField duration = 9;
|
||||
optional StringField ecsc39 = 10;
|
||||
optional StringField oamandatepublications = 11;
|
||||
optional StringField ecarticle29_3 = 12;
|
||||
repeated StructuredProperty subjects = 14;
|
||||
|
||||
repeated StringField fundingtree = 15;
|
||||
|
||||
optional Qualifier contracttype = 13;
|
||||
|
||||
optional StringField optional1 = 16;
|
||||
optional StringField optional2 = 17;
|
||||
optional StringField jsonextrainfo = 18;
|
||||
|
||||
optional StringField contactfullname = 19;
|
||||
optional StringField contactfax = 20;
|
||||
optional StringField contactphone = 21;
|
||||
optional StringField contactemail = 22;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ProjectOrganizationProtos";
|
||||
|
||||
message ProjectOrganization {
|
||||
|
||||
optional Participation participation = 1;
|
||||
|
||||
message Participation {
|
||||
|
||||
enum RelName {
|
||||
isParticipant = 1;
|
||||
hasParticipant = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
optional string participantnumber = 2;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,15 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "RelMetadataProtos";
|
||||
|
||||
message RelMetadata {
|
||||
|
||||
optional Qualifier semantics = 1;
|
||||
|
||||
optional string startdate = 3;
|
||||
optional string enddate = 4;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,36 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "RelTypeProtos";
|
||||
|
||||
enum RelType {
|
||||
|
||||
// Datamodel rels
|
||||
datasourceOrganization = 1;
|
||||
projectOrganization = 4;
|
||||
resultOrganization = 5;
|
||||
resultProject = 6;
|
||||
resultResult = 9;
|
||||
organizationOrganization = 11;
|
||||
|
||||
}
|
||||
|
||||
enum SubRelType {
|
||||
|
||||
provision = 1; // datasourceOrganization
|
||||
participation = 4; // projectOrganization
|
||||
outcome = 6; // resultProject
|
||||
similarity = 8; // resultResult
|
||||
publicationDataset = 9; // resultResult
|
||||
affiliation = 12; // resultOrganizaiton
|
||||
|
||||
dedup = 10; // resultResult | organizationOrganization
|
||||
dedupSimilarity = 11; // resultResult | organizationOrganization
|
||||
|
||||
supplement = 13; // resultResult
|
||||
part = 15; // resultResult
|
||||
|
||||
version = 16; // resultResult
|
||||
|
||||
relationship = 17; // catch all
|
||||
}
|
||||
|
|
@ -0,0 +1,128 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultProtos";
|
||||
|
||||
message Result {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
repeated Instance instance = 6;
|
||||
|
||||
repeated ExternalReference externalReference = 7;
|
||||
|
||||
message Metadata {
|
||||
|
||||
repeated Author author = 40;
|
||||
|
||||
// resulttype allows subclassing results into publications | datasets | software
|
||||
optional Qualifier resulttype = 8;
|
||||
|
||||
// common fields
|
||||
optional Qualifier language = 12;
|
||||
repeated Qualifier country = 33;
|
||||
|
||||
repeated StructuredProperty subject = 1;
|
||||
repeated StructuredProperty title = 2;
|
||||
repeated StructuredProperty relevantdate = 3;
|
||||
|
||||
repeated StringField description = 25;
|
||||
optional StringField dateofacceptance = 4;
|
||||
optional StringField publisher = 5;
|
||||
optional StringField embargoenddate = 6;
|
||||
repeated StringField source = 27;
|
||||
repeated StringField fulltext = 29; // remove candidate
|
||||
repeated StringField format = 21;
|
||||
repeated StringField contributor = 30;
|
||||
optional Qualifier resourcetype = 19;
|
||||
repeated StringField coverage = 43;
|
||||
|
||||
repeated Context context = 28;
|
||||
|
||||
// publication specific
|
||||
optional Journal journal = 18;
|
||||
|
||||
// dataset specific
|
||||
optional StringField storagedate = 9;
|
||||
optional StringField device = 26;
|
||||
optional StringField size = 20;
|
||||
optional StringField version = 22;
|
||||
optional StringField lastmetadataupdate = 23;
|
||||
optional StringField metadataversionnumber = 24;
|
||||
repeated GeoLocation geolocation = 44;
|
||||
|
||||
// software specific
|
||||
repeated StringField documentationUrl = 35;
|
||||
repeated StructuredProperty license = 36;
|
||||
optional StringField codeRepositoryUrl = 38;
|
||||
optional Qualifier programmingLanguage = 39;
|
||||
|
||||
// other research products specifics
|
||||
repeated StringField contactperson = 45;
|
||||
repeated StringField contactgroup = 41;
|
||||
repeated StringField tool = 42;
|
||||
|
||||
}
|
||||
|
||||
message Journal {
|
||||
optional string name = 1;
|
||||
optional string issnPrinted = 2;
|
||||
optional string issnOnline = 3;
|
||||
optional string issnLinking = 4;
|
||||
|
||||
optional string ep = 6;
|
||||
optional string iss = 7;
|
||||
optional string sp = 8;
|
||||
optional string vol = 9;
|
||||
|
||||
optional string edition = 10;
|
||||
optional string conferenceplace = 11;
|
||||
optional string conferencedate = 12;
|
||||
|
||||
optional DataInfo dataInfo = 5;
|
||||
}
|
||||
|
||||
// <concept id="egi::vo::alice" />
|
||||
message Context {
|
||||
required string id = 1;
|
||||
repeated DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message Instance {
|
||||
|
||||
optional StringField license = 6;
|
||||
optional Qualifier accessright = 3;
|
||||
optional Qualifier instancetype = 4;
|
||||
|
||||
optional KeyValue hostedby = 5;
|
||||
repeated string url = 9;
|
||||
|
||||
// other research products specific
|
||||
optional string distributionlocation = 12;
|
||||
|
||||
optional KeyValue collectedfrom = 10;
|
||||
optional StringField dateofacceptance = 11;
|
||||
}
|
||||
|
||||
message ExternalReference {
|
||||
|
||||
optional string sitename = 1; // source
|
||||
optional string label = 2; // title
|
||||
optional string url = 3; // text()
|
||||
optional string description = 4; // ?? not mapped yet ??
|
||||
optional Qualifier qualifier = 5; // type
|
||||
optional string refidentifier = 6; // site internal identifier
|
||||
optional string query = 7; // maps the oaf:reference/@query attribute
|
||||
optional DataInfo dataInfo = 8; // ExternalReferences might be also inferred
|
||||
}
|
||||
|
||||
message GeoLocation {
|
||||
|
||||
optional string point = 1;
|
||||
optional string box = 2;
|
||||
optional string place = 3;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultOrganizationProtos";
|
||||
|
||||
message ResultOrganization {
|
||||
|
||||
optional Affiliation affiliation = 1;
|
||||
|
||||
message Affiliation {
|
||||
|
||||
enum RelName {
|
||||
isAuthorInstitutionOf = 1; // Organization --> Result
|
||||
hasAuthorInstitution = 2; // Result --> Organization
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultProjectProtos";
|
||||
|
||||
message ResultProject {
|
||||
|
||||
optional Outcome outcome = 1;
|
||||
|
||||
message Outcome {
|
||||
|
||||
enum RelName {
|
||||
isProducedBy = 1;
|
||||
produces = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,94 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
import "Dedup.proto";
|
||||
import "DedupSimilarity.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultResultProtos";
|
||||
|
||||
message ResultResult {
|
||||
|
||||
//choice of the possible subtypes
|
||||
optional Similarity similarity = 2;
|
||||
optional PublicationDataset publicationDataset = 3;
|
||||
optional Dedup dedup = 4;
|
||||
optional DedupSimilarity dedupSimilarity = 5;
|
||||
|
||||
optional Supplement supplement = 6;
|
||||
optional Part part = 7;
|
||||
|
||||
optional Relationship relationship = 8;
|
||||
|
||||
optional SoftwareSoftware softwareSoftware = 9;
|
||||
|
||||
message Similarity {
|
||||
|
||||
enum RelName {
|
||||
isAmongTopNSimilarDocuments = 1;
|
||||
hasAmongTopNSimilarDocuments = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
// level of similarity: coefficient from [0, 1] range,
|
||||
// the greater the number, the more similar the documents
|
||||
optional float similarity = 2;
|
||||
|
||||
enum Type {
|
||||
STANDARD = 1;
|
||||
WEBUSAGE = 2;
|
||||
}
|
||||
|
||||
// similarity type
|
||||
optional Type type = 3 [default = STANDARD];
|
||||
}
|
||||
|
||||
message PublicationDataset {
|
||||
|
||||
enum RelName {
|
||||
isRelatedTo = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message Supplement {
|
||||
|
||||
enum RelName {
|
||||
isSupplementTo = 1;
|
||||
isSupplementedBy = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message Part {
|
||||
|
||||
enum RelName {
|
||||
isPartOf = 1;
|
||||
hasPart = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message SoftwareSoftware {
|
||||
|
||||
enum RelName {
|
||||
isVersionOf = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message Relationship {
|
||||
|
||||
enum RelName {
|
||||
isRelatedTo = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,9 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "SpecialTrustProtos";
|
||||
|
||||
enum SpecialTrust {
|
||||
INFINITE = 1;
|
||||
NEUTRAL = 2;
|
||||
}
|
||||
|
|
@ -0,0 +1,13 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "TypeProtos";
|
||||
|
||||
// entity tags are used as rowkey prefixes on hbase
|
||||
enum Type {
|
||||
datasource = 10;
|
||||
organization = 20;
|
||||
person = 30;
|
||||
project = 40;
|
||||
result = 50;
|
||||
}
|
||||
|
|
@ -1,25 +1,17 @@
|
|||
package eu.dnetlib.pace.clustering;
|
||||
|
||||
import java.io.Serializable;
|
||||
import com.google.common.collect.Sets;
|
||||
import eu.dnetlib.pace.common.AbstractPaceFunctions;
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.Person;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import eu.dnetlib.pace.model.FieldList;
|
||||
import eu.dnetlib.pace.model.FieldValue;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import com.google.common.base.Splitter;
|
||||
import com.google.common.collect.Iterables;
|
||||
import com.google.common.collect.Sets;
|
||||
|
||||
import eu.dnetlib.pace.common.AbstractPaceFunctions;
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.gt.Author;
|
||||
import eu.dnetlib.pace.model.gt.GTAuthor;
|
||||
|
||||
@ClusteringClass("personclustering")
|
||||
@ClusteringClass("personClustering")
|
||||
public class PersonClustering extends AbstractPaceFunctions implements ClusteringFunction {
|
||||
|
||||
private Map<String, Integer> params;
|
||||
|
|
@ -36,14 +28,13 @@ public class PersonClustering extends AbstractPaceFunctions implements Clusterin
|
|||
|
||||
for (final Field f : fields) {
|
||||
|
||||
final GTAuthor gta = GTAuthor.fromOafJson(f.stringValue());
|
||||
final Person person = new Person(f.stringValue(), false);
|
||||
|
||||
final Author a = gta.getAuthor();
|
||||
if (a.isWellFormed()) {
|
||||
hashes.add(firstLC(a.getFirstname()) + a.getSecondnames().toLowerCase());
|
||||
if (StringUtils.isNotBlank(person.getNormalisedFirstName()) && StringUtils.isNotBlank(person.getNormalisedSurname())) {
|
||||
hashes.add(firstLC(person.getNormalisedFirstName()) + person.getNormalisedSurname().toLowerCase());
|
||||
} else {
|
||||
for (final String token1 : tokens(a.getFullname())) {
|
||||
for (final String token2 : tokens(a.getFullname())) {
|
||||
for (final String token1 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
for (final String token2 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
if (!token1.equals(token2)) {
|
||||
hashes.add(firstLC(token1) + token2);
|
||||
}
|
||||
|
|
@ -55,13 +46,31 @@ public class PersonClustering extends AbstractPaceFunctions implements Clusterin
|
|||
return hashes;
|
||||
}
|
||||
|
||||
private String firstLC(final String s) {
|
||||
return StringUtils.substring(s, 0, 1).toLowerCase();
|
||||
}
|
||||
|
||||
private Iterable<String> tokens(final String s) {
|
||||
return Iterables.limit(Splitter.on(" ").omitEmptyStrings().trimResults().split(s), MAX_TOKENS);
|
||||
}
|
||||
// @Override
|
||||
// public Collection<String> apply(final List<Field> fields) {
|
||||
// final Set<String> hashes = Sets.newHashSet();
|
||||
//
|
||||
// for (final Field f : fields) {
|
||||
//
|
||||
// final GTAuthor gta = GTAuthor.fromOafJson(f.stringValue());
|
||||
//
|
||||
// final Author a = gta.getAuthor();
|
||||
//
|
||||
// if (StringUtils.isNotBlank(a.getFirstname()) && StringUtils.isNotBlank(a.getSecondnames())) {
|
||||
// hashes.add(firstLC(a.getFirstname()) + a.getSecondnames().toLowerCase());
|
||||
// } else {
|
||||
// for (final String token1 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
// for (final String token2 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
// if (!token1.equals(token2)) {
|
||||
// hashes.add(firstLC(token1) + token2);
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
//
|
||||
// return hashes;
|
||||
// }
|
||||
|
||||
@Override
|
||||
public Map<String, Integer> getParams() {
|
||||
|
|
|
|||
|
|
@ -1,6 +1,7 @@
|
|||
package eu.dnetlib.pace.common;
|
||||
|
||||
import com.google.common.base.Joiner;
|
||||
import com.google.common.base.Splitter;
|
||||
import com.google.common.collect.Iterables;
|
||||
import com.google.common.collect.Lists;
|
||||
import com.google.common.collect.Sets;
|
||||
|
|
@ -12,7 +13,6 @@ import eu.dnetlib.pace.model.FieldListImpl;
|
|||
import org.apache.commons.collections.CollectionUtils;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
import org.apache.commons.math3.stat.descriptive.SummaryStatistics;
|
||||
|
||||
import java.text.Normalizer;
|
||||
import java.util.*;
|
||||
|
|
@ -258,4 +258,13 @@ public abstract class AbstractPaceFunctions {
|
|||
return codes;
|
||||
}
|
||||
|
||||
protected String firstLC(final String s) {
|
||||
return StringUtils.substring(s, 0, 1).toLowerCase();
|
||||
}
|
||||
|
||||
protected Iterable<String> tokens(final String s, final int maxTokens) {
|
||||
return Iterables.limit(Splitter.on(" ").omitEmptyStrings().trimResults().split(s), maxTokens);
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,20 +1,21 @@
|
|||
package eu.dnetlib.pace.config;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import com.google.common.collect.Lists;
|
||||
import com.google.common.collect.Maps;
|
||||
import eu.dnetlib.pace.condition.ConditionAlgo;
|
||||
import eu.dnetlib.pace.model.ClusteringDef;
|
||||
import eu.dnetlib.pace.model.CondDef;
|
||||
import eu.dnetlib.pace.model.FieldDef;
|
||||
import eu.dnetlib.pace.model.TreeNodeDef;
|
||||
import eu.dnetlib.pace.util.PaceResolver;
|
||||
import org.apache.commons.collections.CollectionUtils;
|
||||
import org.codehaus.jackson.annotate.JsonIgnore;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
public class PaceConfig implements Serializable {
|
||||
|
||||
private List<FieldDef> model;
|
||||
|
|
@ -23,6 +24,8 @@ public class PaceConfig implements Serializable {
|
|||
private List<ClusteringDef> clustering;
|
||||
private Map<String, List<String>> blacklists;
|
||||
|
||||
private Map<String, TreeNodeDef> decisionTree;
|
||||
|
||||
private Map<String, FieldDef> modelMap;
|
||||
|
||||
public static PaceResolver paceResolver;
|
||||
|
|
@ -58,6 +61,14 @@ public class PaceConfig implements Serializable {
|
|||
return conditions;
|
||||
}
|
||||
|
||||
public Map<String, TreeNodeDef> getDecisionTree() {
|
||||
return decisionTree;
|
||||
}
|
||||
|
||||
public void setDecisionTree(Map<String, TreeNodeDef> decisionTree) {
|
||||
this.decisionTree = decisionTree;
|
||||
}
|
||||
|
||||
@JsonIgnore
|
||||
public List<ConditionAlgo> getConditionAlgos() {
|
||||
return asConditionAlgos(getConditions());
|
||||
|
|
|
|||
|
|
@ -14,4 +14,11 @@ public interface FieldList extends List<Field>, Field {
|
|||
*/
|
||||
public List<String> stringList();
|
||||
|
||||
/**
|
||||
* Double[] Array
|
||||
*
|
||||
* @return the double[] array
|
||||
*/
|
||||
public double[] doubleArray();
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,21 +1,18 @@
|
|||
package eu.dnetlib.pace.model;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
import java.util.ListIterator;
|
||||
|
||||
import com.google.common.base.Function;
|
||||
import com.google.common.base.Joiner;
|
||||
import com.google.common.base.Predicate;
|
||||
import com.google.common.collect.Iterables;
|
||||
import com.google.common.collect.Lists;
|
||||
|
||||
import com.google.gson.Gson;
|
||||
import com.google.gson.GsonBuilder;
|
||||
import com.google.gson.JsonObject;
|
||||
import eu.dnetlib.pace.config.Type;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
import java.util.ListIterator;
|
||||
|
||||
/**
|
||||
* The Class FieldListImpl.
|
||||
*/
|
||||
|
|
@ -319,6 +316,21 @@ public class FieldListImpl extends AbstractField implements FieldList {
|
|||
};
|
||||
}
|
||||
|
||||
@Override
|
||||
public double[] doubleArray() {
|
||||
return Lists.newArrayList(Iterables.transform(fields, getDouble())).stream().mapToDouble(d-> d).toArray();
|
||||
}
|
||||
|
||||
private Function<Field,Double> getDouble() {
|
||||
|
||||
return new Function<Field, Double>() {
|
||||
@Override
|
||||
public Double apply(final Field f) {
|
||||
return Double.parseDouble(f.stringValue());
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return stringList().toString();
|
||||
|
|
|
|||
|
|
@ -0,0 +1,100 @@
|
|||
package eu.dnetlib.pace.model;
|
||||
|
||||
import eu.dnetlib.pace.config.PaceConfig;
|
||||
import eu.dnetlib.pace.tree.TreeNode;
|
||||
import eu.dnetlib.pace.util.PaceException;
|
||||
import org.codehaus.jackson.map.ObjectMapper;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.Serializable;
|
||||
import java.util.Map;
|
||||
|
||||
public class TreeNodeDef implements Serializable {
|
||||
|
||||
private String name;
|
||||
private String field;
|
||||
|
||||
private String positive;
|
||||
private String negative;
|
||||
private String undefined;
|
||||
|
||||
private Map<String, Number> params;
|
||||
|
||||
public TreeNodeDef() {
|
||||
}
|
||||
|
||||
public TreeNodeDef(String name, String field, String positive, String negative, String undefined, Map<String, Number> params) {
|
||||
this.name = name;
|
||||
this.field = field;
|
||||
this.positive = positive;
|
||||
this.negative = negative;
|
||||
this.undefined = undefined;
|
||||
this.params = params;
|
||||
}
|
||||
|
||||
public TreeNode treeNode() {
|
||||
try {
|
||||
return PaceConfig.paceResolver.getTreeNode(getName(), params);
|
||||
} catch (PaceException e) {
|
||||
e.printStackTrace();
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
public String getName() {
|
||||
return name;
|
||||
}
|
||||
|
||||
public void setName(String name) {
|
||||
this.name = name;
|
||||
}
|
||||
|
||||
public String getField() {
|
||||
return field;
|
||||
}
|
||||
|
||||
public void setField(String field) {
|
||||
this.field = field;
|
||||
}
|
||||
|
||||
public String getPositive() {
|
||||
return positive;
|
||||
}
|
||||
|
||||
public void setPositive(String positive) {
|
||||
this.positive = positive;
|
||||
}
|
||||
|
||||
public String getNegative() {
|
||||
return negative;
|
||||
}
|
||||
|
||||
public void setNegative(String negative) {
|
||||
this.negative = negative;
|
||||
}
|
||||
|
||||
public String getUndefined() {
|
||||
return undefined;
|
||||
}
|
||||
|
||||
public void setUndefined(String undefined) {
|
||||
this.undefined = undefined;
|
||||
}
|
||||
|
||||
public Map<String, Number> getParams() {
|
||||
return params;
|
||||
}
|
||||
|
||||
public void setParams(Map<String, Number> params) {
|
||||
this.params = params;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
try {
|
||||
return new ObjectMapper().writeValueAsString(this);
|
||||
} catch (IOException e) {
|
||||
return e.getStackTrace().toString();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,33 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
public class AbstractTreeNode implements TreeNode {
|
||||
|
||||
Map<String, Number> params;
|
||||
|
||||
public AbstractTreeNode(Map<String, Number> params){
|
||||
this.params = params;
|
||||
}
|
||||
|
||||
@Override
|
||||
public int compare(Field a, Field b) {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public static double stringSimilarity(String s1, String s2) {
|
||||
String longer = s1, shorter = s2;
|
||||
if (s1.length() < s2.length()) { // longer should always have greater length
|
||||
longer = s2; shorter = s1;
|
||||
}
|
||||
int longerLength = longer.length();
|
||||
if (longerLength == 0) //if strings have 0 length return 0 (no similarity)
|
||||
return 0.0;
|
||||
|
||||
return (longerLength - StringUtils.getLevenshteinDistance(longer, shorter)) / (double) longerLength;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,46 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.FieldList;
|
||||
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
@TreeNodeClass("coauthorsMatch")
|
||||
public class CoauthorsMatch extends AbstractTreeNode {
|
||||
|
||||
public CoauthorsMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public int compare(Field a, Field b) {
|
||||
|
||||
final List<String> c1 = ((FieldList) a).stringList();
|
||||
final List<String> c2 = ((FieldList) b).stringList();
|
||||
|
||||
int size1 = c1.size();
|
||||
int size2 = c2.size();
|
||||
|
||||
//few coauthors or too many coauthors
|
||||
if (size1 < params.getOrDefault("minCoauthors", 5).intValue() || size2 < params.getOrDefault("minCoauthors", 5).intValue() || (size1+size2 > params.getOrDefault("maxCoauthors", 200).intValue()))
|
||||
return 0;
|
||||
|
||||
int coauthorship = 0;
|
||||
for (String ca1: c1){
|
||||
|
||||
for (String ca2: c2){
|
||||
|
||||
if (stringSimilarity(ca1.replaceAll("\\.","").replaceAll(" ",""), ca2.replaceAll("\\.","").replaceAll(" ",""))>= params.getOrDefault("simTh", 0.7).doubleValue())
|
||||
coauthorship++;
|
||||
}
|
||||
}
|
||||
|
||||
if (coauthorship>=params.getOrDefault("th", 5).intValue())
|
||||
return 1;
|
||||
else if (coauthorship == 0)
|
||||
return -1;
|
||||
else
|
||||
return 0;
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,25 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
@TreeNodeClass("exactMatch")
|
||||
public class ExactMatch extends AbstractTreeNode {
|
||||
|
||||
public ExactMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public int compare(Field a, Field b) {
|
||||
|
||||
if (a.stringValue().isEmpty() || b.stringValue().isEmpty())
|
||||
return 0;
|
||||
else if (a.stringValue().equals(b.stringValue()))
|
||||
return 1;
|
||||
else
|
||||
return -1;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,36 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
@TreeNodeClass("similar")
|
||||
public class SimilarMatch extends AbstractTreeNode {
|
||||
|
||||
public SimilarMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public int compare(Field a, Field b) {
|
||||
|
||||
if (a.stringValue().isEmpty() || b.stringValue().isEmpty())
|
||||
return 0; //undefined if one name is missing
|
||||
|
||||
//take only the first name
|
||||
String firstname1 = a.stringValue().split(" ")[0];
|
||||
String firstname2 = b.stringValue().split(" ")[0];
|
||||
|
||||
if (firstname1.toLowerCase().trim().replaceAll("\\.","").replaceAll("\\s","").length()<=2 || firstname2.toLowerCase().replaceAll("\\.", "").replaceAll("\\s","").length()<=2) //too short names (considered similar)
|
||||
return 1;
|
||||
|
||||
if (stringSimilarity(firstname1,firstname2)>params.getOrDefault("th", 0.7).doubleValue()){
|
||||
return 1; //similar names, go on with the analysis
|
||||
}
|
||||
else {
|
||||
return -1; //names too different, no need to compare
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,36 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.FieldListImpl;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
@TreeNodeClass("topicsMatch")
|
||||
public class TopicsMatch extends AbstractTreeNode {
|
||||
|
||||
public TopicsMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public int compare(Field a, Field b) {
|
||||
|
||||
double[] t1 = ((FieldListImpl) a).doubleArray();
|
||||
double[] t2 = ((FieldListImpl) b).doubleArray();
|
||||
|
||||
if (t1 == null || t2 == null)
|
||||
return 0; //0 similarity if no topics in one of the authors or in both
|
||||
|
||||
double area = 0.0;
|
||||
|
||||
double min_value[] = new double[t1.length];
|
||||
for(int i=0; i<t1.length; i++){
|
||||
|
||||
min_value[i] = (t1[i]<t2[i])?t1[i]:t2[i];
|
||||
area += min_value[i];
|
||||
}
|
||||
|
||||
return area>params.getOrDefault("th", 0.7).doubleValue()?+1:-1;
|
||||
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
|
||||
public interface TreeNode {
|
||||
|
||||
//compare two fields and returns: +1 if match, 0 if undefined, -1 if do not match
|
||||
public int compare(Field a, Field b);
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,14 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import java.lang.annotation.ElementType;
|
||||
import java.lang.annotation.Retention;
|
||||
import java.lang.annotation.RetentionPolicy;
|
||||
import java.lang.annotation.Target;
|
||||
|
||||
@Retention(RetentionPolicy.RUNTIME)
|
||||
@Target(ElementType.TYPE)
|
||||
public @interface TreeNodeClass {
|
||||
|
||||
public String value();
|
||||
}
|
||||
|
||||
|
|
@ -0,0 +1,25 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.FieldList;
|
||||
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
@TreeNodeClass("undefined")
|
||||
public class UndefinedNode implements TreeNode {
|
||||
|
||||
Map<String, Number> params;
|
||||
|
||||
@Override
|
||||
public int compare(Field a, Field b) {
|
||||
|
||||
final List<String> sa = ((FieldList) a).stringList();
|
||||
final List<String> sb = ((FieldList) b).stringList();
|
||||
|
||||
System.out.println("sa = " + sa.size());
|
||||
System.out.println("sb = " + sb.size());
|
||||
|
||||
return 0;
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,21 @@
|
|||
package eu.dnetlib.pace.tree.support;
|
||||
|
||||
import eu.dnetlib.pace.util.PaceException;
|
||||
|
||||
public enum MatchType {
|
||||
|
||||
ORCID_MATCH,
|
||||
COAUTHORS_MATCH,
|
||||
TOPICS_MATCH,
|
||||
NO_MATCH;
|
||||
|
||||
public static MatchType getEnum(String value) {
|
||||
|
||||
try {
|
||||
return MatchType.valueOf(value);
|
||||
}
|
||||
catch (IllegalArgumentException e) {
|
||||
throw new PaceException("The match type is not valid");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -9,6 +9,8 @@ import eu.dnetlib.pace.distance.eval.ScoreResult;
|
|||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.MapDocument;
|
||||
import eu.dnetlib.pace.model.MapDocumentComparator;
|
||||
import eu.dnetlib.pace.model.TreeNodeDef;
|
||||
import eu.dnetlib.pace.tree.support.MatchType;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
|
@ -43,12 +45,63 @@ public class BlockProcessor {
|
|||
if (q.size() > 1) {
|
||||
// log.info("reducing key: '" + key + "' records: " + q.size());
|
||||
//process(q, context);
|
||||
process(simplifyQueue(q, key, context), context);
|
||||
|
||||
//process the decision tree if it is specified, otherwise go with conditions and distance algos
|
||||
if (!dedupConf.getPace().getDecisionTree().isEmpty()){
|
||||
processPersons(q, context);
|
||||
}
|
||||
else {
|
||||
process(simplifyQueue(q, key, context), context);
|
||||
}
|
||||
} else {
|
||||
context.incrementCounter(dedupConf.getWf().getEntityType(), "records per hash key = 1", 1);
|
||||
}
|
||||
}
|
||||
|
||||
private void processPersons(final Queue<MapDocument> queue, final Reporter context) {
|
||||
|
||||
while (!queue.isEmpty()) {
|
||||
|
||||
final MapDocument pivot = queue.remove(); //take first element of the queue
|
||||
final String idPivot = pivot.getIdentifier();
|
||||
|
||||
//compare the first element with all the others
|
||||
for (final MapDocument curr : queue) {
|
||||
final String idCurr = curr.getIdentifier();
|
||||
|
||||
//check if pivot and current element are similar by processing the tree
|
||||
if (navigateTree(pivot, curr))
|
||||
writeSimilarity(context, idPivot, idCurr);
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
private boolean navigateTree(final MapDocument doc1, final MapDocument doc2){
|
||||
|
||||
final Map<String, TreeNodeDef> decisionTree = dedupConf.getPace().getDecisionTree();
|
||||
|
||||
String current = "start";
|
||||
|
||||
while (!current.equals(MatchType.NO_MATCH.toString()) && !current.equals(MatchType.ORCID_MATCH.toString()) && !current.equals(MatchType.TOPICS_MATCH.toString()) && !current.equals(MatchType.COAUTHORS_MATCH.toString())) {
|
||||
|
||||
TreeNodeDef currentNode = decisionTree.get(current);
|
||||
//throw an exception if the node doesn't exist
|
||||
if (currentNode == null)
|
||||
throw new PaceException("The Tree Node doesn't exist: " + current);
|
||||
|
||||
int compare = currentNode.treeNode().compare(doc1.getFieldMap().get(currentNode.getField()), doc2.getFieldMap().get(currentNode.getField()));
|
||||
|
||||
current = (compare==0)?currentNode.getUndefined():(compare==-1)?currentNode.getNegative():currentNode.getPositive();
|
||||
}
|
||||
|
||||
if (!current.equals(MatchType.NO_MATCH.toString()))
|
||||
return true;
|
||||
else
|
||||
return false;
|
||||
}
|
||||
|
||||
private Queue<MapDocument> prepare(final Iterable<MapDocument> documents) {
|
||||
final Queue<MapDocument> queue = new PriorityQueue<>(100, new MapDocumentComparator(dedupConf.getWf().getOrderField()));
|
||||
|
||||
|
|
|
|||
|
|
@ -6,4 +6,8 @@ public class PaceException extends RuntimeException {
|
|||
super(s, e);
|
||||
}
|
||||
|
||||
public PaceException(String s){
|
||||
super(s);
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -7,6 +7,8 @@ import eu.dnetlib.pace.condition.ConditionClass;
|
|||
import eu.dnetlib.pace.distance.DistanceAlgo;
|
||||
import eu.dnetlib.pace.distance.DistanceClass;
|
||||
import eu.dnetlib.pace.model.FieldDef;
|
||||
import eu.dnetlib.pace.tree.TreeNode;
|
||||
import eu.dnetlib.pace.tree.TreeNodeClass;
|
||||
import org.reflections.Reflections;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
|
@ -20,6 +22,7 @@ public class PaceResolver implements Serializable {
|
|||
private final Map<String, Class<ClusteringFunction>> clusteringFunctions;
|
||||
private final Map<String, Class<ConditionAlgo>> conditionAlgos;
|
||||
private final Map<String, Class<DistanceAlgo>> distanceAlgos;
|
||||
private final Map<String, Class<TreeNode>> treeNodes;
|
||||
|
||||
public PaceResolver() {
|
||||
|
||||
|
|
@ -34,13 +37,17 @@ public class PaceResolver implements Serializable {
|
|||
this.distanceAlgos = new Reflections("eu.dnetlib").getTypesAnnotatedWith(DistanceClass.class).stream()
|
||||
.filter(DistanceAlgo.class::isAssignableFrom)
|
||||
.collect(Collectors.toMap(cl -> cl.getAnnotation(DistanceClass.class).value(), cl -> (Class<DistanceAlgo>)cl));
|
||||
|
||||
this.treeNodes = new Reflections("eu.dnetlib").getTypesAnnotatedWith(TreeNodeClass.class).stream()
|
||||
.filter(TreeNode.class::isAssignableFrom)
|
||||
.collect(Collectors.toMap(cl -> cl.getAnnotation(TreeNodeClass.class).value(), cl -> (Class<TreeNode>) cl));
|
||||
}
|
||||
|
||||
public ClusteringFunction getClusteringFunction(String name, Map<String, Integer> params) throws PaceException {
|
||||
try {
|
||||
return clusteringFunctions.get(name).getDeclaredConstructor(Map.class).newInstance(params);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException e) {
|
||||
throw new PaceException(name + "not found", e);
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -48,7 +55,7 @@ public class PaceResolver implements Serializable {
|
|||
try {
|
||||
return distanceAlgos.get(name).getDeclaredConstructor(Map.class).newInstance(params);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException e) {
|
||||
throw new PaceException(name + "not found", e);
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -56,7 +63,15 @@ public class PaceResolver implements Serializable {
|
|||
try {
|
||||
return conditionAlgos.get(name).getDeclaredConstructor(String.class, List.class).newInstance(name, fields);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException e) {
|
||||
throw new PaceException(name + "not found", e);
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
public TreeNode getTreeNode(String name, Map<String, Number> params) throws PaceException {
|
||||
try {
|
||||
return treeNodes.get(name).getDeclaredConstructor(Map.class).newInstance(params);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException | NullPointerException e) {
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue