diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor-post.sh b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor-post.sh index b8c71681a..dd82310e0 100644 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor-post.sh +++ b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/monitor-post.sh @@ -11,11 +11,11 @@ export TARGET=$2 export SHADOW=$3 impala-shell -q "invalidate metadata;" -impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/compute stats ${TARGET}.\1;/" | impala-shell -f - -echo "Impala shell finished" - -echo "Updating shadow monitor database" -impala-shell -q "create database if not exists ${SHADOW}" -impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f - -impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" | impala-shell -f - -echo "Shadow db ready!" \ No newline at end of file +#impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/compute stats ${TARGET}.\1;/" | impala-shell -f - +#echo "Impala shell finished" +# +#echo "Updating shadow monitor database" +#impala-shell -q "create database if not exists ${SHADOW}" +#impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f - +#impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" | impala-shell -f - +#echo "Shadow db ready!" \ No newline at end of file diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/scripts/createMonitorDB.sql b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/scripts/createMonitorDB.sql new file mode 100644 index 000000000..7a27b0ea5 --- /dev/null +++ b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/scripts/createMonitorDB.sql @@ -0,0 +1,149 @@ +DROP TABLE IF EXISTS TARGET.result_new; + +create table TARGET.result_new stored as parquet as + select distinct * from ( + select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id) + union all + select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id) + union all + select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in ( +-- 'openorgs____::b8b8ca674452579f3f593d9f5e557483', -- University College Cork + 'openorgs____::38d7097854736583dde879d12dacafca' -- Brown University + ) )) foo; + +ANALYZE TABLE TARGET.result_new COMPUTE STATISTICS; + +INSERT INTO TARGET.result select * from TARGET.result_new; + +INSERT INTO TARGET.result_citations select * from TARGET.result_citations orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS; + +INSERT INTO TARGET.result_references_oc select * from TARGET.result_references_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS; + +INSERT INTO TARGET.result_citations_oc select * from TARGET.result_citations_oc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS; + +INSERT INTO TARGET.result_classifications select * from TARGET.result_classifications orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS; + +INSERT INTO TARGET.result_apc select * from TARGET.result_apc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS; + +INSERT INTO TARGET.result_concepts select * from TARGET.result_concepts orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS; + +INSERT INTO TARGET.result_datasources select * from TARGET.result_datasources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS; + +INSERT INTO TARGET.result_fundercount select * from TARGET.result_fundercount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS; + +INSERT INTO TARGET.result_gold select * from TARGET.result_gold orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS; + +INSERT INTO TARGET.result_greenoa select * from TARGET.result_greenoa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS; + +INSERT INTO TARGET.result_languages select * from TARGET.result_languages orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS; + +INSERT INTO TARGET.result_licenses select * from TARGET.result_licenses orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS; + +INSERT INTO TARGET.result_oids select * from TARGET.result_oids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS; + +INSERT INTO TARGET.result_organization select * from TARGET.result_organization orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS; + +INSERT INTO TARGET.result_peerreviewed select * from TARGET.result_peerreviewed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS; + +INSERT INTO TARGET.result_pids select * from TARGET.result_pids orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS; + +INSERT INTO TARGET.result_projectcount select * from TARGET.result_projectcount orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS; + +INSERT INTO TARGET.result_projects select * from TARGET.result_projects orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS; + +INSERT INTO TARGET.result_refereed select * from TARGET.result_refereed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS; + +INSERT INTO TARGET.result_sources select * from TARGET.result_sources orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS; + +INSERT INTO TARGET.result_topics select * from TARGET.result_topics orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS; + +INSERT INTO TARGET.result_fos select * from TARGET.result_fos orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS; + +create view TARGET.foo1 as select * from TARGET.result_result rr where rr.source in (select id from TARGET.result_new); +create view TARGET.foo2 as select * from TARGET.result_result rr where rr.target in (select id from TARGET.result_new); +INSERT INTO TARGET.result_result select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou; +drop view TARGET.foo1; +drop view TARGET.foo2; +ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS; + + +-- indicators +-- Sprint 1 ---- +INSERT INTO TARGET.indi_pub_green_oa select * from TARGET.indi_pub_green_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_grey_lit select * from TARGET.indi_pub_grey_lit orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_doi_from_crossref select * from TARGET.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS; +-- Sprint 2 ---- +INSERT INTO TARGET.indi_result_has_cc_licence select * from TARGET.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS; +INSERT INTO TARGET.indi_result_has_cc_licence_url select * from TARGET.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_has_abstract select * from TARGET.indi_pub_has_abstract orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS; +INSERT INTO TARGET.indi_result_with_orcid select * from TARGET.indi_result_with_orcid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS; +---- Sprint 3 ---- +INSERT INTO TARGET.indi_funded_result_with_fundref select * from TARGET.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS; +---- Sprint 4 ---- +INSERT INTO TARGET.indi_pub_diamond select * from TARGET.indi_pub_diamond orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_in_transformative select * from TARGET.indi_pub_in_transformative orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_closed_other_open select * from TARGET.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS; +---- Sprint 5 ---- +INSERT INTO TARGET.indi_result_no_of_copies select * from TARGET.indi_result_no_of_copies orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS; +---- Sprint 6 ---- +INSERT INTO TARGET.indi_pub_hybrid_oa_with_cc select * from TARGET.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_downloads select * from TARGET.indi_pub_downloads orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); +ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_downloads_datasource select * from TARGET.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); +ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_downloads_year select * from TARGET.indi_pub_downloads_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); +ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_downloads_datasource_year select * from TARGET.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result_new r where r.id=orig.result_id); +ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS; +---- Sprint 7 ---- +INSERT INTO TARGET.indi_pub_gold_oa select * from TARGET.indi_pub_gold_oa orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_hybrid select * from TARGET.indi_pub_hybrid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS; + +INSERT INTO TARGET.indi_pub_has_preprint select * from TARGET.indi_pub_has_preprint orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS; +INSERT INTO TARGET.indi_pub_in_subscribed select * from TARGET.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS; +INSERT INTO TARGET.indi_result_with_pid select * from TARGET.indi_result_with_pid orig where exists (select 1 from TARGET.result_new r where r.id=orig.id); +ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS; +--create table TARGET.indi_datasets_gold_oa stored as parquet as select * from SOURCE.indi_datasets_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--compute stats TARGET.indi_datasets_gold_oa; +--create table TARGET.indi_software_gold_oa stored as parquet as select * from SOURCE.indi_software_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--compute stats TARGET.indi_software_gold_oa; +DROP TABLE TARGET.result_new; diff --git a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/workflow.xml b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/workflow.xml index 7e4cfc759..ab51931b6 100644 --- a/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/workflow.xml +++ b/dhp-workflows/dhp-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/monitor/oozie_app/workflow.xml @@ -89,17 +89,5 @@ - - - ${jobTracker} - ${nameNode} - updateCache.sh - ${stats_tool_api_url} - updateCache.sh - - - - - \ No newline at end of file