forked from D-Net/dnet-hadoop
Merge pull request 'Stats wf executed on hive only' (#283) from antonis.lempesis/dnet-hadoop:beta into beta
Reviewed-on: D-Net/dnet-hadoop#283
This commit is contained in:
commit
0704e186f6
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@ -9,6 +9,8 @@ fi
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CONTEXT_API=$1
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TARGET_DB=$2
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export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=4831838208 -hiveconf spark.yarn.executor.memoryOverhead=450"
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TMP=/tmp/stats-update-`tr -dc A-Za-z0-9 </dev/urandom | head -c 6`
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echo "Downloading context ids"
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@ -29,19 +31,18 @@ hdfs dfs -copyFromLocal categories.csv ${TMP}
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hdfs dfs -copyFromLocal concepts.csv ${TMP}
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hdfs dfs -chmod -R 777 ${TMP}
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export HADOOP_USER="oozie"
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export HADOOP_USER_NAME="oozie"
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echo "Creating and populating impala tables"
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impala-shell -q "invalidate metadata"
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impala-shell -d ${TARGET_DB} -q "invalidate metadata"
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impala-shell -q "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','"
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impala-shell -q "create table ${TARGET_DB}.category (context string, id string, name string) row format delimited fields terminated by ','"
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impala-shell -q "create table ${TARGET_DB}.concept (category string, id string, name string) row format delimited fields terminated by ','"
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impala-shell -d ${TARGET_DB} -q "invalidate metadata"
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impala-shell -q "load data inpath '${TMP}/contexts.csv' into table ${TARGET_DB}.context"
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impala-shell -q "load data inpath '${TMP}/categories.csv' into table ${TARGET_DB}.category"
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impala-shell -q "load data inpath '${TMP}/concepts.csv' into table ${TARGET_DB}.concept"
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hive $HIVE_OPTS -e "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','"
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hive $HIVE_OPTS -e "create table ${TARGET_DB}.category (context string, id string, name string) row format delimited fields terminated by ','"
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hive $HIVE_OPTS -e "create table ${TARGET_DB}.concept (category string, id string, name string) row format delimited fields terminated by ','"
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hive $HIVE_OPTS -e "load data inpath '${TMP}/contexts.csv' into table ${TARGET_DB}.context"
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hive $HIVE_OPTS -e "load data inpath '${TMP}/categories.csv' into table ${TARGET_DB}.category"
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hive $HIVE_OPTS -e "load data inpath '${TMP}/concepts.csv' into table ${TARGET_DB}.concept"
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echo "Cleaning up"
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hdfs dfs -rm -f -r -skipTrash ${TMP}
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rm concepts.csv
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rm categories.csv
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rm contexts.csv
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@ -0,0 +1,62 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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#export HADOOP_USER_NAME="dimitris.pierrakos"
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export HADOOP_USER_NAME=$5
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function copydb() {
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db=$1
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# copy the databases from ocean to impala
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echo "copying $db"
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hadoop distcp -Dmapreduce.map.memory.mb=6144 -pb hdfs://nameservice1/user/hive/warehouse/${db}.db hdfs://impala-cluster-mn1.openaire.eu:8020/tmp
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# change ownership to impala
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hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/${db}.db
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# create the databases
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impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database if exists ${db} cascade";
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impala-shell -i impala-cluster-dn1.openaire.eu -q "create database ${db}";
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impala-shell -q "INVALIDATE METADATA"
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echo "creating schema for ${db}"
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for i in `impala-shell -d ${db} --delimited -q "show tables"`;
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do
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impala-shell -d ${db} --delimited -q "show create table $i";
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done | sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
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# run the same command twice because we may have failures in the first run (due to views pointing to the same db)
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for i in `impala-shell -d ${db} --delimited -q "show tables"`;
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do
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impala-shell -d ${db} --delimited -q "show create table $i";
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done | sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
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# load the data from /tmp in the respective tables
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echo "copying data in tables and computing stats"
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for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`;
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do
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impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "load data inpath '/tmp/${db}.db/$i' into table $i";
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impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "compute stats $i";
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done
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# deleting the remaining directory from hdfs
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hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -rm -R /tmp/${db}.db
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}
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STATS_DB=$1
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MONITOR_DB=$2
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OBSERVATORY_DB=$3
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EXT_DB=$4
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HADOOP_USER_NAME=$5
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copydb $EXT_DB
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copydb $STATS_DB
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copydb $MONITOR_DB
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copydb $OBSERVATORY_DB
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@ -0,0 +1,28 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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function createShadowDB() {
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SOURCE=$1
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SHADOW=$2
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impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database ${SHADOW} CASCADE";
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impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${SHADOW}";
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# impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "show tables" | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f -
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impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f -
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}
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STATS_DB=$1
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STATS_DB_SHADOW=$2
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MONITOR_DB=$3
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MONITOR_DB_SHADOW=$4
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OBSERVATORY_DB=$5
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OBSERVATORY_DB_SHADOW=$6
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createShadowDB $STATS_DB $STATS_DB_SHADOW
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createShadowDB $MONITOR_DB $MONITOR_DB_SHADOW
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createShadowDB $OBSERVATORY_DB $OBSERVATORY_DB_SHADOW
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@ -8,12 +8,12 @@ fi
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export SOURCE=$1
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export SHADOW=$2
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export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
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export HADOOP_USER_NAME="oozie"
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echo "Updating shadow database"
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impala-shell -q "invalidate metadata"
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impala-shell -d ${SOURCE} -q "invalidate metadata"
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impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/^\(.*\)/compute stats ${SOURCE}.\1;/" | impala-shell -c -f -
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impala-shell -q "create database if not exists ${SHADOW}"
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impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -c -f -
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impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f -
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echo "Shadow db ready!"
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hive -e "drop database if exists ${SHADOW} cascade"
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hive -e "create database if not exists ${SHADOW}"
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hive $HIVE_OPTS --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" > foo
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hive -f foo
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echo "Updated shadow database"
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@ -7,13 +7,17 @@ then
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fi
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export TARGET=$1
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export SCRIPT_PATH=$2
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export STATS_EXT=$2
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export SCRIPT_PATH=$3
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export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228 -hiveconf hive.auto.convert.join=false"
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export HADOOP_USER_NAME="oozie"
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echo "Getting file from " $SCRIPT_PATH
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hdfs dfs -copyToLocal $SCRIPT_PATH
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echo "Creating indicators"
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impala-shell -q "invalidate metadata"
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impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/^\(.*\)/compute stats ${TARGET}.\1;/" | impala-shell -c -f -
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cat step16-createIndicatorsTables.sql | impala-shell -d $TARGET -f -
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hive $HIVE_OPTS --database ${TARGET} -e "show tables" | grep -v WARN | sed "s/STATS_EXT/${STATS_EXT}/g" |sed "s/^\(.*\)/analyze table ${TARGET}.\1 compute statistics;/" > foo
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hive $HIVE_OPTS -f foo
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hive $HIVE_OPTS --database ${TARGET} -f step16-createIndicatorsTables.sql
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echo "Indicators created"
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@ -0,0 +1,19 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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export SOURCE=$1
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export SHADOW=$2
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export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
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export HADOOP_USER_NAME="oozie"
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echo "Updating shadow database"
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hive -e "drop database if exists ${SHADOW} cascade"
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hive -e "create database if not exists ${SHADOW}"
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hive $HIVE_OPTS --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" > foo
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hive -f foo
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echo "Updated shadow database"
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@ -11,15 +11,15 @@ export TARGET=$2
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export SHADOW=$3
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export SCRIPT_PATH=$4
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echo "Getting file from " $4
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hdfs dfs -copyToLocal $4
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export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
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export HADOOP_USER_NAME="oozie"
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echo "Getting file from " $SCRIPT_PATH
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hdfs dfs -copyToLocal $SCRIPT_PATH
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|
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echo "Creating monitor database"
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cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 | impala-shell -f -
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echo "Impala shell finished"
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#cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 > foo
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cat step20-createMonitorDB.sql | sed "s/TARGET/${TARGET}/g" | sed "s/SOURCE/${SOURCE}/g1" > foo
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hive $HIVE_OPTS -f foo
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echo "Hive shell finished"
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echo "Updating shadow monitor database"
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impala-shell -q "create database if not exists ${SHADOW}"
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impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f -
|
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impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" | impala-shell -f -
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echo "Shadow db ready!"
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@ -7,15 +7,13 @@ then
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fi
|
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export SOURCE=$1
|
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export TARGET=$2
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export SHADOW=$3
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export SHADOW=$2
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export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
|
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export HADOOP_USER_NAME="oozie"
|
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|
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impala-shell -q "invalidate metadata;"
|
||||
impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/compute stats ${TARGET}.\1;/" | impala-shell -f -
|
||||
echo "Impala shell finished"
|
||||
|
||||
echo "Updating shadow observatory database"
|
||||
impala-shell -q "create database if not exists ${SHADOW}"
|
||||
impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f -
|
||||
impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" | impala-shell -f -
|
||||
echo "Shadow db ready!"
|
||||
echo "Updating shadow database"
|
||||
hive -e "drop database if exists ${SHADOW} cascade"
|
||||
hive -e "create database if not exists ${SHADOW}"
|
||||
hive $HIVE_OPTS --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" > foo
|
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hive -f foo
|
||||
echo "Updated shadow database"
|
||||
|
|
@ -10,7 +10,11 @@ export SOURCE=$1
|
|||
export TARGET=$2
|
||||
export SHADOW=$3
|
||||
|
||||
export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
|
||||
export HADOOP_USER_NAME="oozie"
|
||||
|
||||
echo "Creating observatory database"
|
||||
impala-shell -q "drop database if exists ${TARGET} cascade"
|
||||
impala-shell -q "create database if not exists ${TARGET}"
|
||||
impala-shell -d ${SOURCE} -q "show tables" --delimited | grep -iv roar | sed "s/\(.*\)/create view ${TARGET}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -f -
|
||||
hive -e "drop database if exists ${TARGET} cascade"
|
||||
hive -e "create database if not exists ${TARGET}"
|
||||
hive $HIVE_OPTS --database ${SOURCE} -e "show tables" | grep -v WARN | grep -iv roar | sed "s/\(.*\)/create view ${TARGET}.\1 as select * from ${SOURCE}.\1;/" > foo
|
||||
hive -f foo
|
||||
|
|
|
|||
|
|
@ -44,7 +44,7 @@ from (
|
|||
from ${openaire_db_name}.result r lateral view explode(r.instance) instances as inst lateral view explode(inst.pid) pids as p) r
|
||||
join ${stats_db_name}.result res on res.id=r.id;
|
||||
|
||||
create table ${stats_db_name}.result_apc as
|
||||
create table ${stats_db_name}.result_apc STORED AS PARQUET as
|
||||
select r.id, r.amount, r.currency
|
||||
from (
|
||||
select substr(r.id, 4) as id, cast(inst.processingchargeamount.value as float) as amount, inst.processingchargecurrency.value as currency
|
||||
|
|
@ -52,4 +52,4 @@ from (
|
|||
join ${stats_db_name}.result res on res.id=r.id
|
||||
where r.amount is not null;
|
||||
|
||||
create view ${stats_db_name}.issn_gold_oa_dataset as select * from stats_ext.issn_gold_oa_dataset;
|
||||
create view ${stats_db_name}.issn_gold_oa_dataset as select * from ${external_stats_db_name}.issn_gold_oa_dataset;
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -61,86 +61,91 @@ create table TARGET.result stored as parquet as
|
|||
'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje
|
||||
'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan
|
||||
'openorgs____::b8b8ca674452579f3f593d9f5e557483', -- University College Cork
|
||||
'openorgs____::38d7097854736583dde879d12dacafca', -- Brown University
|
||||
'openorgs____::38d7097854736583dde879d12dacafca' -- Brown University
|
||||
'openorgs____::57784c9e047e826fefdb1ef816120d92', --Arts et Métiers ParisTech
|
||||
'openorgs____::2530baca8a15936ba2e3297f2bce2e7e' -- University of Cape Town
|
||||
))) foo;
|
||||
compute stats TARGET.result;
|
||||
'openorgs____::2530baca8a15936ba2e3297f2bce2e7e', -- University of Cape Town
|
||||
'openorgs____::d11f981828c485cd23d93f7f24f24db1', -- Technological University Dublin
|
||||
'openorgs____::5e6bf8962665cdd040341171e5c631d8', -- Delft University of Technology
|
||||
'openorgs____::846cb428d3f52a445f7275561a7beb5d' -- University of Manitoba
|
||||
) )) foo;
|
||||
|
||||
ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_citations;
|
||||
ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_references_oc;
|
||||
ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_citations_oc;
|
||||
ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_classifications;
|
||||
ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_apc;
|
||||
ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_concepts;
|
||||
ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_datasources;
|
||||
ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_fundercount;
|
||||
ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_gold;
|
||||
ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_greenoa;
|
||||
ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_languages;
|
||||
ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_licenses;
|
||||
ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized;
|
||||
ANALYZE TABLE TARGET.licenses_normalized COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_oids;
|
||||
ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_organization;
|
||||
ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_peerreviewed;
|
||||
ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_pids;
|
||||
ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_projectcount;
|
||||
ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_projects;
|
||||
ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_refereed;
|
||||
ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_sources;
|
||||
ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_topics;
|
||||
ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS;
|
||||
|
||||
create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_fos;
|
||||
ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS;
|
||||
|
||||
create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
|
||||
create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
|
||||
create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
|
||||
drop view TARGET.foo1;
|
||||
drop view TARGET.foo2;
|
||||
compute stats TARGET.result_result;
|
||||
ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS;
|
||||
|
||||
-- datasources
|
||||
create view if not exists TARGET.datasource as select * from SOURCE.datasource;
|
||||
|
|
@ -149,7 +154,7 @@ create view if not exists TARGET.datasource_organizations as select * from SOURC
|
|||
create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
|
||||
|
||||
create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources;
|
||||
compute stats TARGET.datasource_results;
|
||||
ANALYZE TABLE TARGET.datasource_results COMPUTE STATISTICS;
|
||||
|
||||
-- organizations
|
||||
create view if not exists TARGET.organization as select * from SOURCE.organization;
|
||||
|
|
@ -164,30 +169,31 @@ create view if not exists TARGET.project_oids as select * from SOURCE.project_oi
|
|||
create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
|
||||
create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
|
||||
create view if not exists TARGET.project_classification as select * from SOURCE.project_classification;
|
||||
create view if not exists TARGET.project_organization_contribution as select * from SOURCE.project_organization_contribution;
|
||||
|
||||
create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects;
|
||||
compute stats TARGET.project_results;
|
||||
ANALYZE TABLE TARGET.project_results COMPUTE STATISTICS;
|
||||
|
||||
-- indicators
|
||||
-- Sprint 1 ----
|
||||
create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_green_oa;
|
||||
ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_grey_lit;
|
||||
ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_doi_from_crossref;
|
||||
ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS;
|
||||
-- Sprint 2 ----
|
||||
create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_result_has_cc_licence;
|
||||
ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS;
|
||||
create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_result_has_cc_licence_url;
|
||||
ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_has_abstract;
|
||||
ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS;
|
||||
create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_result_with_orcid;
|
||||
ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS;
|
||||
---- Sprint 3 ----
|
||||
create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_funded_result_with_fundref;
|
||||
ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS;
|
||||
create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab;
|
||||
create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab;
|
||||
create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
|
||||
|
|
@ -196,30 +202,30 @@ create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funde
|
|||
create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab;
|
||||
---- Sprint 4 ----
|
||||
create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_diamond;
|
||||
ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_in_transformative;
|
||||
ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_closed_other_open;
|
||||
ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS;
|
||||
---- Sprint 5 ----
|
||||
create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_result_no_of_copies;
|
||||
ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS;
|
||||
---- Sprint 6 ----
|
||||
create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_hybrid_oa_with_cc;
|
||||
ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
compute stats TARGET.indi_pub_downloads;
|
||||
ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
compute stats TARGET.indi_pub_downloads_datasource;
|
||||
ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
compute stats TARGET.indi_pub_downloads_year;
|
||||
ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
compute stats TARGET.indi_pub_downloads_datasource_year;
|
||||
ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
|
||||
---- Sprint 7 ----
|
||||
create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_gold_oa;
|
||||
ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_pub_hybrid;
|
||||
ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS;
|
||||
create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness;
|
||||
create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr;
|
||||
create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year;
|
||||
|
|
@ -230,11 +236,8 @@ create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
|
|||
create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
|
||||
create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year;
|
||||
create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS;
|
||||
create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS;
|
||||
create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
--create table TARGET.indi_datasets_gold_oa stored as parquet as select * from SOURCE.indi_datasets_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
--compute stats TARGET.indi_datasets_gold_oa;
|
||||
--create table TARGET.indi_software_gold_oa stored as parquet as select * from SOURCE.indi_software_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
--compute stats TARGET.indi_software_gold_oa;
|
||||
|
||||
ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS;
|
||||
|
|
|
|||
|
|
@ -8,6 +8,8 @@ from ${stats_db_name}.result r
|
|||
group by rl.id
|
||||
) rln on rln.id=r.id;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_cc_licence COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -37,6 +39,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_year stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -66,6 +70,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_year COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_year_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -95,6 +101,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_year_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_datasource stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -126,6 +134,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_datasource_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -157,6 +167,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_organization stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -186,6 +198,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_organization_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -215,6 +229,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_funder stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -246,6 +262,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_affiliated_funder_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -277,6 +295,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -308,6 +328,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_year stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -339,6 +361,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_year COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_year_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -370,6 +394,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_year_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_datasource stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -401,6 +427,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_datasource_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -432,6 +460,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_organization stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -463,6 +493,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_organization COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_organization_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -494,6 +526,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_organization_country COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_funder stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -527,6 +561,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
|
|||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_funder COMPUTE STATISTICS;
|
||||
|
||||
create table ${observatory_db_name}.result_deposited_funder_country stored as parquet as
|
||||
select
|
||||
count(distinct r.id) as total,
|
||||
|
|
@ -559,3 +595,5 @@ from ${stats_db_name}.result r
|
|||
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
|
||||
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
|
||||
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
|
||||
|
||||
ANALYZE TABLE ${observatory_db_name}.result_deposited_funder_country COMPUTE STATISTICS;
|
||||
|
|
@ -85,3 +85,11 @@ select distinct xpath_string(fund, '//funder/id') as id,
|
|||
xpath_string(fund, '//funder/name') as name,
|
||||
xpath_string(fund, '//funder/shortname') as shortname
|
||||
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.project_organization_contribution STORED AS PARQUET AS
|
||||
SELECT distinct substr(r.source, 4) AS project, substr(r.target, 4) AS organization,
|
||||
properties[0].value contribution, properties[1].value currency
|
||||
from ${openaire_db_name}.relation r
|
||||
LATERAL VIEW explode (r.properties) properties
|
||||
where properties[0].key='contribution' and r.reltype = 'projectOrganization' and r.source like '40|%'
|
||||
and properties[0].value>0.0 and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
|
||||
|
|
@ -48,12 +48,10 @@ WHERE d1.datainfo.deletedbyinference = FALSE and d1.datainfo.invisible=false;
|
|||
|
||||
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
|
||||
-- Creating a temporary dual table that will be removed after the following insert
|
||||
CREATE TABLE ${stats_db_name}.dual
|
||||
(
|
||||
dummy CHAR(1)
|
||||
);
|
||||
INSERT INTO ${stats_db_name}.dual
|
||||
VALUES ('X');
|
||||
CREATE TABLE ${stats_db_name}.dual ( dummy CHAR(1));
|
||||
|
||||
INSERT INTO ${stats_db_name}.dual VALUES ('X');
|
||||
|
||||
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`,
|
||||
`piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`, `issn_printed`, `issn_online`)
|
||||
SELECT 'other',
|
||||
|
|
@ -73,12 +71,8 @@ FROM ${stats_db_name}.dual
|
|||
WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name = 'Unknown Repository');
|
||||
DROP TABLE ${stats_db_name}.dual;
|
||||
|
||||
UPDATE ${stats_db_name}.datasource_tmp
|
||||
SET name='Other'
|
||||
WHERE name = 'Unknown Repository';
|
||||
UPDATE ${stats_db_name}.datasource_tmp
|
||||
SET yearofvalidation=null
|
||||
WHERE yearofvalidation = '-1';
|
||||
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name = 'Unknown Repository';
|
||||
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation = '-1';
|
||||
|
||||
CREATE TABLE ${stats_db_name}.datasource_languages STORED AS PARQUET AS
|
||||
SELECT substr(d.id, 4) AS id, langs.languages AS language
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
<workflow-app name="Graph Stats" xmlns="uri:oozie:workflow:0.5">
|
||||
<workflow-app name="Graph Stats Hive" xmlns="uri:oozie:workflow:0.5">
|
||||
<parameters>
|
||||
<property>
|
||||
<name>stats_db_name</name>
|
||||
|
|
@ -10,7 +10,6 @@
|
|||
</property>
|
||||
<property>
|
||||
<name>external_stats_db_name</name>
|
||||
<value>stats_ext</value>
|
||||
<description>the external stats that should be added since they are not included in the graph database</description>
|
||||
</property>
|
||||
<property>
|
||||
|
|
@ -53,6 +52,10 @@
|
|||
<name>context_api_url</name>
|
||||
<description>the base url of the context api (https://services.openaire.eu/openaire)</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>hadoop_user_name</name>
|
||||
<description>user name of the wf owner</description>
|
||||
</property>
|
||||
</parameters>
|
||||
|
||||
<global>
|
||||
|
|
@ -67,11 +70,14 @@
|
|||
<name>hive.txn.timeout</name>
|
||||
<value>${hive_timeout}</value>
|
||||
</property>
|
||||
<property>
|
||||
<name>mapred.job.queue.name</name>
|
||||
<value>analytics</value>
|
||||
</property>
|
||||
</configuration>
|
||||
</global>
|
||||
|
||||
<start to="resume_from"/>
|
||||
|
||||
<decision name="resume_from">
|
||||
<switch>
|
||||
<case to="Step1">${wf:conf('resumeFrom') eq 'Step1'}</case>
|
||||
|
|
@ -99,12 +105,13 @@
|
|||
<case to="step21-createObservatoryDB-pre">${wf:conf('resumeFrom') eq 'step21-createObservatoryDB-pre'}</case>
|
||||
<case to="step21-createObservatoryDB">${wf:conf('resumeFrom') eq 'step21-createObservatoryDB'}</case>
|
||||
<case to="step21-createObservatoryDB-post">${wf:conf('resumeFrom') eq 'step21-createObservatoryDB-post'}</case>
|
||||
<case to="Step22">${wf:conf('resumeFrom') eq 'Step22'}</case>
|
||||
<case to="step22-copyDataToImpalaCluster">${wf:conf('resumeFrom') eq 'step22-copyDataToImpalaCluster'}</case>
|
||||
<case to="step23-finalizeImpalaCluster">${wf:conf('resumeFrom') eq 'step23-finalizeImpalaCluster'}</case>
|
||||
<case to="Step24-updateCache">${wf:conf('resumeFrom') eq 'Step24-updateCache'}</case>
|
||||
<default to="Step1"/>
|
||||
</switch>
|
||||
</decision>
|
||||
|
||||
|
||||
<kill name="Kill">
|
||||
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
|
||||
</kill>
|
||||
|
|
@ -282,6 +289,7 @@
|
|||
<script>scripts/step15_5.sql</script>
|
||||
<param>stats_db_name=${stats_db_name}</param>
|
||||
<param>openaire_db_name=${openaire_db_name}</param>
|
||||
<param>external_stats_db_name=${external_stats_db_name}</param>
|
||||
</hive2>
|
||||
<ok to="Contexts"/>
|
||||
<error to="Kill"/>
|
||||
|
|
@ -306,6 +314,7 @@
|
|||
<name-node>${nameNode}</name-node>
|
||||
<exec>indicators.sh</exec>
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>${external_stats_db_name}</argument>
|
||||
<argument>${wf:appPath()}/scripts/step16-createIndicatorsTables.sql</argument>
|
||||
<file>indicators.sh</file>
|
||||
</shell>
|
||||
|
|
@ -359,6 +368,19 @@
|
|||
<argument>${wf:appPath()}/scripts/step20-createMonitorDB.sql</argument>
|
||||
<file>monitor.sh</file>
|
||||
</shell>
|
||||
<ok to="step20-createMonitorDB-post"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="step20-createMonitorDB-post">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>monitor-post.sh</exec>
|
||||
<argument>${monitor_db_name}</argument>
|
||||
<argument>${monitor_db_shadow_name}</argument>
|
||||
<file>monitor-post.sh</file>
|
||||
</shell>
|
||||
<ok to="step21-createObservatoryDB-pre"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
|
@ -393,16 +415,50 @@
|
|||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>observatory-post.sh</exec>
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>${observatory_db_name}</argument>
|
||||
<argument>${observatory_db_shadow_name}</argument>
|
||||
<file>observatory-post.sh</file>
|
||||
</shell>
|
||||
<ok to="Step22"/>
|
||||
<ok to="step22-copyDataToImpalaCluster"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step22">
|
||||
<action name="step22-copyDataToImpalaCluster">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>copyDataToImpalaCluster.sh</exec>
|
||||
<!-- <env-var>HADOOP_USER_NAME=${wf:user()}</env-var>-->
|
||||
<!-- <argument>${external_stats_db_name}</argument>-->
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>${monitor_db_name}</argument>
|
||||
<argument>${observatory_db_name}</argument>
|
||||
<argument>${external_stats_db_name}</argument>
|
||||
<argument>${hadoop_user_name}</argument>
|
||||
<file>copyDataToImpalaCluster.sh</file>
|
||||
</shell>
|
||||
<ok to="step23-finalizeImpalaCluster"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="step23-finalizeImpalaCluster">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>finalizeImpalaCluster.sh</exec>
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>${stats_db_shadow_name}</argument>
|
||||
<argument>${monitor_db_name}</argument>
|
||||
<argument>${monitor_db_shadow_name}</argument>
|
||||
<argument>${observatory_db_name}</argument>
|
||||
<argument>${observatory_db_shadow_name}</argument>
|
||||
<file>finalizeImpalaCluster.sh</file>
|
||||
</shell>
|
||||
<ok to="Step24-updateCache"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step24-updateCache">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
|
|
|
|||
Loading…
Reference in New Issue