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1199 Commits

Author SHA1 Message Date
Claudio Atzori 4e6f46e8fa filter blocks with one record only 2020-07-15 11:22:20 +02:00
Michele Artini 262c29463e relations with multiple datasources 2020-07-15 09:18:40 +02:00
Claudio Atzori 7d6e269b40 reverted CreateRelatedEntitiesJob_phase1 to its previous state 2020-07-13 22:54:04 +02:00
Claudio Atzori 8e97598eb4 avoid to NPE in case of null instances 2020-07-13 20:46:14 +02:00
Claudio Atzori 06def0c0cb SparkBlockStats allows to repartition the input rdd via the numPartitions workflow parameter 2020-07-13 20:09:06 +02:00
miconis b52c246aed merge done 2020-07-13 19:57:02 +02:00
miconis b8a45041fd minor changes 2020-07-13 19:53:18 +02:00
Claudio Atzori 66f9f6d323 adjusted parameters for the dedup stats workflow 2020-07-13 19:26:46 +02:00
miconis 03ecfa5ebd implementation of the test class for the new block stats spark action 2020-07-13 18:48:23 +02:00
miconis 10e08ccf45 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-13 18:22:45 +02:00
miconis 9258e4f095 implementation of a new workflow to compute statistics on the blocks 2020-07-13 18:22:34 +02:00
Claudio Atzori c6f6fb0f28 code formatting 2020-07-13 16:46:13 +02:00
Claudio Atzori 8d2102d7d2 Merge branch 'deduptesting' 2020-07-13 16:32:43 +02:00
Claudio Atzori 344a90c2e6 updated assertions in propagateRelationTest 2020-07-13 16:32:04 +02:00
Claudio Atzori 1143f426aa WIP SparkCreateMergeRels distinct relations 2020-07-13 16:13:36 +02:00
Claudio Atzori 8c67938ad0 configurable number of partitions used in the SparkCreateSimRels phase 2020-07-13 16:07:07 +02:00
Claudio Atzori c73168b18e Merge branch 'deduptesting' of https://code-repo.d4science.org/D-Net/dnet-hadoop into deduptesting 2020-07-13 15:54:58 +02:00
Claudio Atzori c8284bab06 WIP SparkCreateMergeRels distinct relations 2020-07-13 15:54:51 +02:00
Sandro La Bruzzo 1d133b7fe6 update test 2020-07-13 15:52:41 +02:00
Michele Artini 3635d05061 poms 2020-07-13 15:52:23 +02:00
Claudio Atzori 7dd91edf43 parsing of optional parameter 2020-07-13 15:40:41 +02:00
Claudio Atzori 4c101a9d66 WIP SparkCreateMergeRels distinct relations 2020-07-13 15:31:38 +02:00
Claudio Atzori 8a612d861a WIP SparkCreateMergeRels distinct relations 2020-07-13 15:30:57 +02:00
Sandro La Bruzzo 9ef2385022 implemented test for cut of connected component 2020-07-13 15:28:17 +02:00
Sandro La Bruzzo d561b2dd21 implemented cut of connected component 2020-07-13 14:18:42 +02:00
Claudio Atzori e2093e42db Merge branch 'master' into deduptesting 2020-07-13 10:57:49 +02:00
Michele Artini 2c4ed9a043 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-13 10:55:39 +02:00
Michele Artini ccbe5c5658 fixed import of eu.dnetlib.dhp:dnet-openaire-broker-common 2020-07-13 10:55:27 +02:00
Claudio Atzori 7a3fd9f54c dedup relation aggregator moved into dedicated class 2020-07-13 10:11:36 +02:00
Alessia Bardi 7e96105947 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-12 19:29:12 +02:00
Alessia Bardi b7a39731a6 assert, not print 2020-07-12 19:28:56 +02:00
Claudio Atzori 770adc26e9 WIP aggregator to make relationships unique 2020-07-10 19:35:10 +02:00
Claudio Atzori ecf119f37a Merge branch 'master' into deduptesting 2020-07-10 19:04:16 +02:00
Claudio Atzori 31071e363f Merge branch 'provision_indexing' 2020-07-10 19:03:57 +02:00
Claudio Atzori 06c1913062 added different limits for grouping by source and by target, incremented spark.sql.shuffle.partitions for the join operations 2020-07-10 19:03:33 +02:00
Claudio Atzori cc77446dc4 added dbSchema parameter to the raw_db workflow 2020-07-10 19:01:50 +02:00
Claudio Atzori 4c3836f62e materialize the related entities before joining them 2020-07-10 19:00:44 +02:00
Michele Artini e1ae964bc4 stats 2020-07-10 16:12:08 +02:00
Claudio Atzori 752d28f8eb make the relations produced by the dedup SparkPropagateRelation jon unique 2020-07-10 15:09:50 +02:00
Sandro La Bruzzo c01efed79b Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-10 14:44:57 +02:00
Sandro La Bruzzo a7d3977481 added generation of EBI Dataset 2020-07-10 14:44:50 +02:00
Claudio Atzori b21866a2da allow to set different to relations cut points by source and by target; adjusted weight assigned to relationship types 2020-07-10 13:59:48 +02:00
Claudio Atzori ff4d6214f1 experimenting with pruning of relations 2020-07-10 10:06:41 +02:00
Michele Artini 2d742a84ae DedupConfig as json file 2020-07-09 12:53:46 +02:00
Michele Artini a44b9b36b9 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-09 11:02:31 +02:00
Michele Artini 1c6a171633 updated pom 2020-07-09 11:02:09 +02:00
Claudio Atzori 3c728aaa0c trying to overcome OOM errors during duplicate scan phase 2020-07-08 22:39:51 +02:00
Claudio Atzori 18c555cd79 Merge branch 'master' into deduptesting 2020-07-08 22:32:01 +02:00
Claudio Atzori 4365cf41d7 trying to overcome OOM errors during duplicate scan phase 2020-07-08 22:31:46 +02:00
Claudio Atzori 67e1d222b6 bulk cleaning when found null or empty, sets bestaccessrights evaluating the result instances 2020-07-08 17:53:35 +02:00
Alessia Bardi 853e8d7987 test for software merge 2020-07-08 17:03:53 +02:00
Claudio Atzori 610d377d57 first implementation of the BETA & PROD graphs merge procedure 2020-07-08 16:54:26 +02:00
Claudio Atzori e2ea30f89d updated graph construction workflow definition: cleaning wf moved at the bottom to include cleaning of the information produced by the enrichment workflows 2020-07-08 12:16:24 +02:00
Michele Artini dffa0b01a2 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-07 15:37:29 +02:00
Michele Artini efadbdb2bc fixed a bug with duplicated events 2020-07-07 15:37:13 +02:00
Claudio Atzori 8af8e7481a code formatting 2020-07-07 14:23:34 +02:00
Claudio Atzori b383ed42fa pass optional parameter relationFilter to the PrepareRelationJob implementation 2020-07-07 14:21:28 +02:00
Claudio Atzori 911894a987 Merge branch 'deduptesting' 2020-07-07 14:20:43 +02:00
Enrico Ottonello ca37d3427b separate workflow to parse orcid summaries, activities and generate dataset with no doi publications; test 2020-07-03 23:30:31 +02:00
Michele Artini edf6c6c4dc Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-03 11:48:24 +02:00
Michele Artini 04bebb708c some fixes 2020-07-03 11:48:12 +02:00
Enrico Ottonello 1729cc5cf3 publication conversion from json to oaf test 2020-07-02 18:46:20 +02:00
Claudio Atzori c3d67f709a adjusted dedup configuration for result entities: using new wordssuffixprefix clustering function, removed ngrampairs, adjusted queueMaxSize (800) and slidingWindowSize (80) 2020-07-02 17:35:22 +02:00
Claudio Atzori 1d39f7901c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-02 12:45:01 +02:00
Claudio Atzori 0f77cac4b5 fix: deduper must use queueMaxSize instead of groupMaxSize for the block definition 2020-07-02 12:43:51 +02:00
Sandro La Bruzzo 18b9330312 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-02 12:43:19 +02:00
Michele Artini b413db0bff white/blacklists 2020-07-02 12:43:03 +02:00
Claudio Atzori d380b85246 unit test for the preparation of the relations 2020-07-02 12:42:13 +02:00
Claudio Atzori ed1c7e5d75 fixed workflow for the import of the claims alone 2020-07-02 12:40:21 +02:00
Sandro La Bruzzo 07f0723fa7 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-02 12:37:49 +02:00
Sandro La Bruzzo 1d420eedb4 added generation of EBI Dataset 2020-07-02 12:37:43 +02:00
Claudio Atzori e4a29a4513 fixed workflow for the import of the claims alone 2020-07-02 12:36:33 +02:00
Enrico Ottonello 5525f57ec8 converter from orcid work json to oaf 2020-07-01 18:36:14 +02:00
Michele Artini 3bcdfbabe9 list with limits 2020-07-01 08:42:39 +02:00
Michele Artini 59a5421c24 indexing, accumulators, limited lists 2020-06-30 16:17:09 +02:00
Enrico Ottonello b7b6be12a5 fixed enriched works generation 2020-06-29 18:03:16 +02:00
Michele Artini 6f13673464 accumulators 2020-06-29 16:33:32 +02:00
Sandro La Bruzzo dab783b173 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-29 09:05:00 +02:00
Michele Artini a6ea432435 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-29 08:44:20 +02:00
Michele Artini 35ae381d28 all events matchers 2020-06-29 08:43:56 +02:00
Claudio Atzori 7817338e05 added test to verify the relation pre-processing 2020-06-26 17:58:33 +02:00
Enrico Ottonello b2213b6435 merged with dnet version 2020-06-26 17:27:34 +02:00
Enrico Ottonello c5e149c46e Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-06-26 16:15:38 +02:00
Claudio Atzori 8d59fdf34e WIP: dataset based PrepareRelationsJob 2020-06-26 14:32:58 +02:00
Michele Artini 2393d9da2f limits 2020-06-26 11:20:45 +02:00
Enrico Ottonello d6498278ed added workflow to generate seq(orcidId,work) and seq(orcidId,enrichedWork) 2020-06-25 18:43:29 +02:00
Sandro La Bruzzo 96ce124b59 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-25 17:00:43 +02:00
Michele Artini 408165a756 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-25 15:53:35 +02:00
Michele Artini e8fb305f18 compilation of event map 2020-06-25 15:53:20 +02:00
Michele Artini 4eb3e109d7 compilation of event map 2020-06-25 15:45:50 +02:00
Claudio Atzori d839e88783 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-25 14:06:30 +02:00
Claudio Atzori 6f5771c1c9 sets author.rank when null 2020-06-25 14:06:21 +02:00
Michele Artini e28033c6d8 some fixes 2020-06-25 13:01:09 +02:00
Claudio Atzori 216975c4ec restored complete provision workflow 2020-06-25 12:55:52 +02:00
Claudio Atzori 2d77d3a388 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-25 12:54:30 +02:00
Claudio Atzori 93f627ea51 code formatting 2020-06-25 12:54:21 +02:00
Miriam Baglioni 05a99cfb61 change the position of value and description elements in the workflow definition 2020-06-25 12:36:08 +02:00
Claudio Atzori 7df2712824 Merge branch 'provision_indexing' 2020-06-25 12:22:41 +02:00
Claudio Atzori e62333192c WIP: prepare relation job 2020-06-25 12:22:18 +02:00
Claudio Atzori 6933ec11fb WIP: prepare relation job 2020-06-25 11:04:12 +02:00