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test to send is from hdfs

This commit is contained in:
Miriam Baglioni 2020-08-05 14:24:43 +02:00
parent 14eda4f46e
commit adf0ca5aa7
1 changed files with 55 additions and 1 deletions
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56
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java
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@ -17,7 +17,7 @@ public class ZenodoUploadTest {
private static String workingDir;
private final String URL_STRING = "https://sandbox.zenodo.org/api/deposit/depositions";
private final String ACCESS_TOKEN = "";
private final String ACCESS_TOKEN = "5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe";
@BeforeAll
public static void beforeAll() throws IOException {
@ -83,4 +83,58 @@ public class ZenodoUploadTest {
}
@Test
public void sendAsInputStream() throws IOException {
CommunityMap communityMap = new CommunityMap();
communityMap.put("ni", "Neuroinformatics");
communityMap.put("dh-ch", "Digital Humanities and Cultural Heritage");
LocalFileSystem fs = FileSystem.getLocal(new Configuration());
fs
.copyFromLocalFile(
false, new Path(getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni")
.getPath()),
new Path(workingDir + "/zenodo/ni/ni"));
fs
.copyFromLocalFile(
false, new Path(getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/dh-ch")
.getPath()),
new Path(workingDir + "/zenodo/dh-ch/dh-ch"));
APIClient client = new APIClient(URL_STRING,
ACCESS_TOKEN);
client.connect();
// the second boolean parameter here sets the recursion to true
RemoteIterator<LocatedFileStatus> fileStatusListIterator = fs
.listFiles(
new Path(workingDir + "/zenodo"), true);
while (fileStatusListIterator.hasNext()) {
LocatedFileStatus fileStatus = fileStatusListIterator.next();
String p_string = fileStatus.getPath().toString();
int index = p_string.lastIndexOf("/");
String community = p_string.substring(0, index);
community = community.substring(community.lastIndexOf("/") + 1);
String community_name = communityMap.get(community).replace(" ", "_");
//fs.copyToLocalFile(fileStatus.getPath(), new Path("/tmp/" + community_name));
System.out.println(community);
//File f = new File("/tmp/" + community_name);
FSDataInputStream inputStream = fs.open(fileStatus.getPath());
System.out.println(client.uploadIS(inputStream, community_name));
}
String metadata = "{\"metadata\":{\"access_right\":\"open\",\"communities\":[{\"identifier\":\"openaire-research-graph\"}],\"creators\":[{\"affiliation\":\"CNR - ISTI\",\"name\":\"Manghi, Paolo\",\"orcid\":\"0000-0001-7291-3210\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Atzori, Claudio\",\"orcid\":\"0000-0001-9613-6639\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Bardi, Alessia\",\"orcid\":\"0000-0002-1112-1292\"},{\"affiliation\":\"ISTI - CNR\",\"name\":\"Baglioni, Miriam\",\"orcid\":\"0000-0002-2273-9004\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Shirrwagen, Jochen\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Dimitropoulos, Harry\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"La Bruzzo, Sandro\",\"orcid\":\"0000-0003-2855-1245\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Foufoulas, Ioannis\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Löhden, Aenne\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Bäcker, Amelie\",\"orcid\":\"0000-0001-6015-2063\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Mannocci, Andrea\",\"orcid\":\"0000-0002-5193-7851\"},{\"affiliation\":\"University of Warsaw\",\"name\":\"Horst, Marek\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Czerniak, Andreas\",\"orcid\":\"0000-0003-3883-4169\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kiatropoulou, Katerina\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kokogiannaki, Argiro\",\"orcid\":\"0000-0002-3880-0244\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"De Bonis, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Artini, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Ottonello, Enrico\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Lempesis, Antonis\"},{\"affiliation\":\"CERN\",\"name\":\"Ioannidis, Alexandros\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Summan, Friedrich\"}],\"description\":\"\\u003cp\\u003eThis dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE\\u003c/p\\u003e. \\u003cp\\u003eEach dataset is a zip containing a file with one json per line. Each json is compliant to the schema available at XXXX\\u003c/p\\u003e Note that the file that is offered is not a typical json file: each line contains a separate, self-contained json object. For more information please see http://jsonlines.org\",\"grants\":[{\"id\":\"777541\"},{\"id\":\"824091\"},{\"id\":\"824323\"}],\"keywords\":[\"Open Science\",\"Scholarly Communication\",\"Information Science\"],\"language\":\"eng\",\"license\":\"CC-BY-4.0\",\"title\":\"OpenAIRE Research Graph: Dumps for research communities and initiatives.\",\"upload_type\":\"dataset\",\"version\":\"1.0\"}}";
System.out.println(client.sendMretadata(metadata));
System.out.println(client.publish());
}
}