forked from D-Net/dnet-hadoop
reindent
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@ -70,8 +70,10 @@ public abstract class AbstractMdRecordToOafMapper {
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protected static final String DATACITE_SCHEMA_KERNEL_4_SLASH = "http://datacite.org/schema/kernel-4/";
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protected static final String DATACITE_SCHEMA_KERNEL_3 = "http://datacite.org/schema/kernel-3";
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protected static final String DATACITE_SCHEMA_KERNEL_3_SLASH = "http://datacite.org/schema/kernel-3/";
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protected static final Qualifier ORCID_PID_TYPE = qualifier("ORCID", "Open Researcher and Contributor ID", DNET_PID_TYPES, DNET_PID_TYPES);
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protected static final Qualifier MAG_PID_TYPE = qualifier("MAGIdentifier", "Microsoft Academic Graph Identifier", DNET_PID_TYPES, DNET_PID_TYPES);
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protected static final Qualifier ORCID_PID_TYPE = qualifier(
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"ORCID", "Open Researcher and Contributor ID", DNET_PID_TYPES, DNET_PID_TYPES);
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protected static final Qualifier MAG_PID_TYPE = qualifier(
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"MAGIdentifier", "Microsoft Academic Graph Identifier", DNET_PID_TYPES, DNET_PID_TYPES);
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protected static final Map<String, String> nsContext = new HashMap<>();
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@ -85,7 +87,8 @@ public abstract class AbstractMdRecordToOafMapper {
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nsContext.put("datacite", DATACITE_SCHEMA_KERNEL_3);
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}
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protected static final Qualifier MAIN_TITLE_QUALIFIER = qualifier("main title", "main title", "dnet:dataCite_title", "dnet:dataCite_title");
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protected static final Qualifier MAIN_TITLE_QUALIFIER = qualifier(
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"main title", "main title", "dnet:dataCite_title", "dnet:dataCite_title");
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protected AbstractMdRecordToOafMapper(final VocabularyGroup vocs, final boolean invisible) {
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this.vocs = vocs;
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@ -97,20 +100,26 @@ public abstract class AbstractMdRecordToOafMapper {
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DocumentFactory.getInstance().setXPathNamespaceURIs(nsContext);
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final Document doc = DocumentHelper
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.parseText(xml
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.replaceAll(DATACITE_SCHEMA_KERNEL_4, DATACITE_SCHEMA_KERNEL_3)
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.replaceAll(DATACITE_SCHEMA_KERNEL_4_SLASH, DATACITE_SCHEMA_KERNEL_3)
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.replaceAll(DATACITE_SCHEMA_KERNEL_3_SLASH, DATACITE_SCHEMA_KERNEL_3));
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.parseText(
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xml
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.replaceAll(DATACITE_SCHEMA_KERNEL_4, DATACITE_SCHEMA_KERNEL_3)
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.replaceAll(DATACITE_SCHEMA_KERNEL_4_SLASH, DATACITE_SCHEMA_KERNEL_3)
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.replaceAll(DATACITE_SCHEMA_KERNEL_3_SLASH, DATACITE_SCHEMA_KERNEL_3));
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final KeyValue collectedFrom = getProvenanceDatasource(doc, "//oaf:collectedFrom/@id", "//oaf:collectedFrom/@name");
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final KeyValue collectedFrom = getProvenanceDatasource(
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doc, "//oaf:collectedFrom/@id", "//oaf:collectedFrom/@name");
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if (collectedFrom == null) { return null; }
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if (collectedFrom == null) {
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return null;
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}
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final KeyValue hostedBy = StringUtils.isBlank(doc.valueOf("//oaf:hostedBy/@id"))
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? collectedFrom
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: getProvenanceDatasource(doc, "//oaf:hostedBy/@id", "//oaf:hostedBy/@name");
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if (hostedBy == null) { return null; }
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if (hostedBy == null) {
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return null;
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}
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final DataInfo info = prepareDataInfo(doc, invisible);
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final long lastUpdateTimestamp = new Date().getTime();
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@ -152,7 +161,9 @@ public abstract class AbstractMdRecordToOafMapper {
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final String dsId = doc.valueOf(xpathId);
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final String dsName = doc.valueOf(xpathName);
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if (StringUtils.isBlank(dsId) | StringUtils.isBlank(dsName)) { return null; }
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if (StringUtils.isBlank(dsId) | StringUtils.isBlank(dsName)) {
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return null;
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}
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return keyValue(createOpenaireId(10, dsId, true), dsName);
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}
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@ -168,47 +179,47 @@ public abstract class AbstractMdRecordToOafMapper {
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final List<Oaf> oafs = new ArrayList<>();
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switch (type.toLowerCase()) {
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case "publication":
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final Publication p = new Publication();
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populateResultFields(p, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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p.setResulttype(PUBLICATION_DEFAULT_RESULTTYPE);
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p.setJournal(prepareJournal(doc, info));
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oafs.add(p);
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break;
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case "dataset":
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final Dataset d = new Dataset();
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populateResultFields(d, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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d.setResulttype(DATASET_DEFAULT_RESULTTYPE);
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d.setStoragedate(prepareDatasetStorageDate(doc, info));
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d.setDevice(prepareDatasetDevice(doc, info));
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d.setSize(prepareDatasetSize(doc, info));
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d.setVersion(prepareDatasetVersion(doc, info));
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d.setLastmetadataupdate(prepareDatasetLastMetadataUpdate(doc, info));
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d.setMetadataversionnumber(prepareDatasetMetadataVersionNumber(doc, info));
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d.setGeolocation(prepareDatasetGeoLocations(doc, info));
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oafs.add(d);
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break;
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case "software":
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final Software s = new Software();
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populateResultFields(s, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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s.setResulttype(SOFTWARE_DEFAULT_RESULTTYPE);
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s.setDocumentationUrl(prepareSoftwareDocumentationUrls(doc, info));
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s.setLicense(prepareSoftwareLicenses(doc, info));
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s.setCodeRepositoryUrl(prepareSoftwareCodeRepositoryUrl(doc, info));
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s.setProgrammingLanguage(prepareSoftwareProgrammingLanguage(doc, info));
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oafs.add(s);
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break;
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case "":
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case "otherresearchproducts":
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default:
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final OtherResearchProduct o = new OtherResearchProduct();
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populateResultFields(o, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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o.setResulttype(ORP_DEFAULT_RESULTTYPE);
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o.setContactperson(prepareOtherResearchProductContactPersons(doc, info));
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o.setContactgroup(prepareOtherResearchProductContactGroups(doc, info));
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o.setTool(prepareOtherResearchProductTools(doc, info));
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oafs.add(o);
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break;
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case "publication":
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final Publication p = new Publication();
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populateResultFields(p, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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p.setResulttype(PUBLICATION_DEFAULT_RESULTTYPE);
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p.setJournal(prepareJournal(doc, info));
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oafs.add(p);
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break;
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case "dataset":
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final Dataset d = new Dataset();
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populateResultFields(d, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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d.setResulttype(DATASET_DEFAULT_RESULTTYPE);
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d.setStoragedate(prepareDatasetStorageDate(doc, info));
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d.setDevice(prepareDatasetDevice(doc, info));
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d.setSize(prepareDatasetSize(doc, info));
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d.setVersion(prepareDatasetVersion(doc, info));
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d.setLastmetadataupdate(prepareDatasetLastMetadataUpdate(doc, info));
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d.setMetadataversionnumber(prepareDatasetMetadataVersionNumber(doc, info));
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d.setGeolocation(prepareDatasetGeoLocations(doc, info));
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oafs.add(d);
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break;
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case "software":
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final Software s = new Software();
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populateResultFields(s, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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s.setResulttype(SOFTWARE_DEFAULT_RESULTTYPE);
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s.setDocumentationUrl(prepareSoftwareDocumentationUrls(doc, info));
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s.setLicense(prepareSoftwareLicenses(doc, info));
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s.setCodeRepositoryUrl(prepareSoftwareCodeRepositoryUrl(doc, info));
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s.setProgrammingLanguage(prepareSoftwareProgrammingLanguage(doc, info));
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oafs.add(s);
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break;
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case "":
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case "otherresearchproducts":
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default:
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final OtherResearchProduct o = new OtherResearchProduct();
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populateResultFields(o, doc, instances, collectedFrom, info, lastUpdateTimestamp);
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o.setResulttype(ORP_DEFAULT_RESULTTYPE);
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o.setContactperson(prepareOtherResearchProductContactPersons(doc, info));
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o.setContactgroup(prepareOtherResearchProductContactGroups(doc, info));
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o.setTool(prepareOtherResearchProductTools(doc, info));
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oafs.add(o);
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break;
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}
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if (!oafs.isEmpty()) {
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@ -239,9 +250,15 @@ public abstract class AbstractMdRecordToOafMapper {
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final String projectId = createOpenaireId(40, originalId, true);
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res
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.add(getRelationWithValidationDate(docId, projectId, RESULT_PROJECT, OUTCOME, IS_PRODUCED_BY, collectedFrom, info, lastUpdateTimestamp, validationdDate));
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.add(
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getRelationWithValidationDate(
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docId, projectId, RESULT_PROJECT, OUTCOME, IS_PRODUCED_BY, collectedFrom, info,
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lastUpdateTimestamp, validationdDate));
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res
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.add(getRelationWithValidationDate(projectId, docId, RESULT_PROJECT, OUTCOME, PRODUCES, collectedFrom, info, lastUpdateTimestamp, validationdDate));
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.add(
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getRelationWithValidationDate(
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projectId, docId, RESULT_PROJECT, OUTCOME, PRODUCES, collectedFrom, info,
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lastUpdateTimestamp, validationdDate));
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}
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}
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@ -258,7 +275,8 @@ public abstract class AbstractMdRecordToOafMapper {
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final long lastUpdateTimestamp,
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final String validationDate) {
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final Relation r = getRelation(source, target, relType, subRelType, relClass, collectedFrom, info, lastUpdateTimestamp);
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final Relation r = getRelation(
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source, target, relType, subRelType, relClass, collectedFrom, info, lastUpdateTimestamp);
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r.setValidated(StringUtils.isNotBlank(validationDate));
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r.setValidationDate(StringUtils.isNotBlank(validationDate) ? validationDate : null);
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return r;
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@ -456,7 +474,9 @@ public abstract class AbstractMdRecordToOafMapper {
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final String sp = n.valueOf("@sp");
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final String vol = n.valueOf("@vol");
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final String edition = n.valueOf("@edition");
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if (StringUtils.isNotBlank(name)) { return journal(name, issnPrinted, issnOnline, issnLinking, ep, iss, sp, vol, edition, null, null, info); }
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if (StringUtils.isNotBlank(name)) {
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return journal(name, issnPrinted, issnOnline, issnLinking, ep, iss, sp, vol, edition, null, null, info);
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}
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}
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return null;
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}
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@ -465,7 +485,9 @@ public abstract class AbstractMdRecordToOafMapper {
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final Node n = doc.selectSingleNode("//*[local-name()='provenance']/*[local-name()='originDescription']");
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if (n != null) {
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final String id = n.valueOf("./*[local-name()='identifier']");
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if (StringUtils.isNotBlank(id)) { return id; }
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if (StringUtils.isNotBlank(id)) {
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return id;
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}
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}
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return doc.valueOf("//*[local-name()='header']/*[local-name()='identifier']");
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@ -534,7 +556,10 @@ public abstract class AbstractMdRecordToOafMapper {
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for (final Object o : node.selectNodes(xpath)) {
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final Node n = (Node) o;
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res
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.add(structuredProperty(n.getText(), n.valueOf("@classid"), n.valueOf("@classname"), n.valueOf("@schemeid"), n.valueOf("@schemename"), info));
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.add(
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structuredProperty(
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n.getText(), n.valueOf("@classid"), n.valueOf("@classname"), n.valueOf("@schemeid"),
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n.valueOf("@schemename"), info));
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}
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return res;
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}
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@ -542,7 +567,9 @@ public abstract class AbstractMdRecordToOafMapper {
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protected OAIProvenance prepareOAIprovenance(final Document doc) {
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final Node n = doc.selectSingleNode("//*[local-name()='provenance']/*[local-name()='originDescription']");
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if (n == null) { return null; }
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if (n == null) {
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return null;
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}
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final String identifier = n.valueOf("./*[local-name()='identifier']");
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final String baseURL = n.valueOf("./*[local-name()='baseURL']");
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@ -557,7 +584,9 @@ public abstract class AbstractMdRecordToOafMapper {
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protected DataInfo prepareDataInfo(final Document doc, final boolean invisible) {
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final Node n = doc.selectSingleNode("//oaf:datainfo");
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if (n == null) { return dataInfo(false, null, false, invisible, REPOSITORY_PROVENANCE_ACTIONS, "0.9"); }
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if (n == null) {
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return dataInfo(false, null, false, invisible, REPOSITORY_PROVENANCE_ACTIONS, "0.9");
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}
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final String paClassId = n.valueOf("./oaf:provenanceaction/@classid");
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final String paClassName = n.valueOf("./oaf:provenanceaction/@classname");
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@ -569,7 +598,9 @@ public abstract class AbstractMdRecordToOafMapper {
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final Boolean inferred = Boolean.parseBoolean(n.valueOf("./oaf:inferred"));
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final String trust = n.valueOf("./oaf:trust");
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return dataInfo(deletedbyinference, inferenceprovenance, inferred, invisible, qualifier(paClassId, paClassName, paSchemeId, paSchemeName), trust);
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return dataInfo(
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deletedbyinference, inferenceprovenance, inferred, invisible,
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qualifier(paClassId, paClassName, paSchemeId, paSchemeName), trust);
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}
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protected Field<String> prepareField(final Node node, final String xpath, final DataInfo info) {
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