forked from D-Net/dnet-hadoop
partial implementation of the suggestions from https://support.openaire.eu/issues/8898
This commit is contained in:
parent
8c63e4a864
commit
270df939c4
|
@ -13,11 +13,7 @@ import java.util.stream.Collectors;
|
||||||
import java.util.stream.Stream;
|
import java.util.stream.Stream;
|
||||||
|
|
||||||
import org.apache.commons.lang3.StringUtils;
|
import org.apache.commons.lang3.StringUtils;
|
||||||
import org.apache.spark.api.java.function.MapFunction;
|
|
||||||
import org.apache.spark.sql.Encoders;
|
|
||||||
|
|
||||||
import com.fasterxml.jackson.core.JsonProcessingException;
|
|
||||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
|
||||||
import com.github.sisyphsu.dateparser.DateParserUtils;
|
import com.github.sisyphsu.dateparser.DateParserUtils;
|
||||||
import com.google.common.collect.Lists;
|
import com.google.common.collect.Lists;
|
||||||
import com.google.common.collect.Sets;
|
import com.google.common.collect.Sets;
|
||||||
|
@ -39,6 +35,7 @@ public class GraphCleaningFunctions extends CleaningFunctions {
|
||||||
public static final String TITLE_FILTER_REGEX = String.format("(%s)|\\W|\\d", TITLE_TEST);
|
public static final String TITLE_FILTER_REGEX = String.format("(%s)|\\W|\\d", TITLE_TEST);
|
||||||
|
|
||||||
public static final int TITLE_FILTER_RESIDUAL_LENGTH = 5;
|
public static final int TITLE_FILTER_RESIDUAL_LENGTH = 5;
|
||||||
|
private static final String NAME_CLEANING_REGEX = "[\\r\\n\\t\\s]+";
|
||||||
|
|
||||||
public static <T extends Oaf> T cleanContext(T value, String contextId, String verifyParam) {
|
public static <T extends Oaf> T cleanContext(T value, String contextId, String verifyParam) {
|
||||||
if (ModelSupport.isSubClass(value, Result.class)) {
|
if (ModelSupport.isSubClass(value, Result.class)) {
|
||||||
|
@ -247,7 +244,8 @@ public class GraphCleaningFunctions extends CleaningFunctions {
|
||||||
if (value instanceof Datasource) {
|
if (value instanceof Datasource) {
|
||||||
// nothing to evaluate here
|
// nothing to evaluate here
|
||||||
} else if (value instanceof Project) {
|
} else if (value instanceof Project) {
|
||||||
// nothing to evaluate here
|
final Project p = (Project) value;
|
||||||
|
return Objects.isNull(p.getCode()) || StringUtils.isBlank(p.getCode().getValue());
|
||||||
} else if (value instanceof Organization) {
|
} else if (value instanceof Organization) {
|
||||||
// nothing to evaluate here
|
// nothing to evaluate here
|
||||||
} else if (value instanceof Relation) {
|
} else if (value instanceof Relation) {
|
||||||
|
@ -294,6 +292,12 @@ public class GraphCleaningFunctions extends CleaningFunctions {
|
||||||
} else if (value instanceof Result) {
|
} else if (value instanceof Result) {
|
||||||
Result r = (Result) value;
|
Result r = (Result) value;
|
||||||
|
|
||||||
|
if (Objects.nonNull(r.getFulltext()) && (ModelConstants.SOFTWARE_RESULTTYPE_CLASSID.equals(r.getResulttype().getClassid()) ||
|
||||||
|
ModelConstants.DATASET_RESULTTYPE_CLASSID.equals(r.getResulttype().getClassid()))) {
|
||||||
|
r.setFulltext(null);
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
if (Objects.nonNull(r.getDateofacceptance())) {
|
if (Objects.nonNull(r.getDateofacceptance())) {
|
||||||
Optional<String> date = cleanDateField(r.getDateofacceptance());
|
Optional<String> date = cleanDateField(r.getDateofacceptance());
|
||||||
if (date.isPresent()) {
|
if (date.isPresent()) {
|
||||||
|
@ -318,8 +322,15 @@ public class GraphCleaningFunctions extends CleaningFunctions {
|
||||||
.filter(sp -> StringUtils.isNotBlank(sp.getValue()))
|
.filter(sp -> StringUtils.isNotBlank(sp.getValue()))
|
||||||
.collect(Collectors.toList()));
|
.collect(Collectors.toList()));
|
||||||
}
|
}
|
||||||
if (Objects.nonNull(r.getPublisher()) && StringUtils.isBlank(r.getPublisher().getValue())) {
|
if (Objects.nonNull(r.getPublisher())) {
|
||||||
|
if (StringUtils.isBlank(r.getPublisher().getValue())) {
|
||||||
r.setPublisher(null);
|
r.setPublisher(null);
|
||||||
|
} else {
|
||||||
|
r.getPublisher().setValue(
|
||||||
|
r.getPublisher().getValue()
|
||||||
|
.replaceAll(NAME_CLEANING_REGEX, " ")
|
||||||
|
);
|
||||||
|
}
|
||||||
}
|
}
|
||||||
if (Objects.isNull(r.getLanguage()) || StringUtils.isBlank(r.getLanguage().getClassid())) {
|
if (Objects.isNull(r.getLanguage()) || StringUtils.isBlank(r.getLanguage().getClassid())) {
|
||||||
r
|
r
|
||||||
|
@ -486,6 +497,11 @@ public class GraphCleaningFunctions extends CleaningFunctions {
|
||||||
i.setDateofacceptance(null);
|
i.setDateofacceptance(null);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
if (StringUtils.isNotBlank(i.getFulltext()) &&
|
||||||
|
(ModelConstants.SOFTWARE_RESULTTYPE_CLASSID.equals(r.getResulttype().getClassid()) ||
|
||||||
|
ModelConstants.DATASET_RESULTTYPE_CLASSID.equals(r.getResulttype().getClassid()))) {
|
||||||
|
i.setFulltext(null);
|
||||||
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
if (Objects.isNull(r.getBestaccessright())
|
if (Objects.isNull(r.getBestaccessright())
|
||||||
|
@ -510,6 +526,7 @@ public class GraphCleaningFunctions extends CleaningFunctions {
|
||||||
.filter(Objects::nonNull)
|
.filter(Objects::nonNull)
|
||||||
.filter(a -> StringUtils.isNotBlank(a.getFullname()))
|
.filter(a -> StringUtils.isNotBlank(a.getFullname()))
|
||||||
.filter(a -> StringUtils.isNotBlank(a.getFullname().replaceAll("[\\W]", "")))
|
.filter(a -> StringUtils.isNotBlank(a.getFullname().replaceAll("[\\W]", "")))
|
||||||
|
.map(GraphCleaningFunctions::cleanupAuthor)
|
||||||
.collect(Collectors.toList()));
|
.collect(Collectors.toList()));
|
||||||
|
|
||||||
boolean nullRank = r
|
boolean nullRank = r
|
||||||
|
@ -604,6 +621,32 @@ public class GraphCleaningFunctions extends CleaningFunctions {
|
||||||
return value;
|
return value;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
private static Author cleanupAuthor(Author author) {
|
||||||
|
if (StringUtils.isNotBlank(author.getFullname())) {
|
||||||
|
author.setFullname(
|
||||||
|
author.getFullname()
|
||||||
|
.replaceAll(NAME_CLEANING_REGEX, " ")
|
||||||
|
.replace("\"", "\\\"")
|
||||||
|
);
|
||||||
|
}
|
||||||
|
if (StringUtils.isNotBlank(author.getName())) {
|
||||||
|
author.setName(
|
||||||
|
author.getName()
|
||||||
|
.replaceAll(NAME_CLEANING_REGEX, " ")
|
||||||
|
.replace("\"", "\\\"")
|
||||||
|
);
|
||||||
|
}
|
||||||
|
if (StringUtils.isNotBlank(author.getSurname())) {
|
||||||
|
author.setSurname(
|
||||||
|
author.getSurname()
|
||||||
|
.replaceAll(NAME_CLEANING_REGEX, " ")
|
||||||
|
.replace("\"", "\\\"")
|
||||||
|
);
|
||||||
|
}
|
||||||
|
|
||||||
|
return author;
|
||||||
|
}
|
||||||
|
|
||||||
private static Optional<String> cleanDateField(Field<String> dateofacceptance) {
|
private static Optional<String> cleanDateField(Field<String> dateofacceptance) {
|
||||||
return Optional
|
return Optional
|
||||||
.ofNullable(dateofacceptance)
|
.ofNullable(dateofacceptance)
|
||||||
|
|
|
@ -251,6 +251,12 @@ public class GraphCleaningFunctionsTest {
|
||||||
pid.getQualifier().getClassname()));
|
pid.getQualifier().getClassname()));
|
||||||
});
|
});
|
||||||
|
|
||||||
|
assertTrue(
|
||||||
|
p_cleaned
|
||||||
|
.getAuthor()
|
||||||
|
.stream()
|
||||||
|
.anyMatch(a -> "Brien, Tom".equals(a.getFullname())));
|
||||||
|
|
||||||
assertNotNull(p_cleaned.getSubject());
|
assertNotNull(p_cleaned.getSubject());
|
||||||
|
|
||||||
List<Subject> fos_subjects = p_cleaned
|
List<Subject> fos_subjects = p_cleaned
|
||||||
|
@ -285,6 +291,31 @@ public class GraphCleaningFunctionsTest {
|
||||||
System.out.println(MAPPER.writeValueAsString(p_cleaned));
|
System.out.println(MAPPER.writeValueAsString(p_cleaned));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void testCleaning_dataset() throws Exception {
|
||||||
|
|
||||||
|
assertNotNull(vocabularies);
|
||||||
|
assertNotNull(mapping);
|
||||||
|
|
||||||
|
String json = IOUtils
|
||||||
|
.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/result_dataset.json"));
|
||||||
|
Dataset p_in = MAPPER.readValue(json, Dataset.class);
|
||||||
|
|
||||||
|
assertTrue(p_in instanceof Result);
|
||||||
|
assertTrue(p_in instanceof Dataset);
|
||||||
|
|
||||||
|
Dataset p_out = OafCleaner.apply(GraphCleaningFunctions.fixVocabularyNames(p_in), mapping);
|
||||||
|
|
||||||
|
assertNotNull(p_out);
|
||||||
|
|
||||||
|
assertNotNull(p_out.getPublisher());
|
||||||
|
assertNotNull(p_out.getPublisher().getValue());
|
||||||
|
|
||||||
|
Dataset p_cleaned = GraphCleaningFunctions.cleanup(p_out, vocabularies);
|
||||||
|
|
||||||
|
assertEquals("Best publisher in the world", p_cleaned.getPublisher().getValue());
|
||||||
|
}
|
||||||
|
|
||||||
private static void verify_keyword(Publication p_cleaned, String subject) {
|
private static void verify_keyword(Publication p_cleaned, String subject) {
|
||||||
Optional<Subject> s1 = p_cleaned
|
Optional<Subject> s1 = p_cleaned
|
||||||
.getSubject()
|
.getSubject()
|
||||||
|
|
|
@ -0,0 +1,28 @@
|
||||||
|
{
|
||||||
|
"resulttype": {
|
||||||
|
"classid": "dataset",
|
||||||
|
"classname": "dataset",
|
||||||
|
"schemeid": "dnet:result_typologies",
|
||||||
|
"schemename": "dnet:result_typologies"
|
||||||
|
},
|
||||||
|
"fulltext": [
|
||||||
|
{
|
||||||
|
"value" : "https://www.researchgate.net"
|
||||||
|
}
|
||||||
|
],
|
||||||
|
"publisher" : {
|
||||||
|
"value" : "Best publisher in the world"
|
||||||
|
},
|
||||||
|
"id": "50|CSC_________::2250a70c903c6ac6e4c01438259e9375",
|
||||||
|
"instance": [
|
||||||
|
{
|
||||||
|
"instancetype": {
|
||||||
|
"classid": "Comment/debate",
|
||||||
|
"classname": "Comment/debate",
|
||||||
|
"schemeid": "dnet:publication_resource",
|
||||||
|
"schemename": "dnet:publication_resource"
|
||||||
|
},
|
||||||
|
"fulltext": "https://www.researchgate.net"
|
||||||
|
}
|
||||||
|
]
|
||||||
|
}
|
Loading…
Reference in New Issue