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refactorign

This commit is contained in:
Miriam Baglioni 2020-07-29 17:43:24 +02:00
parent 074e9ab75e
commit 1433db825d
10 changed files with 1610 additions and 1273 deletions
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15
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
View File

@ -6,7 +6,6 @@ import java.nio.file.Files;
import java.nio.file.Path; import java.nio.file.Path;
import java.util.HashMap; import java.util.HashMap;
import eu.dnetlib.dhp.oa.graph.dump.community.ResultProject;
import org.apache.commons.io.FileUtils; import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaRDD;
@ -24,6 +23,7 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.oa.graph.dump.community.ResultProject;
import eu.dnetlib.dhp.oa.graph.dump.community.SparkPrepareResultProject; import eu.dnetlib.dhp.oa.graph.dump.community.SparkPrepareResultProject;
public class PrepareResultProjectJobTest { public class PrepareResultProjectJobTest {
@ -81,7 +81,6 @@ public class PrepareResultProjectJobTest {
"-sourcePath", sourcePath "-sourcePath", sourcePath
}); });
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<ResultProject> tmp = sc JavaRDD<ResultProject> tmp = sc
@ -126,9 +125,11 @@ public class PrepareResultProjectJobTest {
verificationDataset.createOrReplaceTempView("table"); verificationDataset.createOrReplaceTempView("table");
Dataset<Row> check = spark.sql("Select projList.provenance.provenance " + Dataset<Row> check = spark
"from table " + .sql(
"lateral view explode (projectsList) pl as projList"); "Select projList.provenance.provenance " +
"from table " +
"lateral view explode (projectsList) pl as projList");
Assertions.assertEquals(1, check.filter("provenance = 'sysimport:crosswalk:entityregistry'").count()); Assertions.assertEquals(1, check.filter("provenance = 'sysimport:crosswalk:entityregistry'").count());
@ -229,7 +230,9 @@ public class PrepareResultProjectJobTest {
"project = '40|aka_________::03376222b28a3aebf2730ac514818d04' and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'") "project = '40|aka_________::03376222b28a3aebf2730ac514818d04' and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'")
.count()); .count());
Assertions.assertEquals(3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count()); Assertions
.assertEquals(
3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count());
} }

9
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/SplitForCommunityTest.java
View File

@ -6,9 +6,6 @@ import java.io.IOException;
import java.nio.file.Files; import java.nio.file.Files;
import java.nio.file.Path; import java.nio.file.Path;
import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
import eu.dnetlib.dhp.oa.graph.dump.community.CommunitySplit;
import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
import org.apache.commons.io.FileUtils; import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaRDD;
@ -24,7 +21,10 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
import eu.dnetlib.dhp.oa.graph.dump.community.CommunitySplit;
import eu.dnetlib.dhp.schema.dump.oaf.Result; import eu.dnetlib.dhp.schema.dump.oaf.Result;
import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
public class SplitForCommunityTest { public class SplitForCommunityTest {
@ -87,7 +87,6 @@ public class SplitForCommunityTest {
.getOrCreate(); .getOrCreate();
} }
@AfterAll @AfterAll
public static void afterAll() throws IOException { public static void afterAll() throws IOException {
FileUtils.deleteDirectory(workingDir.toFile()); FileUtils.deleteDirectory(workingDir.toFile());
@ -95,7 +94,7 @@ public class SplitForCommunityTest {
} }
@Test @Test
public void test1() { public void test1() {
final String sourcePath = getClass() final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/splitForCommunity") .getResource("/eu/dnetlib/dhp/oa/graph/dump/splitForCommunity")

2
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java
View File

@ -6,7 +6,6 @@ import java.nio.file.Files;
import java.nio.file.Path; import java.nio.file.Path;
import java.util.HashMap; import java.util.HashMap;
import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
import org.apache.commons.io.FileUtils; import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaRDD;
@ -25,6 +24,7 @@ import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo; import eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo;
import eu.dnetlib.dhp.schema.dump.oaf.Result; import eu.dnetlib.dhp.schema.dump.oaf.Result;
import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
public class UpdateProjectInfoTest { public class UpdateProjectInfoTest {

190
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/CreateEntityTest.java
View File

@ -1,19 +1,7 @@
package eu.dnetlib.dhp.oa.graph.dump.graph; package eu.dnetlib.dhp.oa.graph.dump.graph;
import com.google.gson.Gson; import static org.mockito.Mockito.lenient;
import eu.dnetlib.dhp.schema.dump.oaf.graph.ResearchCommunity;
import eu.dnetlib.dhp.schema.dump.oaf.graph.ResearchInitiative;
import eu.dnetlib.dhp.utils.DHPUtils;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.mockito.Mock;
import org.mockito.junit.jupiter.MockitoExtension;
import java.io.IOException; import java.io.IOException;
import java.util.ArrayList; import java.util.ArrayList;
@ -22,92 +10,120 @@ import java.util.List;
import java.util.Map; import java.util.Map;
import java.util.function.Consumer; import java.util.function.Consumer;
import static org.mockito.Mockito.lenient; import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.mockito.Mock;
import org.mockito.junit.jupiter.MockitoExtension;
import com.google.gson.Gson;
import eu.dnetlib.dhp.schema.dump.oaf.graph.ResearchCommunity;
import eu.dnetlib.dhp.schema.dump.oaf.graph.ResearchInitiative;
import eu.dnetlib.dhp.utils.DHPUtils;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
@ExtendWith(MockitoExtension.class) @ExtendWith(MockitoExtension.class)
public class CreateEntityTest { public class CreateEntityTest {
private static final String XQUERY_ENTITY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') " private static final String XQUERY_ENTITY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
+ +
"where $x//context[./@type='community' or ./@type = 'ri'] and $x//context/param[./@name = 'status']/text() = 'all' return " "where $x//context[./@type='community' or ./@type = 'ri'] and $x//context/param[./@name = 'status']/text() = 'all' return "
+ +
"concat(data($x//context/@id) , '@@', $x//context/param[./@name =\"name\"]/text(), '@@', " + "concat(data($x//context/@id) , '@@', $x//context/param[./@name =\"name\"]/text(), '@@', " +
"$x//context/param[./@name=\"description\"]/text(), '@@', $x//context/param[./@name = \"subject\"]/text(), '@@', " "$x//context/param[./@name=\"description\"]/text(), '@@', $x//context/param[./@name = \"subject\"]/text(), '@@', "
+ +
"$x//context/param[./@name = \"zenodoCommunity\"]/text(), '@@', $x//context/@type)"; "$x//context/param[./@name = \"zenodoCommunity\"]/text(), '@@', $x//context/@type)";
List<String> communityMap = Arrays List<String> communityMap = Arrays
.asList( .asList(
"clarin@@Common Language Resources and Technology Infrastructure@@CLARIN@@@@oac_clarin@@ri", "clarin@@Common Language Resources and Technology Infrastructure@@CLARIN@@@@oac_clarin@@ri",
"ee@@Sustainable Development Solutions Network - Greece@@The UN Sustainable Development Solutions Network (SDSN) has been operating since 2012 under the auspices of the UN Secretary-General. " + "ee@@Sustainable Development Solutions Network - Greece@@The UN Sustainable Development Solutions Network (SDSN) has been operating since 2012 under the auspices of the UN Secretary-General. "
"SDSN mobilizes global scientific and technological expertise to promote practical solutions for sustainable development, including the implementation of the Sustainable Development Goals (SDGs) and the Paris Climate Agreement. The Greek hub of SDSN has been included in the SDSN network in 2017 and is co-hosted by ICRE8: International Center for Research on the Environment and the Economy and the Political Economy of Sustainable Development Lab.@@SDG13 - Climate action,SDG8 - Decent work and economic growth,SDG15 - " + +
"Life on land,SDG2 - Zero hunger,SDG17 - Partnerships for the ´goals,SDG10 - Reduced inequalities,SDG5 - Gender equality,SDG12 - Responsible consumption and production,SDG14 - Life below water,SDG6 - Clean water and sanitation,SDG11 - Sustainable cities and communities,SDG1 - No poverty,SDG3 - Good health and well being,SDG7 - Affordable and clean energy,SDG4 - Quality education,SDG9 - Industry innovation and infrastructure,SDG16 - Peace justice and strong institutions@@oac_sdsn-greece@@community", "SDSN mobilizes global scientific and technological expertise to promote practical solutions for sustainable development, including the implementation of the Sustainable Development Goals (SDGs) and the Paris Climate Agreement. The Greek hub of SDSN has been included in the SDSN network in 2017 and is co-hosted by ICRE8: International Center for Research on the Environment and the Economy and the Political Economy of Sustainable Development Lab.@@SDG13 - Climate action,SDG8 - Decent work and economic growth,SDG15 - "
"dh-ch@@Digital Humanities and Cultural Heritage@@This community gathers research results, data, scientific publications and projects related to the domain of Digital Humanities. This broad definition includes Humanities, Cultural Heritage, History, Archaeology and related fields.@@modern art,monuments,europeana data model,sites,field walking,frescoes,LIDO metadata schema,art history,excavation,Arts and Humanities General,cities,coins,temples,numismatics,lithics,roads,environmental archaeology,digital cultural heritage,archaeological reports,history,CRMba,churches,cultural heritage,archaeological stratigraphy,religious art,buidings,digital humanities,survey,archaeological sites,linguistic studies,bioarchaeology,architectural orders,palaeoanthropology,fine arts,europeana,CIDOC CRM,decorations,classic art,stratigraphy,digital archaeology,intangible cultural heritage,walls,humanities,chapels,CRMtex,Language and Literature,paintings,archaeology,fair data,mosaics,burials,architecture,medieval art,castles,CARARE metadata schema,statues,natural language processing,inscriptions,CRMsci,vaults,contemporary art,Arts and Humanities,CRMarchaeo,pottery,site,architectural,vessels@@oac_dh-ch@@community", +
"fam@@Fisheries and Aquaculture Management@@Conservation of marine resources for sustainable development. The Fisheries and Aquaculture community focus on resources (document, data, codes..) which have been produced in the framework of projects (H2020, FP7, ..) related to the domain of fisheries and aquaculture.@@Stock Assessment,pelagic,Acoustic,Fish farming,Fisheries,Fishermen,maximum sustainable yield,trawler,Fishing vessel,Fisherman,Fishing gear,mackerel,RFMO,Fish Aggregating Device,Bycatch,Fishery,common fisheries policy,Fishing fleet,Aquaculture@@fisheries@@community", "Life on land,SDG2 - Zero hunger,SDG17 - Partnerships for the ´goals,SDG10 - Reduced inequalities,SDG5 - Gender equality,SDG12 - Responsible consumption and production,SDG14 - Life below water,SDG6 - Clean water and sanitation,SDG11 - Sustainable cities and communities,SDG1 - No poverty,SDG3 - Good health and well being,SDG7 - Affordable and clean energy,SDG4 - Quality education,SDG9 - Industry innovation and infrastructure,SDG16 - Peace justice and strong institutions@@oac_sdsn-greece@@community",
"ni@@Neuroinformatics@@The neuroinformatics dashboard gathers research outputs from the 'neuroinformatics' community at large including the fields of: neuroscience, neuroinformatics, brain imaging databases and standards, brain imaging techniques, neuroimaging methods including statistics and machine learning. The dashboard covers a wide range of imaging methods including (but not limited to): MRI, TEP, EEG, MEG, and studies involving human participants as well as animal studies.@@brain mapping,brain imaging,electroencephalography,arterial spin labelling,brain fingerprinting,brain,neuroimaging,Multimodal Brain Image Analysis,fMRI,neuroinformatics,fetal brain,brain ultrasonic imaging,topographic brain mapping,diffusion tensor imaging,computerized knowledge assessment,connectome mapping,brain magnetic resonance imaging,brain abnormalities@@oac_ni@@community", "dh-ch@@Digital Humanities and Cultural Heritage@@This community gathers research results, data, scientific publications and projects related to the domain of Digital Humanities. This broad definition includes Humanities, Cultural Heritage, History, Archaeology and related fields.@@modern art,monuments,europeana data model,sites,field walking,frescoes,LIDO metadata schema,art history,excavation,Arts and Humanities General,cities,coins,temples,numismatics,lithics,roads,environmental archaeology,digital cultural heritage,archaeological reports,history,CRMba,churches,cultural heritage,archaeological stratigraphy,religious art,buidings,digital humanities,survey,archaeological sites,linguistic studies,bioarchaeology,architectural orders,palaeoanthropology,fine arts,europeana,CIDOC CRM,decorations,classic art,stratigraphy,digital archaeology,intangible cultural heritage,walls,humanities,chapels,CRMtex,Language and Literature,paintings,archaeology,fair data,mosaics,burials,architecture,medieval art,castles,CARARE metadata schema,statues,natural language processing,inscriptions,CRMsci,vaults,contemporary art,Arts and Humanities,CRMarchaeo,pottery,site,architectural,vessels@@oac_dh-ch@@community",
"mes@@European Marine Science@@This community was initially defined to include a very broad range of topics, with the intention to generate a number of more focused and sustainable dashboards for research communities and initiatives. As outlined in the logo of this community, we intend to setup a community dashboard for EuroMarine (a consortium of 56 research and academic organisations) and monitoring dashboards for marine research initiatives, including infrastructures (e.g. EMBRC & EMSO), advisory boards (e.g. Marine Boards & ICES), and transnational funding bodies (e.g. JPI-Oceans and Tara Foundation).@@marine,ocean,fish,aqua,sea@@oac_mes@@community", "fam@@Fisheries and Aquaculture Management@@Conservation of marine resources for sustainable development. The Fisheries and Aquaculture community focus on resources (document, data, codes..) which have been produced in the framework of projects (H2020, FP7, ..) related to the domain of fisheries and aquaculture.@@Stock Assessment,pelagic,Acoustic,Fish farming,Fisheries,Fishermen,maximum sustainable yield,trawler,Fishing vessel,Fisherman,Fishing gear,mackerel,RFMO,Fish Aggregating Device,Bycatch,Fishery,common fisheries policy,Fishing fleet,Aquaculture@@fisheries@@community",
"instruct@@Instruct-ERIC@@Instruct-ERIC is the European Research Infrastructure for Structural Biology@@@@oac_instruct@@community", "ni@@Neuroinformatics@@The neuroinformatics dashboard gathers research outputs from the 'neuroinformatics' community at large including the fields of: neuroscience, neuroinformatics, brain imaging databases and standards, brain imaging techniques, neuroimaging methods including statistics and machine learning. The dashboard covers a wide range of imaging methods including (but not limited to): MRI, TEP, EEG, MEG, and studies involving human participants as well as animal studies.@@brain mapping,brain imaging,electroencephalography,arterial spin labelling,brain fingerprinting,brain,neuroimaging,Multimodal Brain Image Analysis,fMRI,neuroinformatics,fetal brain,brain ultrasonic imaging,topographic brain mapping,diffusion tensor imaging,computerized knowledge assessment,connectome mapping,brain magnetic resonance imaging,brain abnormalities@@oac_ni@@community",
"elixir-gr@@The Greek National Node of the ESFRI European RI ELIXIR@@ELIXIR-GR enhances the potential of the Greek bioinformatics community to offer open, easily accessible and state -of- the- art services to the Greek and the international academic community and other stakeholders, such as industry and the health sector. More importantly, by providing these services, the infrastructure facilitates discoveries in the field of the life-sciences, having strong spill over effects in promoting innovation in sectors such as discovery of new drug targets and development of novel therapeutic agents, development of innovative diagnostics, personalized medicine, and development of innovative biotechnological products and processes.@@@@oaa_elixir-gr@@ri", "mes@@European Marine Science@@This community was initially defined to include a very broad range of topics, with the intention to generate a number of more focused and sustainable dashboards for research communities and initiatives. As outlined in the logo of this community, we intend to setup a community dashboard for EuroMarine (a consortium of 56 research and academic organisations) and monitoring dashboards for marine research initiatives, including infrastructures (e.g. EMBRC & EMSO), advisory boards (e.g. Marine Boards & ICES), and transnational funding bodies (e.g. JPI-Oceans and Tara Foundation).@@marine,ocean,fish,aqua,sea@@oac_mes@@community",
"aginfra@@Agricultural and Food Sciences@@The scope of this community is to provide access to publications, research data, projects and software that are related to agricultural and food sciences@@animal production and health,fisheries and aquaculture,food safety and human nutrition,information management,food technology,agri-food education and extension,natural resources and environment,food system,engineering technology and Research,agriculture,food safety risk assessment,food security,farming practices and systems,plant production and protection,agri-food economics and policy,Agri-food,food distribution,forestry@@oac_aginfra@@community", "instruct@@Instruct-ERIC@@Instruct-ERIC is the European Research Infrastructure for Structural Biology@@@@oac_instruct@@community",
"dariah@@DARIAH EU@@The Digital Research Infrastructure for the Arts and Humanities (DARIAH) aims to enhance and support digitally-enabled research and teaching across the arts and humanities. It develops, maintains and operates an infrastructure in support of ICT-based research practices and sustains researchers in using them to build, analyse and interpret digital resources. DARIAH was established as a European Research Infrastructure Consortium (ERIC) in August 2014. Currently, DARIAH has 18 Members and several cooperating partners in eight non-member countries. Here you will find a growing collection of DARIAH-affiliated research outputs and other documents. @@@@dariah@@ri", "elixir-gr@@The Greek National Node of the ESFRI European RI ELIXIR@@ELIXIR-GR enhances the potential of the Greek bioinformatics community to offer open, easily accessible and state -of- the- art services to the Greek and the international academic community and other stakeholders, such as industry and the health sector. More importantly, by providing these services, the infrastructure facilitates discoveries in the field of the life-sciences, having strong spill over effects in promoting innovation in sectors such as discovery of new drug targets and development of novel therapeutic agents, development of innovative diagnostics, personalized medicine, and development of innovative biotechnological products and processes.@@@@oaa_elixir-gr@@ri",
"epos@@European Plate Observing System@@EPOS, the European Plate Observing System, is a long-term plan to facilitate integrated use of data, data products, and facilities from distributed research infrastructures for solid Earth science in Europe.@@@@@@ri", "aginfra@@Agricultural and Food Sciences@@The scope of this community is to provide access to publications, research data, projects and software that are related to agricultural and food sciences@@animal production and health,fisheries and aquaculture,food safety and human nutrition,information management,food technology,agri-food education and extension,natural resources and environment,food system,engineering technology and Research,agriculture,food safety risk assessment,food security,farming practices and systems,plant production and protection,agri-food economics and policy,Agri-food,food distribution,forestry@@oac_aginfra@@community",
"covid-19@@Corona Virus Disease@@This portal provides access to publications, research data, projects and software that may be relevant to the Corona Virus Disease (COVID-19). The OpenAIRE COVID-19 Gateway aggregates COVID-19 related records, links them and provides a single access point for discovery and navigation. We tag content from the OpenAIRE Research Graph (10,000+ data sources) and additional sources. All COVID-19 related research results are linked to people, organizations and projects, providing a contextualized navigation.@@COVID19,SARS-CoV,HCoV-19,mesh:C000657245,MERS-CoV,Síndrome Respiratorio Agudo Severo,mesh:COVID-19,COVID2019,COVID-19,SARS-CoV-2,2019 novel coronavirus,severe acute respiratory syndrome coronavirus 2,Orthocoronavirinae,Coronaviridae,mesh:D045169,coronavirus,SARS,coronaviruses,coronavirus disease-19,sars cov 2,Middle East Respiratory Syndrome,Severe acute respiratory syndrome coronavirus 2,Severe Acute Respiratory Syndrome,coronavirus disease 2019,2019-nCoV@@covid-19@@community"); "dariah@@DARIAH EU@@The Digital Research Infrastructure for the Arts and Humanities (DARIAH) aims to enhance and support digitally-enabled research and teaching across the arts and humanities. It develops, maintains and operates an infrastructure in support of ICT-based research practices and sustains researchers in using them to build, analyse and interpret digital resources. DARIAH was established as a European Research Infrastructure Consortium (ERIC) in August 2014. Currently, DARIAH has 18 Members and several cooperating partners in eight non-member countries. Here you will find a growing collection of DARIAH-affiliated research outputs and other documents. @@@@dariah@@ri",
"epos@@European Plate Observing System@@EPOS, the European Plate Observing System, is a long-term plan to facilitate integrated use of data, data products, and facilities from distributed research infrastructures for solid Earth science in Europe.@@@@@@ri",
"covid-19@@Corona Virus Disease@@This portal provides access to publications, research data, projects and software that may be relevant to the Corona Virus Disease (COVID-19). The OpenAIRE COVID-19 Gateway aggregates COVID-19 related records, links them and provides a single access point for discovery and navigation. We tag content from the OpenAIRE Research Graph (10,000+ data sources) and additional sources. All COVID-19 related research results are linked to people, organizations and projects, providing a contextualized navigation.@@COVID19,SARS-CoV,HCoV-19,mesh:C000657245,MERS-CoV,Síndrome Respiratorio Agudo Severo,mesh:COVID-19,COVID2019,COVID-19,SARS-CoV-2,2019 novel coronavirus,severe acute respiratory syndrome coronavirus 2,Orthocoronavirinae,Coronaviridae,mesh:D045169,coronavirus,SARS,coronaviruses,coronavirus disease-19,sars cov 2,Middle East Respiratory Syndrome,Severe acute respiratory syndrome coronavirus 2,Severe Acute Respiratory Syndrome,coronavirus disease 2019,2019-nCoV@@covid-19@@community");
@Mock
private ISLookUpService isLookUpService;
@Mock private QueryInformationSystem queryInformationSystem;
private ISLookUpService isLookUpService;
private QueryInformationSystem queryInformationSystem; private Map<String, String> map;
private Map<String, String> map; @BeforeEach
public void setUp() throws ISLookUpException {
lenient().when(isLookUpService.quickSearchProfile(XQUERY_ENTITY)).thenReturn(communityMap);
queryInformationSystem = new QueryInformationSystem();
queryInformationSystem.setIsLookUp(isLookUpService);
}
@BeforeEach @Test
public void setUp() throws ISLookUpException { public void test1() throws ISLookUpException, IOException {
lenient().when(isLookUpService.quickSearchProfile(XQUERY_ENTITY)).thenReturn(communityMap); List<ContextInfo> cInfoList = new ArrayList<>();
queryInformationSystem = new QueryInformationSystem(); final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
queryInformationSystem.setIsLookUp(isLookUpService); queryInformationSystem.getContextInformation(consumer);
}
@Test List<ResearchInitiative> riList = new ArrayList<>();
public void test1() throws ISLookUpException, IOException { cInfoList.forEach(cInfo -> riList.add(Process.getEntity(cInfo)));
List<ContextInfo> cInfoList = new ArrayList<>();
final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
queryInformationSystem.getContextInformation(consumer);
List<ResearchInitiative> riList = new ArrayList<>(); Assertions.assertEquals(12, riList.size());
cInfoList.forEach(cInfo -> riList.add(Process.getEntity(cInfo)));
Assertions.assertEquals(12, riList.size()); riList.stream().forEach(c -> {
switch (c.getOriginalId()) {
case "mes":
Assertions
.assertTrue(c.getType().equals(eu.dnetlib.dhp.oa.graph.dump.Constants.RESEARCH_COMMUNITY));
Assertions.assertTrue(((ResearchCommunity) c).getSubject().size() == 5);
Assertions.assertTrue(((ResearchCommunity) c).getSubject().contains("marine"));
Assertions.assertTrue(((ResearchCommunity) c).getSubject().contains("ocean"));
Assertions.assertTrue(((ResearchCommunity) c).getSubject().contains("fish"));
Assertions.assertTrue(((ResearchCommunity) c).getSubject().contains("aqua"));
Assertions.assertTrue(((ResearchCommunity) c).getSubject().contains("sea"));
Assertions
.assertTrue(
c
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID, Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5(c.getOriginalId()))));
Assertions.assertTrue(c.getZenodo_community().equals("https://zenodo.org/communities/oac_mes"));
Assertions.assertTrue("mes".equals(c.getOriginalId()));
break;
case "clarin":
Assertions
.assertTrue(c.getType().equals(eu.dnetlib.dhp.oa.graph.dump.Constants.RESEARCH_INFRASTRUCTURE));
Assertions
.assertTrue(
c
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID, Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5(c.getOriginalId()))));
Assertions.assertTrue(c.getZenodo_community().equals("https://zenodo.org/communities/oac_clarin"));
Assertions.assertTrue("clarin".equals(c.getOriginalId()));
break;
}
// TODO add check for all the others Entities
riList.stream().forEach(c -> { });
switch (c.getOriginalId()){
case "mes":
Assertions.assertTrue(c.getType().equals(eu.dnetlib.dhp.oa.graph.dump.Constants.RESEARCH_COMMUNITY));
Assertions.assertTrue(((ResearchCommunity)c).getSubject().size() == 5);
Assertions.assertTrue(((ResearchCommunity)c).getSubject().contains("marine"));
Assertions.assertTrue(((ResearchCommunity)c).getSubject().contains("ocean"));
Assertions.assertTrue(((ResearchCommunity)c).getSubject().contains("fish"));
Assertions.assertTrue(((ResearchCommunity)c).getSubject().contains("aqua"));
Assertions.assertTrue(((ResearchCommunity)c).getSubject().contains("sea"));
Assertions.assertTrue(c.getId().equals(String.format("%s|%s::%s", Constants.CONTEXT_ID, Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5(c.getOriginalId()))));
Assertions.assertTrue(c.getZenodo_community().equals("https://zenodo.org/communities/oac_mes"));
Assertions.assertTrue("mes".equals(c.getOriginalId()));
break;
case "clarin":
Assertions.assertTrue(c.getType().equals(eu.dnetlib.dhp.oa.graph.dump.Constants.RESEARCH_INFRASTRUCTURE));
Assertions.assertTrue(c.getId().equals(String.format("%s|%s::%s", Constants.CONTEXT_ID, Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5(c.getOriginalId()))));
Assertions.assertTrue(c.getZenodo_community().equals("https://zenodo.org/communities/oac_clarin"));
Assertions.assertTrue("clarin".equals(c.getOriginalId()));
break;
}
//TODO add check for all the others Entities
riList.forEach(c -> System.out.println(new Gson().toJson(c)));
}); }
riList.forEach(c -> System.out.println(new Gson().toJson(c)));
}
} }

968
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/CreateRelationTest.java
View File

@ -1,451 +1,569 @@
package eu.dnetlib.dhp.oa.graph.dump.graph; package eu.dnetlib.dhp.oa.graph.dump.graph;
import com.google.gson.Gson;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
import eu.dnetlib.dhp.schema.oaf.Datasource;
import eu.dnetlib.dhp.utils.DHPUtils;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import java.util.*; import java.util.*;
import java.util.function.Consumer; import java.util.function.Consumer;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import com.google.gson.Gson;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
import eu.dnetlib.dhp.schema.oaf.Datasource;
import eu.dnetlib.dhp.utils.DHPUtils;
public class CreateRelationTest { public class CreateRelationTest {
List<String> communityContext = Arrays
.asList(
"<context id=\"clarin\" label=\"CLARIN\" type=\"ri\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">CLARIN</param>\n" +
" <param name=\"logourl\">https://www.clarin.eu/sites/default/files/clarin-frontpage-logo.jpg</param>\n"
+
" <param name=\"name\">Common Language Resources and Technology Infrastructure</param>\n" +
" <param name=\"manager\">maria@clarin.eu,dieter@clarin.eu,f.m.g.dejong@uu.nl,paolo.manghi@isti.cnr.it</param>\n"
+
" <param name=\"subject\"/>\n" +
" <param name=\"suggestedAcknowledgement\">(Part of) the work reported here was made possible by using the CLARIN infrastructure.</param>\n"
+
" <param name=\"suggestedAcknowledgement\">The work reported here has received funding through &lt;CLARIN national consortium member, e.g. CLARIN.SI&gt;, &lt;XYZ&gt; project, grant no. &lt;XYZ&gt;.</param>\n"
+
" <param name=\"suggestedAcknowledgement\">The work reported here has received funding (through CLARIN ERIC) from the European Union’s Horizon 2020 research and innovation programme under grant agreement No &lt;0-9&gt; for project &lt;XYZ&gt;.\n"
+
" (E.g. No 676529 for project CLARIN-PLUS.)</param>\n" +
" <param name=\"zenodoCommunity\">oac_clarin</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"true\" id=\"clarin::projects\" label=\"CLARIN Projects\">\n" +
" <concept claim=\"false\" id=\"clarin::projects::1\" label=\"CLARIN-PLUS\">\n" +
" <param name=\"projectfullname\">CLARIN-PLUS</param>\n" +
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">676529</param>\n" +
" <param name=\"url\">http://www.clarin.eu</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"funding\">H2020-INFRADEV-1-2015-1</param>\n" +
" <param name=\"acronym\">CLARIN+</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"clarin::projects::2\" label=\"CLARIN\">\n" +
" <param name=\"projectfullname\">Common Language Resources and Technology Infrastructure</param>\n"
+
" <param name=\"acronym\">CLARIN</param>\n" +
" <param name=\"CD_PROJECT_NUMBER\">212230</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"openaireId\">corda_______::ef782b2d85676aa3e5a907427feb18c4</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"clarin::contentproviders\" label=\"CLARIN Content providers\">" +
"<!--<concept claim=\"true\" id=\"clarin::contentproviders::1\" label=\"Zotero\">\n" +
" <param name=\"openaireId\">opendoar____::d96409bf894217686ba124d7356686c9</param>\n"
+
" <param name=\"name\">Public Knowledge Project EPrint Archive</param>\n" +
" <param name=\"officialname\">Public Knowledge Project EPrint Archive</param>\n"
+
" <param name=\"enabled\">true</param>\n" +
" </concept> -->\n" +
" <concept claim=\"false\" id=\"clarin::contentproviders::2\" label=\"\">\n" +
" <param name=\"name\">LINDAT/CLARIN repository</param>\n" +
" <param name=\"officialname\">LINDAT/CLARIN repository</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"true\" id=\"clarin::subcommunity\" label=\"CLARIN communities\">\n" +
" <concept claim=\"true\" id=\"clarin::subcommunity::1\" label=\"CLARIN-D\">\n" +
" <param name=\"fullname\">CLARIN-D</param>\n" +
" <param name=\"homepageUrl\">https://www.clarin-d.de/en/</param>\n" +
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"example\">http://www.lrec-conf.org/proceedings/lrec2018/pdf/504.pdf</param>\n"
+
" <param name=\"nation\">Germany</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"clarin::zenodocommunities\" label=\"CLARIN Zenodo Communities\"/>\n"
+
" <category claim=\"false\" id=\"clarin::organizations\" label=\"CLARIN Organizations\"/>\n" +
"</context>",
"<context id=\"dh-ch\" label=\"Digital Humanities and Cultural Heritage\" type=\"community\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">This community gathers research results, data, scientific publications and projects related to the domain of Digital Humanities. This broad definition includes Humanities, Cultural Heritage, History, Archaeology and related fields.</param>\n"
+
" <param name=\"logourl\">http://sanmamante.org/DH_CH_logo.png</param>\n" +
" <param name=\"name\">Digital Humanities and Cultural Heritage</param>\n" +
" <param name=\"manager\">ileniagalluccio87@gmail.com,achille.felicetti@gmail.com,paolo.manghi@isti.cnr.it,tim.evans@york.ac.uk</param>\n"
+
" <param name=\"subject\">modern art,monuments,europeana data model,sites,field walking,frescoes,LIDO metadata schema,art history,excavation,Arts and Humanities General,cities,coins,temples,numismatics,lithics,roads,environmental archaeology,digital cultural heritage,archaeological reports,history,CRMba,churches,cultural heritage,archaeological stratigraphy,religious art,buidings,digital humanities,survey,archaeological sites,linguistic studies,bioarchaeology,architectural orders,palaeoanthropology,fine arts,europeana,CIDOC CRM,decorations,classic art,stratigraphy,digital archaeology,intangible cultural heritage,walls,humanities,chapels,CRMtex,Language and Literature,paintings,archaeology,fair data,mosaics,burials,architecture,medieval art,castles,CARARE metadata schema,statues,natural language processing,inscriptions,CRMsci,vaults,contemporary art,Arts and Humanities,CRMarchaeo,pottery,site,architectural,vessels</param>\n"
+
" <param name=\"suggestedAcknowledgement\">The present work has been partially supported by the PARTHENOS project, funded by the European Commission (Grant Agreement No. 654119) under the HORIZON 2020 - INFRADEV-4-2014/2015 call</param>\n"
+
" <param name=\"zenodoCommunity\">oac_dh-ch</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"dh-ch::projects\" label=\"DH-CH Projects\">\n" +
" <concept claim=\"false\" id=\"dh-ch::projects::1\" label=\"Pooling Activities, Resources and Tools for Heritage E-research Networking, Optimization and Synergies\">\n"
+
" <param name=\"projectfullname\">Pooling Activities, Resources and Tools for Heritage E-research Networking, Optimization and Synergies</param>\n"
+
" <param name=\"suggestedAcknowledgement\">The present work has been partially supported by the PARTHENOS project, funded by the European Commission (Grant Agreement No. 654119) under the HORIZON 2020 - INFRADEV-4-2014/2015 call</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">654119</param>\n" +
" <param name=\"url\">http://www.parthenos-project.eu</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">PARTHENOS</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"dh-ch::contentproviders\" label=\"DH-CH Content providers\">\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::2\" label=\"The UK's largest collection of digital research data in the social sciences and humanities\">\n"
+
" <param name=\"openaireId\">re3data_____::9ebe127e5f3a0bf401875690f3bb6b81</param>\n" +
" <param name=\"name\">The UK's largest collection of digital research data in the social sciences and humanities</param>\n"
+
" <param name=\"officialname\">UK Data Archive</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::3\" label=\"Journal of Data Mining and Digital Humanities\">\n"
+
" <param name=\"openaireId\">doajarticles::c6cd4b532e12868c1d760a8d7cda6815</param>\n" +
" <param name=\"name\">Journal of Data Mining and Digital Humanities</param>\n" +
" <param name=\"officialname\">Journal of Data Mining and Digital Humanities</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::6\" label=\"Frontiers in Digital Humanities\">\n"
+
" <param name=\"openaireId\">doajarticles::a6de4499bb87bf3c01add0a9e2c9ed0b</param>\n" +
" <param name=\"name\">Frontiers in Digital Humanities</param>\n" +
" <param name=\"officialname\">Frontiers in Digital Humanities</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::7\" label=\"Il Capitale Culturale: Studies on the Value of Cultural Heritage\">\n"
+
" <param name=\"openaireId\">doajarticles::6eb31d13b12bc06bbac06aef63cf33c9</param>\n" +
" <param name=\"name\">Il Capitale Culturale: Studies on the Value of Cultural Heritage</param>\n"
+
" <param name=\"officialname\">Il Capitale Culturale: Studies on the Value of Cultural Heritage</param>\n"
+
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::8\" label=\"Conservation Science in Cultural Heritage\">\n"
+
" <param name=\"openaireId\">doajarticles::0da84e9dfdc8419576169e027baa8028</param>\n" +
" <param name=\"name\">Conservation Science in Cultural Heritage</param>\n" +
" <param name=\"officialname\">Conservation Science in Cultural Heritage</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::9\" label=\"Electronic Archiving System\">\n"
+
" <param name=\"openaireId\">re3data_____::84e123776089ce3c7a33db98d9cd15a8</param>\n" +
" <param name=\"name\">Electronic Archiving System</param>\n" +
" <param name=\"officialname\">EASY</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::10\" label=\"DANS-KB Harvester\">\n" +
" <param name=\"openaireId\">openaire____::c5502a43e76feab55dd00cf50f519125</param>\n" +
" <param name=\"name\">DANS-KB Harvester</param>\n" +
" <param name=\"officialname\">Gemeenschappelijke Harvester DANS-KB</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::11\" label=\"ads\">\n" +
" <param name=\"openaireId\">re3data_____::a48f09c562b247a9919acfe195549b47</param>\n" +
" <param name=\"name\">ads</param>\n" +
" <param name=\"officialname\">Archaeology Data Service</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::12\" label=\"\">\n" +
" <param name=\"openaireId\">opendoar____::97275a23ca44226c9964043c8462be96</param>\n" +
" <param name=\"name\">KNAW Repository</param>\n" +
" <param name=\"officialname\">KNAW Repository</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::13\" label=\"Internet Archaeology\">\n"
+
" <param name=\"openaireId\">doajarticles::2899208a99aa7d142646e0a80bfeef05</param>\n" +
" <param name=\"name\">Internet Archaeology</param>\n" +
" <param name=\"officialname\">Internet Archaeology</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" </category>\n" +
"</context>\n",
"<context id=\"ni\" label=\"Neuroinformatics\" type=\"community\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">The neuroinformatics dashboard gathers research outputs from the 'neuroinformatics' community at large including the fields of: neuroscience, neuroinformatics, brain imaging databases and standards, brain imaging techniques, neuroimaging methods including statistics and machine learning. The dashboard covers a wide range of imaging methods including (but not limited to): MRI, TEP, EEG, MEG, and studies involving human participants as well as animal studies.</param>\n"
+
" <param name=\"logourl\">https://docs.google.com/drawings/u/0/d/10e191xGoGf4uaRluMqbt_7cCj6LSCs2a29im4CmWjqU/export/png</param>\n"
+
" <param name=\"name\">Neuroinformatics</param>\n" +
" <param name=\"manager\">sorina.pop@creatis.insa-lyon.fr,camille.maumet@inria.fr,christian.barillot@irisa.fr,xavier.rolland@irisa.fr,axel.bonnet@creatis.insa-lyon.fr,paolo.manghi@isti.cnr.it</param>\n"
+
" <param name=\"subject\">brain mapping,brain imaging,electroencephalography,arterial spin labelling,brain fingerprinting,brain,neuroimaging,Multimodal Brain Image Analysis,fMRI,neuroinformatics,fetal brain,brain ultrasonic imaging,topographic brain mapping,diffusion tensor imaging,computerized knowledge assessment,connectome mapping,brain magnetic resonance imaging,brain abnormalities</param>\n"
+
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"zenodoCommunity\">oac_ni</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"ni::contentproviders\" label=\"NI Content providers\">\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::1\" label=\"OpenNeuro\">\n" +
" <param name=\"openaireId\">re3data_____::5b9bf9171d92df854cf3c520692e9122</param>\n" +
" <param name=\"name\">Formerly:OpenFMRI</param>\n" +
" <param name=\"officialname\">OpenNeuro</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::2\" label=\"RIO\">\n" +
" <param name=\"openaireId\">doajarticles::c7d3de67dc77af72f6747157441252ec</param>\n" +
" <param name=\"name\">Research Ideas and Outcomes</param>\n" +
" <param name=\"officialname\">Research Ideas and Outcomes</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::3\" label=\"NITRC\">\n" +
" <param name=\"openaireId\">re3data_____::8515794670370f49c1d176c399c714f5</param>\n" +
" <param name=\"name\">Neuroimaging Informatics Tools and Resources Clearinghouse</param>\n"
+
" <param name=\"officialname\">NITRC</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::4\" label=\"FRONTIERSNI\">\n" +
" <param name=\"openaireId\">doajarticles::d640648c84b10d425f96f11c3de468f3</param>\n" +
" <param name=\"name\">Frontiers in Neuroinformatics</param>\n" +
" <param name=\"officialname\">Frontiers in Neuroinformatics</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::5\" label=\"NeuroImage: Clinical\">\n" +
" <param name=\"openaireId\">doajarticles::0c0e74daa5d95504eade9c81ebbd5b8a</param>\n" +
" <param name=\"name\">NeuroImage: Clinical</param>\n" +
" <param name=\"officialname\">NeuroImage: Clinical</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::6\" label=\"NeuroVault\">\n" +
" <param name=\"openaireId\">rest________::fb1a3d4523c95e63496e3bc7ba36244b</param>\n" +
" <param name=\"name\">NeuroVault</param>\n" +
" <param name=\"officialname\">NeuroVault</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" </category>\n" +
"</context>\n",
"<context id=\"instruct\" label=\"Instruct-ERIC\" type=\"ri\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">Instruct-ERIC is the European Research Infrastructure for Structural Biology</param>\n"
+
" <param name=\"logourl\">https://instruct-eric.eu/templates/instructeric/images/logos/instruct-eric-logo-noline.png</param>\n"
+
" <param name=\"name\">Instruct-ERIC</param>\n" +
" <param name=\"manager\">claudia@instruct-eric.eu,carazo@cnb.csic.es,echrysina@eie.gr,susan@instruct-eric.eu,naomi@instruct-eric.eu,natalie@instruct-eric.eu,pmarie@igbmc.fr,darren.hart@ibs.fr,claudia@strubi.ox.ac.uk,paolo.manghi@isti.cnr.it</param>\n"
+
" <param name=\"subject\"/>\n" +
" <param name=\"suggestedAcknowledgement\">The authors acknowledge the support and the use of resources of Instruct-ERIC.</param>\n"
+
" <param name=\"suggestedAcknowledgement\">The authors acknowledge the support and the use of resources of Instruct (PID # or APPID #), a Landmark ESFRI project</param>\n"
+
" <param name=\"zenodoCommunity\">oac_instruct</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"instruct::projects\" label=\"Instruct-ERIC Projects\">\n" +
" <concept claim=\"false\" id=\"instruct::projects::1\" label=\"Authentication and Authorisation For Research and Collaboration\">\n"
+
" <param name=\"projectfullname\">Authentication and Authorisation For Research and Collaboration</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">730941</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-EINFRA-2016-1</param>\n" +
" <param name=\"acronym\">AARC2</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::2\" label=\"Building data bridges between biological and medical infrastructures in Europe\">\n"
+
" <param name=\"projectfullname\">Building data bridges between biological and medical infrastructures in Europe</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">284209</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2011-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">BioMedBridges</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::3\" label=\"Transnational access and enhancement of integrated Biological Structure determination at synchrotron X-ray radiation facilities\">\n"
+
" <param name=\"projectfullname\">Transnational access and enhancement of integrated Biological Structure determination at synchrotron X-ray radiation facilities</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">283570</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2011-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">BioStruct-X</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::4\" label=\"Coordinated Research Infrastructures Building Enduring Life-science services\">\n"
+
" <param name=\"projectfullname\">Coordinated Research Infrastructures Building Enduring Life-science services</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">654248</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRADEV-1-2014-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">CORBEL</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::5\" label=\"Infrastructure for NMR, EM and X-rays for translational research\">\n"
+
" <param name=\"projectfullname\">Infrastructure for NMR, EM and X-rays for translational research</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">653706</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRAIA-2014-2015</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">iNEXT</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::6\" label=\"Integrated Structural Biology Infrastructure\">\n"
+
" <param name=\"projectfullname\">Integrated Structural Biology Infrastructure</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">211252</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2007-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">INSTRUCT</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::7\" label=\"Releasing the full potential of Instruct to expand and consolidate infrastructure services for integrated structural life science research\">\n"
+
" <param name=\"projectfullname\">Releasing the full potential of Instruct to expand and consolidate infrastructure services for integrated structural life science research</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">731005</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRADEV-2016-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">INSTRUCT-ULTRA</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::8\" label=\"Opening Synchrotron Light for Experimental Science and Applications in the Middle East\">\n"
+
" <param name=\"projectfullname\">Opening Synchrotron Light for Experimental Science and Applications in the Middle East</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">730943</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRASUPP-2016-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">OPEN SESAME</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::9\" label=\"Infrastructure for Protein Production Platforms\">\n"
+
" <param name=\"projectfullname\">Infrastructure for Protein Production Platforms</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">227764</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2008-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">PCUBE</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::10\" label=\"European Vaccine Research and Development Infrastructure\">\n"
+
" <param name=\"projectfullname\">European Vaccine Research and Development Infrastructure</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">730964</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRAIA-2016-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">TRAMSVAC2</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::11\" label=\"World-wide E-infrastructure for structural biology\">\n"
+
" <param name=\"projectfullname\">World-wide E-infrastructure for structural biology</param>\n"
+
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">675858</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-EINFRA-2015-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">West-Life</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::12\" label=\"RI-VIS\">\n" +
" <param name=\"projectfullname\">Expanding research infrastructure visibility to strengthen strategic partnerships</param>\n"
+
" <param name=\"acronym\">RI-VIS</param>\n" +
" <param name=\"CD_PROJECT_NUMBER\">824063</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"openaireId\">corda__h2020::af93b591b76991d8437993a8f6fc6538</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"instruct::contentproviders\" label=\"Instruct-ERIC Content providers\"/>\n"
+
" <category claim=\"false\" id=\"instruct::zenodocommunities\" label=\"Instruct-ERIC Zenodo Communities\">\n"
+
" <concept claim=\"false\" id=\"instruct::zenodocommunities::1\" label=\"Instruct\">\n" +
" <param name=\"zenodoid\">instruct</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::zenodocommunities::2\" label=\"West-Life Virtual Research Environment for Structural Biology\">\n"
+
" <param name=\"zenodoid\">west-life</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"instruct::organizations\" label=\"Instruct-ERIC Organizations\">\n"
+
" <concept claim=\"false\" id=\"instruct::organizations::1\" label=\"FRISBI\">\n" +
" <param name=\"name\">FRISBI</param>\n" +
" <param name=\"logourl\">aHR0cDovL2ZyaXNiaS5ldS9zdGF0aWMvaW1hZ2VzL2xvZ29zL2xvZ28tZnJpc2JpLnBuZw==</param>\n"
+
" <param name=\"websiteurl\">aHR0cDovL2ZyaXNiaS5ldS8=</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::organizations::2\" label=\"RI-VIS\">\n" +
" <param name=\"name\">RI-VIS</param>\n" +
" <param name=\"logourl\">aHR0cHM6Ly9yaS12aXMuZXUvbmV0d29yay9yaXZpcy90ZW1wbGF0ZXMvcml2aXMvaW1hZ2VzL1JJLVZJU0xvZ29GaW5hbC0wNi5wbmc=</param>\n"
+
" <param name=\"websiteurl\">aHR0cHM6Ly9yaS12aXMuZXU=</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::organizations::3\" label=\"CIISB\">\n" +
" <param name=\"name\">CIISB</param>\n" +
" <param name=\"logourl\">aHR0cDovL2JpYy5jZWl0ZWMuY3ovZmlsZXMvMjkyLzEyNS5KUEc=</param>\n" +
" <param name=\"websiteurl\">aHR0cHM6Ly93d3cuY2lpc2Iub3Jn</param>\n" +
" </concept>\n" +
" </category>\n" +
"</context>\n",
"<context id=\"elixir-gr\" label=\"ELIXIR GR\" type=\"ri\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">ELIXIR-GR enhances the potential of the Greek bioinformatics community to offer open, easily accessible and state -of- the- art services to the Greek and the international academic community and other stakeholders, such as industry and the health sector. More importantly, by providing these services, the infrastructure facilitates discoveries in the field of the life-sciences, having strong spill over effects in promoting innovation in sectors such as discovery of new drug targets and development of novel therapeutic agents, development of innovative diagnostics, personalized medicine, and development of innovative biotechnological products and processes.</param>\n"
+
" <param name=\"logourl\">https://elixir-greece.org/sites/default/files/ELIXIR_GREECE_white_background.png</param>\n"
+
" <param name=\"name\">The Greek National Node of the ESFRI European RI ELIXIR</param>\n" +
" <param name=\"manager\">vergoulis@imis.athena-innovation.gr,schatz@imis.athena-innovation.gr,paolo.manghi@isti.cnr.it</param>\n"
+
" <param name=\"subject\"/>\n" +
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"zenodoCommunity\">oaa_elixir-gr</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"elixir-gr::projects\" label=\"ELIXIR GR Projects\"/>\n" +
" <category claim=\"false\" id=\"elixir-gr::contentproviders\" label=\"Elixir-GR Content providers\">\n"
+
" <concept claim=\"false\" id=\"elixir-gr::contentproviders::1\" label=\"bio.tools\">\n" +
" <param name=\"openaireId\">rest________::b8e502674c3c3499d5374e9b2ea6d8d5</param>\n" +
" <param name=\"name\">bio.tools</param>\n" +
" <param name=\"officialname\">bio.tools</param>\n" +
" <param name=\"enabled\">false</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"elixir-gr::zenodocommunities\" label=\"Elixir-GR Zenodo Communities\"/>\n"
+
" <category claim=\"false\" id=\"elixir-gr::organizations\" label=\"Elixir-GR Organizations\">\n" +
" <concept claim=\"false\" id=\"elixir-gr::organizations::1\" label=\"ATHENA RC\">\n" +
" <param name=\"name\">ATHENA RC</param>\n" +
" <param name=\"logourl\">aHR0cHM6Ly9lbGl4aXItZ3JlZWNlLm9yZy9zaXRlcy9kZWZhdWx0L2ZpbGVzL3N0eWxlcy90aHVtYm5haWwvcHVibGljL3BhcnRuZXJfbG9nb3MvYXRoZW5hX2xvZ28uanBnP2l0b2s9VXdGWFNpZng=</param>\n"
+
" <param name=\"websiteurl\">aHR0cHM6Ly93d3cuYXRoZW5hLWlubm92YXRpb24uZ3IvZW4=</param>\n" +
" </concept>\n" +
" </category><!-- <category claim=\"false\" id=\"elixir-gr::resultorganizations\" label=\"Elixir-GR Results through organizations\"/> -->\n"
+
"</context>");
List <String> communityContext = Arrays.asList("<context id=\"clarin\" label=\"CLARIN\" type=\"ri\">\n" + private QueryInformationSystem queryInformationSystem;
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">CLARIN</param>\n" +
" <param name=\"logourl\">https://www.clarin.eu/sites/default/files/clarin-frontpage-logo.jpg</param>\n" +
" <param name=\"name\">Common Language Resources and Technology Infrastructure</param>\n" +
" <param name=\"manager\">maria@clarin.eu,dieter@clarin.eu,f.m.g.dejong@uu.nl,paolo.manghi@isti.cnr.it</param>\n" +
" <param name=\"subject\"/>\n" +
" <param name=\"suggestedAcknowledgement\">(Part of) the work reported here was made possible by using the CLARIN infrastructure.</param>\n" +
" <param name=\"suggestedAcknowledgement\">The work reported here has received funding through &lt;CLARIN national consortium member, e.g. CLARIN.SI&gt;, &lt;XYZ&gt; project, grant no. &lt;XYZ&gt;.</param>\n" +
" <param name=\"suggestedAcknowledgement\">The work reported here has received funding (through CLARIN ERIC) from the European Union’s Horizon 2020 research and innovation programme under grant agreement No &lt;0-9&gt; for project &lt;XYZ&gt;.\n" +
" (E.g. No 676529 for project CLARIN-PLUS.)</param>\n" +
" <param name=\"zenodoCommunity\">oac_clarin</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"true\" id=\"clarin::projects\" label=\"CLARIN Projects\">\n" +
" <concept claim=\"false\" id=\"clarin::projects::1\" label=\"CLARIN-PLUS\">\n" +
" <param name=\"projectfullname\">CLARIN-PLUS</param>\n" +
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">676529</param>\n" +
" <param name=\"url\">http://www.clarin.eu</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"funding\">H2020-INFRADEV-1-2015-1</param>\n" +
" <param name=\"acronym\">CLARIN+</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"clarin::projects::2\" label=\"CLARIN\">\n" +
" <param name=\"projectfullname\">Common Language Resources and Technology Infrastructure</param>\n" +
" <param name=\"acronym\">CLARIN</param>\n" +
" <param name=\"CD_PROJECT_NUMBER\">212230</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"openaireId\">corda_______::ef782b2d85676aa3e5a907427feb18c4</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"clarin::contentproviders\" label=\"CLARIN Content providers\">" +
"<!--<concept claim=\"true\" id=\"clarin::contentproviders::1\" label=\"Zotero\">\n" +
" <param name=\"openaireId\">opendoar____::d96409bf894217686ba124d7356686c9</param>\n" +
" <param name=\"name\">Public Knowledge Project EPrint Archive</param>\n" +
" <param name=\"officialname\">Public Knowledge Project EPrint Archive</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept> -->\n" +
" <concept claim=\"false\" id=\"clarin::contentproviders::2\" label=\"\">\n" +
" <param name=\"name\">LINDAT/CLARIN repository</param>\n" +
" <param name=\"officialname\">LINDAT/CLARIN repository</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"true\" id=\"clarin::subcommunity\" label=\"CLARIN communities\">\n" +
" <concept claim=\"true\" id=\"clarin::subcommunity::1\" label=\"CLARIN-D\">\n" +
" <param name=\"fullname\">CLARIN-D</param>\n" +
" <param name=\"homepageUrl\">https://www.clarin-d.de/en/</param>\n" +
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"example\">http://www.lrec-conf.org/proceedings/lrec2018/pdf/504.pdf</param>\n" +
" <param name=\"nation\">Germany</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"clarin::zenodocommunities\" label=\"CLARIN Zenodo Communities\"/>\n" +
" <category claim=\"false\" id=\"clarin::organizations\" label=\"CLARIN Organizations\"/>\n" +
"</context>",
"<context id=\"dh-ch\" label=\"Digital Humanities and Cultural Heritage\" type=\"community\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">This community gathers research results, data, scientific publications and projects related to the domain of Digital Humanities. This broad definition includes Humanities, Cultural Heritage, History, Archaeology and related fields.</param>\n" +
" <param name=\"logourl\">http://sanmamante.org/DH_CH_logo.png</param>\n" +
" <param name=\"name\">Digital Humanities and Cultural Heritage</param>\n" +
" <param name=\"manager\">ileniagalluccio87@gmail.com,achille.felicetti@gmail.com,paolo.manghi@isti.cnr.it,tim.evans@york.ac.uk</param>\n" +
" <param name=\"subject\">modern art,monuments,europeana data model,sites,field walking,frescoes,LIDO metadata schema,art history,excavation,Arts and Humanities General,cities,coins,temples,numismatics,lithics,roads,environmental archaeology,digital cultural heritage,archaeological reports,history,CRMba,churches,cultural heritage,archaeological stratigraphy,religious art,buidings,digital humanities,survey,archaeological sites,linguistic studies,bioarchaeology,architectural orders,palaeoanthropology,fine arts,europeana,CIDOC CRM,decorations,classic art,stratigraphy,digital archaeology,intangible cultural heritage,walls,humanities,chapels,CRMtex,Language and Literature,paintings,archaeology,fair data,mosaics,burials,architecture,medieval art,castles,CARARE metadata schema,statues,natural language processing,inscriptions,CRMsci,vaults,contemporary art,Arts and Humanities,CRMarchaeo,pottery,site,architectural,vessels</param>\n" +
" <param name=\"suggestedAcknowledgement\">The present work has been partially supported by the PARTHENOS project, funded by the European Commission (Grant Agreement No. 654119) under the HORIZON 2020 - INFRADEV-4-2014/2015 call</param>\n" +
" <param name=\"zenodoCommunity\">oac_dh-ch</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"dh-ch::projects\" label=\"DH-CH Projects\">\n" +
" <concept claim=\"false\" id=\"dh-ch::projects::1\" label=\"Pooling Activities, Resources and Tools for Heritage E-research Networking, Optimization and Synergies\">\n" +
" <param name=\"projectfullname\">Pooling Activities, Resources and Tools for Heritage E-research Networking, Optimization and Synergies</param>\n" +
" <param name=\"suggestedAcknowledgement\">The present work has been partially supported by the PARTHENOS project, funded by the European Commission (Grant Agreement No. 654119) under the HORIZON 2020 - INFRADEV-4-2014/2015 call</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">654119</param>\n" +
" <param name=\"url\">http://www.parthenos-project.eu</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">PARTHENOS</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"dh-ch::contentproviders\" label=\"DH-CH Content providers\">\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::2\" label=\"The UK's largest collection of digital research data in the social sciences and humanities\">\n" +
" <param name=\"openaireId\">re3data_____::9ebe127e5f3a0bf401875690f3bb6b81</param>\n" +
" <param name=\"name\">The UK's largest collection of digital research data in the social sciences and humanities</param>\n" +
" <param name=\"officialname\">UK Data Archive</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::3\" label=\"Journal of Data Mining and Digital Humanities\">\n" +
" <param name=\"openaireId\">doajarticles::c6cd4b532e12868c1d760a8d7cda6815</param>\n" +
" <param name=\"name\">Journal of Data Mining and Digital Humanities</param>\n" +
" <param name=\"officialname\">Journal of Data Mining and Digital Humanities</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::6\" label=\"Frontiers in Digital Humanities\">\n" +
" <param name=\"openaireId\">doajarticles::a6de4499bb87bf3c01add0a9e2c9ed0b</param>\n" +
" <param name=\"name\">Frontiers in Digital Humanities</param>\n" +
" <param name=\"officialname\">Frontiers in Digital Humanities</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::7\" label=\"Il Capitale Culturale: Studies on the Value of Cultural Heritage\">\n" +
" <param name=\"openaireId\">doajarticles::6eb31d13b12bc06bbac06aef63cf33c9</param>\n" +
" <param name=\"name\">Il Capitale Culturale: Studies on the Value of Cultural Heritage</param>\n" +
" <param name=\"officialname\">Il Capitale Culturale: Studies on the Value of Cultural Heritage</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::8\" label=\"Conservation Science in Cultural Heritage\">\n" +
" <param name=\"openaireId\">doajarticles::0da84e9dfdc8419576169e027baa8028</param>\n" +
" <param name=\"name\">Conservation Science in Cultural Heritage</param>\n" +
" <param name=\"officialname\">Conservation Science in Cultural Heritage</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::9\" label=\"Electronic Archiving System\">\n" +
" <param name=\"openaireId\">re3data_____::84e123776089ce3c7a33db98d9cd15a8</param>\n" +
" <param name=\"name\">Electronic Archiving System</param>\n" +
" <param name=\"officialname\">EASY</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::10\" label=\"DANS-KB Harvester\">\n" +
" <param name=\"openaireId\">openaire____::c5502a43e76feab55dd00cf50f519125</param>\n" +
" <param name=\"name\">DANS-KB Harvester</param>\n" +
" <param name=\"officialname\">Gemeenschappelijke Harvester DANS-KB</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::11\" label=\"ads\">\n" +
" <param name=\"openaireId\">re3data_____::a48f09c562b247a9919acfe195549b47</param>\n" +
" <param name=\"name\">ads</param>\n" +
" <param name=\"officialname\">Archaeology Data Service</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::12\" label=\"\">\n" +
" <param name=\"openaireId\">opendoar____::97275a23ca44226c9964043c8462be96</param>\n" +
" <param name=\"name\">KNAW Repository</param>\n" +
" <param name=\"officialname\">KNAW Repository</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"dh-ch::contentproviders::13\" label=\"Internet Archaeology\">\n" +
" <param name=\"openaireId\">doajarticles::2899208a99aa7d142646e0a80bfeef05</param>\n" +
" <param name=\"name\">Internet Archaeology</param>\n" +
" <param name=\"officialname\">Internet Archaeology</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" </category>\n" +
"</context>\n" ,
"<context id=\"ni\" label=\"Neuroinformatics\" type=\"community\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">The neuroinformatics dashboard gathers research outputs from the 'neuroinformatics' community at large including the fields of: neuroscience, neuroinformatics, brain imaging databases and standards, brain imaging techniques, neuroimaging methods including statistics and machine learning. The dashboard covers a wide range of imaging methods including (but not limited to): MRI, TEP, EEG, MEG, and studies involving human participants as well as animal studies.</param>\n" +
" <param name=\"logourl\">https://docs.google.com/drawings/u/0/d/10e191xGoGf4uaRluMqbt_7cCj6LSCs2a29im4CmWjqU/export/png</param>\n" +
" <param name=\"name\">Neuroinformatics</param>\n" +
" <param name=\"manager\">sorina.pop@creatis.insa-lyon.fr,camille.maumet@inria.fr,christian.barillot@irisa.fr,xavier.rolland@irisa.fr,axel.bonnet@creatis.insa-lyon.fr,paolo.manghi@isti.cnr.it</param>\n" +
" <param name=\"subject\">brain mapping,brain imaging,electroencephalography,arterial spin labelling,brain fingerprinting,brain,neuroimaging,Multimodal Brain Image Analysis,fMRI,neuroinformatics,fetal brain,brain ultrasonic imaging,topographic brain mapping,diffusion tensor imaging,computerized knowledge assessment,connectome mapping,brain magnetic resonance imaging,brain abnormalities</param>\n" +
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"zenodoCommunity\">oac_ni</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"ni::contentproviders\" label=\"NI Content providers\">\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::1\" label=\"OpenNeuro\">\n" +
" <param name=\"openaireId\">re3data_____::5b9bf9171d92df854cf3c520692e9122</param>\n" +
" <param name=\"name\">Formerly:OpenFMRI</param>\n" +
" <param name=\"officialname\">OpenNeuro</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::2\" label=\"RIO\">\n" +
" <param name=\"openaireId\">doajarticles::c7d3de67dc77af72f6747157441252ec</param>\n" +
" <param name=\"name\">Research Ideas and Outcomes</param>\n" +
" <param name=\"officialname\">Research Ideas and Outcomes</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::3\" label=\"NITRC\">\n" +
" <param name=\"openaireId\">re3data_____::8515794670370f49c1d176c399c714f5</param>\n" +
" <param name=\"name\">Neuroimaging Informatics Tools and Resources Clearinghouse</param>\n" +
" <param name=\"officialname\">NITRC</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::4\" label=\"FRONTIERSNI\">\n" +
" <param name=\"openaireId\">doajarticles::d640648c84b10d425f96f11c3de468f3</param>\n" +
" <param name=\"name\">Frontiers in Neuroinformatics</param>\n" +
" <param name=\"officialname\">Frontiers in Neuroinformatics</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::5\" label=\"NeuroImage: Clinical\">\n" +
" <param name=\"openaireId\">doajarticles::0c0e74daa5d95504eade9c81ebbd5b8a</param>\n" +
" <param name=\"name\">NeuroImage: Clinical</param>\n" +
" <param name=\"officialname\">NeuroImage: Clinical</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::6\" label=\"NeuroVault\">\n" +
" <param name=\"openaireId\">rest________::fb1a3d4523c95e63496e3bc7ba36244b</param>\n" +
" <param name=\"name\">NeuroVault</param>\n" +
" <param name=\"officialname\">NeuroVault</param>\n" +
" <param name=\"enabled\">true</param>\n" +
" </concept>\n" +
" </category>\n" +
"</context>\n" ,
"<context id=\"instruct\" label=\"Instruct-ERIC\" type=\"ri\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">Instruct-ERIC is the European Research Infrastructure for Structural Biology</param>\n" +
" <param name=\"logourl\">https://instruct-eric.eu/templates/instructeric/images/logos/instruct-eric-logo-noline.png</param>\n" +
" <param name=\"name\">Instruct-ERIC</param>\n" +
" <param name=\"manager\">claudia@instruct-eric.eu,carazo@cnb.csic.es,echrysina@eie.gr,susan@instruct-eric.eu,naomi@instruct-eric.eu,natalie@instruct-eric.eu,pmarie@igbmc.fr,darren.hart@ibs.fr,claudia@strubi.ox.ac.uk,paolo.manghi@isti.cnr.it</param>\n" +
" <param name=\"subject\"/>\n" +
" <param name=\"suggestedAcknowledgement\">The authors acknowledge the support and the use of resources of Instruct-ERIC.</param>\n" +
" <param name=\"suggestedAcknowledgement\">The authors acknowledge the support and the use of resources of Instruct (PID # or APPID #), a Landmark ESFRI project</param>\n" +
" <param name=\"zenodoCommunity\">oac_instruct</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"instruct::projects\" label=\"Instruct-ERIC Projects\">\n" +
" <concept claim=\"false\" id=\"instruct::projects::1\" label=\"Authentication and Authorisation For Research and Collaboration\">\n" +
" <param name=\"projectfullname\">Authentication and Authorisation For Research and Collaboration</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">730941</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-EINFRA-2016-1</param>\n" +
" <param name=\"acronym\">AARC2</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::2\" label=\"Building data bridges between biological and medical infrastructures in Europe\">\n" +
" <param name=\"projectfullname\">Building data bridges between biological and medical infrastructures in Europe</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">284209</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2011-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">BioMedBridges</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::3\" label=\"Transnational access and enhancement of integrated Biological Structure determination at synchrotron X-ray radiation facilities\">\n" +
" <param name=\"projectfullname\">Transnational access and enhancement of integrated Biological Structure determination at synchrotron X-ray radiation facilities</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">283570</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2011-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">BioStruct-X</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::4\" label=\"Coordinated Research Infrastructures Building Enduring Life-science services\">\n" +
" <param name=\"projectfullname\">Coordinated Research Infrastructures Building Enduring Life-science services</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">654248</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRADEV-1-2014-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">CORBEL</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::5\" label=\"Infrastructure for NMR, EM and X-rays for translational research\">\n" +
" <param name=\"projectfullname\">Infrastructure for NMR, EM and X-rays for translational research</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">653706</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRAIA-2014-2015</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">iNEXT</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::6\" label=\"Integrated Structural Biology Infrastructure\">\n" +
" <param name=\"projectfullname\">Integrated Structural Biology Infrastructure</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">211252</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2007-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">INSTRUCT</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::7\" label=\"Releasing the full potential of Instruct to expand and consolidate infrastructure services for integrated structural life science research\">\n" +
" <param name=\"projectfullname\">Releasing the full potential of Instruct to expand and consolidate infrastructure services for integrated structural life science research</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">731005</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRADEV-2016-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">INSTRUCT-ULTRA</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::8\" label=\"Opening Synchrotron Light for Experimental Science and Applications in the Middle East\">\n" +
" <param name=\"projectfullname\">Opening Synchrotron Light for Experimental Science and Applications in the Middle East</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">730943</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRASUPP-2016-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">OPEN SESAME</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::9\" label=\"Infrastructure for Protein Production Platforms\">\n" +
" <param name=\"projectfullname\">Infrastructure for Protein Production Platforms</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">227764</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">FP7-INFRASTRUCTURES-2008-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">PCUBE</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::10\" label=\"European Vaccine Research and Development Infrastructure\">\n" +
" <param name=\"projectfullname\">European Vaccine Research and Development Infrastructure</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">730964</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-INFRAIA-2016-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">TRAMSVAC2</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::11\" label=\"World-wide E-infrastructure for structural biology\">\n" +
" <param name=\"projectfullname\">World-wide E-infrastructure for structural biology</param>\n" +
" <param name=\"rule\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">675858</param>\n" +
" <param name=\"url\"/>\n" +
" <param name=\"funding\">H2020-EINFRA-2015-1</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"acronym\">West-Life</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::projects::12\" label=\"RI-VIS\">\n" +
" <param name=\"projectfullname\">Expanding research infrastructure visibility to strengthen strategic partnerships</param>\n" +
" <param name=\"acronym\">RI-VIS</param>\n" +
" <param name=\"CD_PROJECT_NUMBER\">824063</param>\n" +
" <param name=\"funder\">EC</param>\n" +
" <param name=\"openaireId\">corda__h2020::af93b591b76991d8437993a8f6fc6538</param>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"instruct::contentproviders\" label=\"Instruct-ERIC Content providers\"/>\n" +
" <category claim=\"false\" id=\"instruct::zenodocommunities\" label=\"Instruct-ERIC Zenodo Communities\">\n" +
" <concept claim=\"false\" id=\"instruct::zenodocommunities::1\" label=\"Instruct\">\n" +
" <param name=\"zenodoid\">instruct</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::zenodocommunities::2\" label=\"West-Life Virtual Research Environment for Structural Biology\">\n" +
" <param name=\"zenodoid\">west-life</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"instruct::organizations\" label=\"Instruct-ERIC Organizations\">\n" +
" <concept claim=\"false\" id=\"instruct::organizations::1\" label=\"FRISBI\">\n" +
" <param name=\"name\">FRISBI</param>\n" +
" <param name=\"logourl\">aHR0cDovL2ZyaXNiaS5ldS9zdGF0aWMvaW1hZ2VzL2xvZ29zL2xvZ28tZnJpc2JpLnBuZw==</param>\n" +
" <param name=\"websiteurl\">aHR0cDovL2ZyaXNiaS5ldS8=</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::organizations::2\" label=\"RI-VIS\">\n" +
" <param name=\"name\">RI-VIS</param>\n" +
" <param name=\"logourl\">aHR0cHM6Ly9yaS12aXMuZXUvbmV0d29yay9yaXZpcy90ZW1wbGF0ZXMvcml2aXMvaW1hZ2VzL1JJLVZJU0xvZ29GaW5hbC0wNi5wbmc=</param>\n" +
" <param name=\"websiteurl\">aHR0cHM6Ly9yaS12aXMuZXU=</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"instruct::organizations::3\" label=\"CIISB\">\n" +
" <param name=\"name\">CIISB</param>\n" +
" <param name=\"logourl\">aHR0cDovL2JpYy5jZWl0ZWMuY3ovZmlsZXMvMjkyLzEyNS5KUEc=</param>\n" +
" <param name=\"websiteurl\">aHR0cHM6Ly93d3cuY2lpc2Iub3Jn</param>\n" +
" </concept>\n" +
" </category>\n" +
"</context>\n" ,
"<context id=\"elixir-gr\" label=\"ELIXIR GR\" type=\"ri\">\n" +
" <param name=\"status\">all</param>\n" +
" <param name=\"description\">ELIXIR-GR enhances the potential of the Greek bioinformatics community to offer open, easily accessible and state -of- the- art services to the Greek and the international academic community and other stakeholders, such as industry and the health sector. More importantly, by providing these services, the infrastructure facilitates discoveries in the field of the life-sciences, having strong spill over effects in promoting innovation in sectors such as discovery of new drug targets and development of novel therapeutic agents, development of innovative diagnostics, personalized medicine, and development of innovative biotechnological products and processes.</param>\n" +
" <param name=\"logourl\">https://elixir-greece.org/sites/default/files/ELIXIR_GREECE_white_background.png</param>\n" +
" <param name=\"name\">The Greek National Node of the ESFRI European RI ELIXIR</param>\n" +
" <param name=\"manager\">vergoulis@imis.athena-innovation.gr,schatz@imis.athena-innovation.gr,paolo.manghi@isti.cnr.it</param>\n" +
" <param name=\"subject\"/>\n" +
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"zenodoCommunity\">oaa_elixir-gr</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"elixir-gr::projects\" label=\"ELIXIR GR Projects\"/>\n" +
" <category claim=\"false\" id=\"elixir-gr::contentproviders\" label=\"Elixir-GR Content providers\">\n" +
" <concept claim=\"false\" id=\"elixir-gr::contentproviders::1\" label=\"bio.tools\">\n" +
" <param name=\"openaireId\">rest________::b8e502674c3c3499d5374e9b2ea6d8d5</param>\n" +
" <param name=\"name\">bio.tools</param>\n" +
" <param name=\"officialname\">bio.tools</param>\n" +
" <param name=\"enabled\">false</param>\n" +
" <param name=\"selcriteria\"/>\n" +
" </concept>\n" +
" </category>\n" +
" <category claim=\"false\" id=\"elixir-gr::zenodocommunities\" label=\"Elixir-GR Zenodo Communities\"/>\n" +
" <category claim=\"false\" id=\"elixir-gr::organizations\" label=\"Elixir-GR Organizations\">\n" +
" <concept claim=\"false\" id=\"elixir-gr::organizations::1\" label=\"ATHENA RC\">\n" +
" <param name=\"name\">ATHENA RC</param>\n" +
" <param name=\"logourl\">aHR0cHM6Ly9lbGl4aXItZ3JlZWNlLm9yZy9zaXRlcy9kZWZhdWx0L2ZpbGVzL3N0eWxlcy90aHVtYm5haWwvcHVibGljL3BhcnRuZXJfbG9nb3MvYXRoZW5hX2xvZ28uanBnP2l0b2s9VXdGWFNpZng=</param>\n" +
" <param name=\"websiteurl\">aHR0cHM6Ly93d3cuYXRoZW5hLWlubm92YXRpb24uZ3IvZW4=</param>\n" +
" </concept>\n" +
" </category><!-- <category claim=\"false\" id=\"elixir-gr::resultorganizations\" label=\"Elixir-GR Results through organizations\"/> -->\n" +
"</context>");
private QueryInformationSystem queryInformationSystem; private Map<String, String> map;
private Map<String, String> map; @BeforeEach
public void setUp() {
@BeforeEach queryInformationSystem = new QueryInformationSystem();
public void setUp() { queryInformationSystem.setContextRelationResult(communityContext);
}
queryInformationSystem = new QueryInformationSystem(); @Test
queryInformationSystem.setContextRelationResult(communityContext); public void test1() {
} List<ContextInfo> cInfoList = new ArrayList<>();
final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
@Test queryInformationSystem
public void test1(){ .getContextRelation(consumer, "contentproviders", ModelSupport.getIdPrefix(Datasource.class));
List<ContextInfo> cInfoList = new ArrayList<>();
final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
queryInformationSystem.getContextRelation(consumer, "contentproviders", ModelSupport.getIdPrefix(Datasource.class)); cInfoList.forEach(c -> System.out.println(new Gson().toJson(c)));
List<Relation> rList = new ArrayList<>();
cInfoList.forEach(c -> System.out.println(new Gson().toJson(c))); cInfoList.forEach(cInfo -> Process.getRelation(cInfo).forEach(rList::add));
List<Relation> rList = new ArrayList<>(); Assertions.assertEquals(34, rList.size());
Assertions
.assertTrue(
rList
.stream()
.map(r -> r.getSource().getId())
.collect(Collectors.toSet())
.contains(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch"))));
cInfoList.forEach(cInfo -> Process.getRelation(cInfo).forEach(rList::add)); Assertions
.assertEquals(
10,
rList
.stream()
.filter(
r -> r
.getSource()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch"))))
.collect(Collectors.toList())
.size());
Assertions.assertEquals(34, rList.size()); Assertions
.assertEquals(
10,
rList
.stream()
.filter(
r -> r
.getTarget()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch"))))
.collect(Collectors.toList())
.size());
Assertions.assertTrue(rList.stream().map(r -> r.getSource().getId()).collect(Collectors.toSet()).contains( Set<String> tmp = rList
String.format("%s|%s::%s", Constants.CONTEXT_ID, .stream()
Constants.CONTEXT_NS_PREFIX, .filter(
DHPUtils.md5("dh-ch")))); r -> r
.getSource()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch"))))
.map(r -> r.getTarget().getId())
.collect(Collectors.toSet());
Assertions.assertEquals(10, rList.stream().filter(r->r.getSource().getId().equals(String.format("%s|%s::%s", Constants.CONTEXT_ID, Assertions
Constants.CONTEXT_NS_PREFIX, .assertTrue(
DHPUtils.md5("dh-ch")))).collect(Collectors.toList()).size()); tmp.contains("10|re3data_____::9ebe127e5f3a0bf401875690f3bb6b81") &&
tmp.contains("10|doajarticles::c6cd4b532e12868c1d760a8d7cda6815") &&
tmp.contains("10|doajarticles::a6de4499bb87bf3c01add0a9e2c9ed0b") &&
tmp.contains("10|doajarticles::6eb31d13b12bc06bbac06aef63cf33c9") &&
tmp.contains("10|doajarticles::0da84e9dfdc8419576169e027baa8028") &&
tmp.contains("10|re3data_____::84e123776089ce3c7a33db98d9cd15a8") &&
tmp.contains("10|openaire____::c5502a43e76feab55dd00cf50f519125") &&
tmp.contains("10|re3data_____::a48f09c562b247a9919acfe195549b47") &&
tmp.contains("10|opendoar____::97275a23ca44226c9964043c8462be96") &&
tmp.contains("10|doajarticles::2899208a99aa7d142646e0a80bfeef05"));
}
Assertions.assertEquals(10, rList.stream().filter(r->r.getTarget().getId().equals(String.format("%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch")))).collect(Collectors.toList()).size());
Set<String> tmp = rList.stream().filter(r -> r.getSource().getId().equals(String.format("%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch")))).map(r -> r.getTarget().getId()).collect(Collectors.toSet());
Assertions.assertTrue(tmp.contains("10|re3data_____::9ebe127e5f3a0bf401875690f3bb6b81") &&
tmp.contains("10|doajarticles::c6cd4b532e12868c1d760a8d7cda6815") &&
tmp.contains("10|doajarticles::a6de4499bb87bf3c01add0a9e2c9ed0b") &&
tmp.contains("10|doajarticles::6eb31d13b12bc06bbac06aef63cf33c9") &&
tmp.contains("10|doajarticles::0da84e9dfdc8419576169e027baa8028") &&
tmp.contains("10|re3data_____::84e123776089ce3c7a33db98d9cd15a8") &&
tmp.contains("10|openaire____::c5502a43e76feab55dd00cf50f519125") &&
tmp.contains("10|re3data_____::a48f09c562b247a9919acfe195549b47") &&
tmp.contains("10|opendoar____::97275a23ca44226c9964043c8462be96") &&
tmp.contains("10|doajarticles::2899208a99aa7d142646e0a80bfeef05") );
}
} }

151
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/DumpRelationTest.java
View File

@ -1,7 +1,11 @@
package eu.dnetlib.dhp.oa.graph.dump.graph; package eu.dnetlib.dhp.oa.graph.dump.graph;
import com.fasterxml.jackson.databind.ObjectMapper; import java.io.IOException;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation; import java.nio.file.Files;
import java.nio.file.Path;
import java.util.HashMap;
import org.apache.commons.io.FileUtils; import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaRDD;
@ -17,93 +21,110 @@ import org.junit.jupiter.api.Test;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
import java.io.IOException; import com.fasterxml.jackson.databind.ObjectMapper;
import java.nio.file.Files;
import java.nio.file.Path; import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
import java.util.HashMap;
public class DumpRelationTest { public class DumpRelationTest {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static SparkSession spark; private static SparkSession spark;
private static Path workingDir; private static Path workingDir;
private static final Logger log = LoggerFactory private static final Logger log = LoggerFactory
.getLogger(DumpRelationTest.class); .getLogger(DumpRelationTest.class);
private static HashMap<String, String> map = new HashMap<>(); private static HashMap<String, String> map = new HashMap<>();
@BeforeAll @BeforeAll
public static void beforeAll() throws IOException { public static void beforeAll() throws IOException {
workingDir = Files workingDir = Files
.createTempDirectory(DumpRelationTest.class.getSimpleName()); .createTempDirectory(DumpRelationTest.class.getSimpleName());
log.info("using work dir {}", workingDir); log.info("using work dir {}", workingDir);
SparkConf conf = new SparkConf(); SparkConf conf = new SparkConf();
conf.setAppName(DumpRelationTest.class.getSimpleName()); conf.setAppName(DumpRelationTest.class.getSimpleName());
conf.setMaster("local[*]"); conf.setMaster("local[*]");
conf.set("spark.driver.host", "localhost"); conf.set("spark.driver.host", "localhost");
conf.set("hive.metastore.local", "true"); conf.set("hive.metastore.local", "true");
conf.set("spark.ui.enabled", "false"); conf.set("spark.ui.enabled", "false");
conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("spark.sql.warehouse.dir", workingDir.toString());
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
spark = SparkSession spark = SparkSession
.builder() .builder()
.appName(DumpRelationTest.class.getSimpleName()) .appName(DumpRelationTest.class.getSimpleName())
.config(conf) .config(conf)
.getOrCreate(); .getOrCreate();
} }
@AfterAll @AfterAll
public static void afterAll() throws IOException { public static void afterAll() throws IOException {
FileUtils.deleteDirectory(workingDir.toFile()); FileUtils.deleteDirectory(workingDir.toFile());
spark.stop(); spark.stop();
} }
@Test @Test
public void test1() throws Exception { public void test1() throws Exception {
final String sourcePath = getClass() final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation") .getResource("/eu/dnetlib/dhp/oa/graph/dump/relation")
.getPath(); .getPath();
SparkDumpRelationJob.main(new String[] { SparkDumpRelationJob.main(new String[] {
"-isSparkSessionManaged", Boolean.FALSE.toString(), "-isSparkSessionManaged", Boolean.FALSE.toString(),
"-outputPath", workingDir.toString() + "/relation", "-outputPath", workingDir.toString() + "/relation",
"-sourcePath", sourcePath "-sourcePath", sourcePath
}); });
// dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset"); // dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset");
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc JavaRDD<Relation> tmp = sc
.textFile(workingDir.toString() + "/relation") .textFile(workingDir.toString() + "/relation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); .map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
org.apache.spark.sql.Dataset<Relation> verificationDataset = spark org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(Relation.class)); .createDataset(tmp.rdd(), Encoders.bean(Relation.class));
verificationDataset.createOrReplaceTempView("table"); verificationDataset.createOrReplaceTempView("table");
Dataset<Row> check = spark.sql("SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance " + Dataset<Row> check = spark
"from table "); .sql(
"SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance "
+
"from table ");
Assertions.assertEquals(22, check.filter("name = 'isProvidedBy'").count()); Assertions.assertEquals(22, check.filter("name = 'isProvidedBy'").count());
Assertions.assertEquals(22, check.filter("name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " + Assertions
"provenance = 'Harvested'").count()); .assertEquals(
22, check
.filter(
"name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " +
"provenance = 'Harvested'")
.count());
Assertions.assertEquals(7, check.filter("name = 'isParticipant'").count()); Assertions.assertEquals(7, check.filter("name = 'isParticipant'").count());
Assertions.assertEquals(7, check.filter("name = 'isParticipant' and stype = 'organization' and ttype = 'project' " + Assertions
"and provenance = 'Harvested'").count()); .assertEquals(
7, check
.filter(
"name = 'isParticipant' and stype = 'organization' and ttype = 'project' " +
"and provenance = 'Harvested'")
.count());
Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf'").count()); Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf'").count());
Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " + Assertions
"and provenance = 'Inferred by OpenAIRE'").count()); .assertEquals(
} 1, check
.filter(
"name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " +
"and provenance = 'Inferred by OpenAIRE'")
.count());
}
} }

175
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/ExtractRelationFromEntityTest.java
View File

@ -1,9 +1,11 @@
package eu.dnetlib.dhp.oa.graph.dump.graph; package eu.dnetlib.dhp.oa.graph.dump.graph;
import com.fasterxml.jackson.databind.ObjectMapper; import java.io.IOException;
import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap; import java.nio.file.Files;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation; import java.nio.file.Path;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; import java.util.HashMap;
import org.apache.commons.io.FileUtils; import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaRDD;
@ -22,108 +24,113 @@ import org.mockito.junit.jupiter.MockitoExtension;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
import java.io.IOException; import com.fasterxml.jackson.databind.ObjectMapper;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.HashMap;
import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
public class ExtractRelationFromEntityTest { public class ExtractRelationFromEntityTest {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static SparkSession spark; private static SparkSession spark;
private static Path workingDir; private static Path workingDir;
private static final Logger log = LoggerFactory private static final Logger log = LoggerFactory
.getLogger(ExtractRelationFromEntityTest.class); .getLogger(ExtractRelationFromEntityTest.class);
private static CommunityMap map = new CommunityMap(); private static CommunityMap map = new CommunityMap();
static { static {
map.put("egi", "EGI Federation"); map.put("egi", "EGI Federation");
map.put("fet-fp7", "FET FP7"); map.put("fet-fp7", "FET FP7");
map.put("fet-h2020", "FET H2020"); map.put("fet-h2020", "FET H2020");
map.put("clarin", "CLARIN"); map.put("clarin", "CLARIN");
map.put("fam", "Fisheries and Aquaculture Management"); map.put("fam", "Fisheries and Aquaculture Management");
map.put("ni", "Neuroinformatics"); map.put("ni", "Neuroinformatics");
map.put("mes", "European Marine Scinece"); map.put("mes", "European Marine Scinece");
map.put("instruct", "Instruct-Eric"); map.put("instruct", "Instruct-Eric");
map.put("rda", "Research Data Alliance"); map.put("rda", "Research Data Alliance");
map.put("elixir-gr", "ELIXIR GR"); map.put("elixir-gr", "ELIXIR GR");
map.put("aginfra", "Agricultural and Food Sciences"); map.put("aginfra", "Agricultural and Food Sciences");
map.put("dariah", "DARIAH EU"); map.put("dariah", "DARIAH EU");
map.put("risis", "RISI"); map.put("risis", "RISI");
map.put("ee", "SDSN - Greece"); map.put("ee", "SDSN - Greece");
map.put("oa-pg", "EC Post-Grant Open Access Pilot"); map.put("oa-pg", "EC Post-Grant Open Access Pilot");
map.put("beopen", "Transport Research"); map.put("beopen", "Transport Research");
map.put("euromarine", "Euromarine"); map.put("euromarine", "Euromarine");
map.put("ifremer", "Ifremer"); map.put("ifremer", "Ifremer");
map.put("dh-ch", "Digital Humanities and Cultural Heritage"); map.put("dh-ch", "Digital Humanities and Cultural Heritage");
map.put("science-innovation-policy", "Science and Innovation Policy Studies"); map.put("science-innovation-policy", "Science and Innovation Policy Studies");
map.put("covid-19", "COVID-19"); map.put("covid-19", "COVID-19");
map.put("enrmaps", "Energy Research"); map.put("enrmaps", "Energy Research");
map.put("epos", "EPOS"); map.put("epos", "EPOS");
} }
@BeforeAll
public static void beforeAll() throws IOException {
workingDir = Files
.createTempDirectory(ExtractRelationFromEntityTest.class.getSimpleName());
log.info("using work dir {}", workingDir);
SparkConf conf = new SparkConf();
conf.setAppName(ExtractRelationFromEntityTest.class.getSimpleName());
@BeforeAll conf.setMaster("local[*]");
public static void beforeAll() throws IOException { conf.set("spark.driver.host", "localhost");
workingDir = Files conf.set("hive.metastore.local", "true");
.createTempDirectory(ExtractRelationFromEntityTest.class.getSimpleName()); conf.set("spark.ui.enabled", "false");
log.info("using work dir {}", workingDir); conf.set("spark.sql.warehouse.dir", workingDir.toString());
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
SparkConf conf = new SparkConf(); spark = SparkSession
conf.setAppName(ExtractRelationFromEntityTest.class.getSimpleName()); .builder()
.appName(ExtractRelationFromEntityTest.class.getSimpleName())
.config(conf)
.getOrCreate();
}
conf.setMaster("local[*]"); @AfterAll
conf.set("spark.driver.host", "localhost"); public static void afterAll() throws IOException {
conf.set("hive.metastore.local", "true"); FileUtils.deleteDirectory(workingDir.toFile());
conf.set("spark.ui.enabled", "false"); spark.stop();
conf.set("spark.sql.warehouse.dir", workingDir.toString()); }
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
spark = SparkSession @Test
.builder() public void test1() {
.appName(ExtractRelationFromEntityTest.class.getSimpleName())
.config(conf)
.getOrCreate();
}
@AfterAll final String sourcePath = getClass()
public static void afterAll() throws IOException { .getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/singelRecord_pub.json")
FileUtils.deleteDirectory(workingDir.toFile()); .getPath();
spark.stop();
}
@Test Extractor ex = new Extractor();
public void test1() { ex
.run(
false, sourcePath, workingDir.toString() + "/relation",
eu.dnetlib.dhp.schema.oaf.Publication.class, map);
final String sourcePath = getClass() final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/singelRecord_pub.json")
.getPath();
Extractor ex = new Extractor(); JavaRDD<Relation> tmp = sc
ex.run(false, sourcePath, workingDir.toString() + "/relation", .textFile(workingDir.toString() + "/relation")
eu.dnetlib.dhp.schema.oaf.Publication.class, map); .map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
JavaRDD<Relation> tmp = sc Assertions
.textFile(workingDir.toString() + "/relation") .assertEquals(
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); 9,
verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daeab3685c3'").count());
org.apache.spark.sql.Dataset<Relation> verificationDataset = spark Assertions
.createDataset(tmp.rdd(), Encoders.bean(Relation.class)); .assertEquals(
9,
verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daxab3685c3'").count());
Assertions.assertEquals(9, verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daeab3685c3'").count()); }
Assertions.assertEquals(9, verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daxab3685c3'").count());
}
} }

9
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/FunderParsingTest.java
View File

@ -28,7 +28,9 @@ public class FunderParsingTest {
Assertions.assertEquals("US", f.getJurisdiction()); Assertions.assertEquals("US", f.getJurisdiction());
Assertions.assertEquals("NSF::CISE/OAD::CISE/CCF", f.getFunding_stream().getId()); Assertions.assertEquals("NSF::CISE/OAD::CISE/CCF", f.getFunding_stream().getId());
Assertions.assertEquals("Directorate for Computer & Information Science & Engineering - Division of Computing and Communication Foundations", Assertions
.assertEquals(
"Directorate for Computer & Information Science & Engineering - Division of Computing and Communication Foundations",
f.getFunding_stream().getDescription()); f.getFunding_stream().getDescription());
} }
@ -57,9 +59,10 @@ public class FunderParsingTest {
Assertions.assertEquals("EU", f.getJurisdiction()); Assertions.assertEquals("EU", f.getJurisdiction());
Assertions.assertEquals("EC::H2020::ERC::ERC-COG", f.getFunding_stream().getId()); Assertions.assertEquals("EC::H2020::ERC::ERC-COG", f.getFunding_stream().getId());
Assertions.assertEquals("Horizon 2020 Framework Programme - European Research Council - Consolidator Grant", Assertions
.assertEquals(
"Horizon 2020 Framework Programme - European Research Council - Consolidator Grant",
f.getFunding_stream().getDescription()); f.getFunding_stream().getDescription());
} }
} }

1363
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/QueryInformationSystemTest.java
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File diff suppressed because it is too large Load Diff

1
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/RelationFromOrganizationTest.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.oa.graph.dump.graph; package eu.dnetlib.dhp.oa.graph.dump.graph;
public class RelationFromOrganizationTest { public class RelationFromOrganizationTest {