2020-05-19 18:42:50 +02:00
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package eu.dnetlib.dhp.actionmanager.project;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.util.HashMap;
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2020-09-23 17:31:15 +02:00
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import java.util.Map;
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2020-05-19 18:42:50 +02:00
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import java.util.Optional;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.spark.SparkConf;
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2020-09-23 17:31:15 +02:00
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import org.apache.spark.api.java.JavaRDD;
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2020-05-19 18:42:50 +02:00
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.*;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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2020-09-28 12:06:56 +02:00
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import eu.dnetlib.dhp.actionmanager.project.utils.CSVProgramme;
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2020-05-19 18:42:50 +02:00
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.common.HdfsSupport;
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import scala.Tuple2;
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public class PrepareProgramme {
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private static final Logger log = LoggerFactory.getLogger(PrepareProgramme.class);
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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public static void main(String[] args) throws Exception {
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String jsonConfiguration = IOUtils
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.toString(
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PrepareProgramme.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/actionmanager/project/prepare_programme_parameters.json"));
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
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parser.parseArgument(args);
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Boolean isSparkSessionManaged = Optional
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.ofNullable(parser.get("isSparkSessionManaged"))
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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final String programmePath = parser.get("programmePath");
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log.info("programmePath {}: ", programmePath);
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final String outputPath = parser.get("outputPath");
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log.info("outputPath {}: ", outputPath);
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SparkConf conf = new SparkConf();
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runWithSparkSession(
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conf,
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isSparkSessionManaged,
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spark -> {
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removeOutputDir(spark, outputPath);
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exec(spark, programmePath, outputPath);
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});
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}
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private static void removeOutputDir(SparkSession spark, String path) {
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HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
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}
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private static void exec(SparkSession spark, String programmePath, String outputPath) {
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Dataset<CSVProgramme> programme = readPath(spark, programmePath, CSVProgramme.class);
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2020-09-23 17:31:15 +02:00
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JavaRDD<CSVProgramme> h2020Programmes = programme
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2020-05-19 18:42:50 +02:00
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.toJavaRDD()
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2020-09-24 15:19:31 +02:00
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.filter(p -> p.getFrameworkProgramme().trim().equalsIgnoreCase("H2020"))
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2020-05-19 18:42:50 +02:00
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.mapToPair(csvProgramme -> new Tuple2<>(csvProgramme.getCode(), csvProgramme))
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.reduceByKey((a, b) -> {
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2020-09-23 17:31:15 +02:00
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if (!a.getLanguage().equals("en")) {
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if (b.getLanguage().equalsIgnoreCase("en")) {
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a.setTitle(b.getTitle());
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a.setLanguage(b.getLanguage());
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}
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}
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2020-05-19 18:42:50 +02:00
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if (StringUtils.isEmpty(a.getShortTitle())) {
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2020-09-23 17:31:15 +02:00
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if (!StringUtils.isEmpty(b.getShortTitle())) {
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2020-05-19 18:42:50 +02:00
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a.setShortTitle(b.getShortTitle());
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}
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}
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2020-09-23 17:31:15 +02:00
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2020-05-19 18:42:50 +02:00
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return a;
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})
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.map(p -> {
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CSVProgramme csvProgramme = p._2();
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2020-09-23 17:31:15 +02:00
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String programmeTitle = csvProgramme.getTitle().trim();
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if (programmeTitle.length() > 8 && programmeTitle.substring(0, 8).equalsIgnoreCase("PRIORITY")) {
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programmeTitle = programmeTitle.substring(9);
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if (programmeTitle.charAt(0) == '\'') {
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programmeTitle = programmeTitle.substring(1);
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}
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if (programmeTitle.charAt(programmeTitle.length() - 1) == '\'') {
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programmeTitle = programmeTitle.substring(0, programmeTitle.length() - 1);
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}
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csvProgramme.setTitle(programmeTitle);
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2020-05-19 18:42:50 +02:00
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}
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2020-09-23 17:31:15 +02:00
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return csvProgramme;
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});
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Object[] codedescription = h2020Programmes
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.map(value -> new Tuple2<>(value.getCode(), value.getTitle()))
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.collect()
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.toArray();
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for (int i = 0; i < codedescription.length - 1; i++) {
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for (int j = i + 1; j < codedescription.length; j++) {
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Tuple2<String, String> t2i = (Tuple2<String, String>) codedescription[i];
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Tuple2<String, String> t2j = (Tuple2<String, String>) codedescription[j];
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if (t2i._1().compareTo(t2j._1()) > 0) {
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Tuple2<String, String> temp = t2i;
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codedescription[i] = t2j;
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codedescription[j] = temp;
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}
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}
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}
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Map<String, String> map = new HashMap<>();
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for (int j = 0; j < codedescription.length; j++) {
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Tuple2<String, String> entry = (Tuple2<String, String>) codedescription[j];
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String ent = entry._1();
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if (ent.contains("Euratom-")) {
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ent = ent.replace("-Euratom-", ".Euratom.");
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}
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String[] tmp = ent.split("\\.");
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if (tmp.length <= 2) {
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map.put(entry._1(), entry._2());
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} else {
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if (ent.endsWith(".")) {
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ent = ent.substring(0, ent.length() - 1);
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}
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String key = ent.substring(0, ent.lastIndexOf(".") + 1);
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if (key.contains("Euratom")) {
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key = key.replace(".Euratom.", "-Euratom-");
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ent = ent.replace(".Euratom.", "-Euratom-");
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if (key.endsWith("-")) {
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key = key.substring(0, key.length() - 1);
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}
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}
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String current = entry._2();
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if (!ent.contains("Euratom")) {
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String parent;
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String tmp_key = tmp[0] + ".";
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for (int i = 1; i < tmp.length - 1; i++) {
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tmp_key += tmp[i] + ".";
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parent = map.get(tmp_key).toLowerCase().trim();
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if (parent.contains("|")) {
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parent = parent.substring(parent.lastIndexOf("|") + 1).trim();
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}
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if (current.trim().length() > parent.length()
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&& current.toLowerCase().trim().substring(0, parent.length()).equals(parent)) {
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current = current.substring(parent.length() + 1);
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2020-10-01 10:30:26 +02:00
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if (current.trim().charAt(0) == '-' || current.trim().charAt(0) =='–') {
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2020-09-23 17:31:15 +02:00
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current = current.trim().substring(1).trim();
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}
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}
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}
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}
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map.put(ent + ".", map.get(key) + " | " + current);
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2020-09-28 12:06:56 +02:00
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2020-09-23 17:31:15 +02:00
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}
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}
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h2020Programmes.map(csvProgramme -> {
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if (!csvProgramme.getCode().endsWith(".") && !csvProgramme.getCode().contains("Euratom")
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&& !csvProgramme.getCode().equals("H2020-EC"))
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csvProgramme.setClassification(map.get(csvProgramme.getCode() + "."));
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else
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csvProgramme.setClassification(map.get(csvProgramme.getCode()));
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return OBJECT_MAPPER.writeValueAsString(csvProgramme);
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}).saveAsTextFile(outputPath);
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2020-05-19 18:42:50 +02:00
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}
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public static <R> Dataset<R> readPath(
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SparkSession spark, String inputPath, Class<R> clazz) {
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return spark
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.read()
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.textFile(inputPath)
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.map((MapFunction<String, R>) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz));
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}
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}
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