BrBETA_dnet-hadoop/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/createunresolvedentities/oozie_app/workflow.xml

<workflow-app name="UnresolvedEntities" xmlns="uri:oozie:workflow:0.5">
    <parameters>
        <property>
            <name>fosPath</name>
            <description>the input path of the resources to be extended</description>
        </property>

        <property>
            <name>bipScorePath</name>
            <description>the path where to find the bipFinder scores</description>
        </property>
        <property>
            <name>outputPath</name>
            <description>the path where to store the actionset</description>
        </property>
        <property>
            <name>sparkDriverMemory</name>
            <description>memory for driver process</description>
        </property>
        <property>
            <name>sparkExecutorMemory</name>
            <description>memory for individual executor</description>
        </property>
        <property>
            <name>sparkExecutorCores</name>
            <description>number of cores used by single executor</description>
        </property>
        <property>
            <name>oozieActionShareLibForSpark2</name>
            <description>oozie action sharelib for spark 2.*</description>
        </property>
        <property>
            <name>spark2ExtraListeners</name>
            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
            <description>spark 2.* extra listeners classname</description>
        </property>
        <property>
            <name>spark2SqlQueryExecutionListeners</name>
            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
            <description>spark 2.* sql query execution listeners classname</description>
        </property>
        <property>
            <name>spark2YarnHistoryServerAddress</name>
            <description>spark 2.* yarn history server address</description>
        </property>
        <property>
            <name>spark2EventLogDir</name>
            <description>spark 2.* event log dir location</description>
        </property>
    </parameters>

    <global>
        <job-tracker>${jobTracker}</job-tracker>
        <name-node>${nameNode}</name-node>
        <configuration>
            <property>
                <name>mapreduce.job.queuename</name>
                <value>${queueName}</value>
            </property>
            <property>
                <name>oozie.launcher.mapred.job.queue.name</name>
                <value>${oozieLauncherQueueName}</value>
            </property>
            <property>
                <name>oozie.action.sharelib.for.spark</name>
                <value>${oozieActionShareLibForSpark2}</value>
            </property>

        </configuration>
    </global>
    <start to="prepareInfo"/>

    <kill name="Kill">
        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
    </kill>


    <fork name="prepareInfo">
        <path start="prepareBip"/>
        <path start="getFOS"/>
    </fork>

    <action name="prepareBip">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>Produces the unresolved from bip finder!</name>
            <class>eu.dnetlib.dhp.actionmanager.createunresolvedentities.PrepareBipFinder</class>
            <jar>dhp-aggregation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-memory=${sparkExecutorMemory}
                --executor-cores=${sparkExecutorCores}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${bipScorePath}</arg>
            <arg>--outputPath</arg><arg>${workingDir}/prepared</arg>
        </spark>
        <ok to="join"/>
        <error to="Kill"/>
    </action>

    <action name="getFOS">
        <java>
            <main-class>eu.dnetlib.dhp.actionmanager.createunresolvedentities.GetFOSData</main-class>
            <arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
            <arg>--sourcePath</arg><arg>${fosPath}</arg>
            <arg>--outputPath</arg><arg>${workingDir}/input/fos</arg>
            <arg>--classForName</arg><arg>eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.FOSDataModel</arg>
        </java>
        <ok to="prepareFos"/>
        <error to="Kill"/>
    </action>

    <action name="prepareFos">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>Produces the unresolved from FOS!</name>
            <class>eu.dnetlib.dhp.actionmanager.createunresolvedentities.PrepareFOSSparkJob</class>
            <jar>dhp-aggregation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-memory=${sparkExecutorMemory}
                --executor-cores=${sparkExecutorCores}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${workingDir}/input/fos</arg>
            <arg>--outputPath</arg><arg>${workingDir}/prepared</arg>

        </spark>
        <ok to="join"/>
        <error to="Kill"/>
    </action>



    <join name="join" to="produceUnresolved"/>

    <action name="produceUnresolved">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>Saves the result produced for bip and fos by grouping results with the same id</name>
            <class>eu.dnetlib.dhp.actionmanager.createunresolvedentities.SparkSaveUnresolved</class>
            <jar>dhp-aggregation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-memory=${sparkExecutorMemory}
                --executor-cores=${sparkExecutorCores}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${workingDir}/prepared</arg>
            <arg>--outputPath</arg><arg>${outputPath}</arg>
        </spark>
        <ok to="End"/>
        <error to="Kill"/>
    </action>

    <end name="End"/>
</workflow-app>