forked from D-Net/dnet-hadoop
99 lines
3.4 KiB
XML
99 lines
3.4 KiB
XML
<workflow-app name="Create EBI Dataset" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>workingPath</name>
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<description>the Working Path</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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</parameters>
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<start to="CreateEBIDataSet"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="GenerateBaselineDataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<mode>cluster</mode>
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<name>Create Baselnie DataSet</name>
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<class>eu.dnetlib.dhp.sx.ebi.SparkCreateBaselineDataFrame</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=1
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--driver-memory=${sparkDriverMemory}
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--executor-cores=${sparkExecutorCores}
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${sparkExtraOPT}
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</spark-opts>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--master</arg><arg>yarn</arg>
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<arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<action name="CreateEBIDataSet">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<mode>cluster</mode>
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<name>Create EBI DataSet</name>
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<class>eu.dnetlib.dhp.sx.ebi.SparkEBILinksToOaf</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.sql.shuffle.partitions=1000
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${sparkExtraOPT}
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</spark-opts>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--master</arg><arg>yarn</arg>
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</spark>
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<ok to="GenerateUpdates"/>
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<error to="Kill"/>
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</action>
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<action name="GenerateUpdates">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<mode>cluster</mode>
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<name>Create Baseline DataSet</name>
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<class>eu.dnetlib.dhp.sx.ebi.SparkAddLinkUpdates</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=1
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--driver-memory=${sparkDriverMemory}
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--executor-cores=${sparkExecutorCores}
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${sparkExtraOPT}
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</spark-opts>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--master</arg><arg>yarn</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |